##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140015_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10093901 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.69202362892206 34.0 31.0 34.0 31.0 34.0 2 32.880848345946724 34.0 31.0 34.0 31.0 34.0 3 32.976338186792205 34.0 31.0 34.0 31.0 34.0 4 36.381262011585015 37.0 37.0 37.0 35.0 37.0 5 36.214714212077176 37.0 37.0 37.0 35.0 37.0 6 36.26513376741064 37.0 37.0 37.0 35.0 37.0 7 36.266231955316385 37.0 37.0 37.0 35.0 37.0 8 36.25138596069052 37.0 37.0 37.0 35.0 37.0 9 38.1484242811575 39.0 39.0 39.0 37.0 39.0 10-11 38.03823794190175 39.0 38.0 39.0 36.0 39.0 12-13 38.07847877644134 39.0 38.0 39.0 37.0 39.0 14-15 39.50155564236265 41.0 39.0 41.0 37.0 41.0 16-17 39.48515261839798 40.5 39.0 41.0 37.0 41.0 18-19 39.531495008718636 41.0 39.0 41.0 37.0 41.0 20-21 39.54692962537603 41.0 39.0 41.0 37.0 41.0 22-23 39.4840117573628 41.0 39.0 41.0 37.0 41.0 24-25 39.44433084347803 41.0 39.0 41.0 37.0 41.0 26-27 39.40669509727371 40.5 39.0 41.0 37.0 41.0 28-29 39.31039329308605 40.0 39.0 41.0 36.0 41.0 30-31 39.21516845209848 40.0 39.0 41.0 36.0 41.0 32-33 39.107886412397406 40.0 39.0 41.0 35.5 41.0 34-35 39.034009766945275 40.0 39.0 41.0 35.0 41.0 36-37 39.03655893359122 40.0 39.0 41.0 35.0 41.0 38-39 39.02873019380985 40.0 39.0 41.0 35.0 41.0 40-41 38.97864266861346 40.0 39.0 41.0 35.0 41.0 42-43 38.938687757431055 40.0 38.0 41.0 35.0 41.0 44-45 38.903948316496525 40.0 38.0 41.0 35.0 41.0 46-47 38.82770032780396 40.0 38.0 41.0 35.0 41.0 48-49 38.79592516202017 40.0 38.0 41.0 35.0 41.0 50-51 38.701539136829105 40.0 38.0 41.0 35.0 41.0 52-53 38.529512076381764 40.0 38.0 41.0 34.5 41.0 54-55 38.392224140857905 40.0 38.0 41.0 34.0 41.0 56-57 38.2302381134024 40.0 37.0 41.0 34.0 41.0 58-59 38.03923012937962 40.0 37.0 41.0 34.0 41.0 60-61 37.90880288731876 39.0 36.5 41.0 34.0 41.0 62-63 37.73892936018788 39.0 36.0 41.0 33.5 41.0 64-65 37.484046593840525 39.0 35.5 40.5 33.0 41.0 66-67 37.21312375915882 38.5 35.0 40.0 33.0 41.0 68-69 36.9556071024205 38.0 35.0 40.0 33.0 41.0 70-71 36.65955293551569 37.0 35.0 40.0 32.5 41.0 72-73 36.30914609121089 37.0 35.0 39.0 32.0 41.0 74-75 35.93360188347749 36.0 35.0 39.0 32.0 40.5 76-77 34.0031883829074 34.5 32.0 36.5 29.0 39.0 78-79 35.0702840375968 35.0 34.0 37.0 31.0 39.0 80-81 35.003610831328885 35.0 34.0 37.0 31.0 39.0 82-83 34.72968908476503 35.0 34.0 36.5 31.0 39.0 84-85 34.48726164466382 35.0 34.0 36.0 31.0 37.0 86-87 34.28462362926898 35.0 34.0 36.0 31.0 37.0 88-89 34.131518791650265 35.0 34.0 35.5 31.0 37.0 90-91 33.992013560051795 35.0 34.0 35.0 31.0 36.0 92-93 33.907958834185564 35.0 34.0 35.0 31.0 36.0 94-95 33.82740995580262 35.0 34.0 35.0 31.0 36.0 96-97 33.79133371214957 35.0 34.0 35.0 31.0 36.0 98-99 33.82259924630836 35.0 34.0 35.0 31.0 35.0 100-101 32.54703694739284 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 15.0 20 27.0 21 131.0 22 503.0 23 1781.0 24 4672.0 25 10219.0 26 19263.0 27 32562.0 28 49652.0 29 70412.0 30 95347.0 31 127271.0 32 170239.0 33 238100.0 34 362134.0 35 592424.0 36 1158793.0 37 2463880.0 38 3279328.0 39 1391763.0 40 25384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.51738747982569 20.013134664189792 13.135268515116207 24.334209340868313 2 15.028844697328076 21.416168584478342 40.55714733368714 22.997839384506438 3 18.28817710197684 25.96625391999694 30.57659535070257 25.16897362732365 4 12.34870810067627 17.626183660663106 39.220695513269504 30.804412725391124 5 12.9458980176146 38.094106341453745 36.06289937486997 12.89709626606168 6 30.178689091561328 38.24507492197516 18.674821558087405 12.901414428376107 7 26.555758769577785 32.52997032564516 23.493265884022442 17.421005020754613 8 24.671326997526315 36.84395057701984 21.360686366654853 17.12403605879899 9 25.809620635807878 16.100771195593914 21.10022729078538 36.98938087781283 10-11 24.21543380470636 26.620947559893267 29.426538174062213 19.737080461338163 12-13 24.85618247199017 24.219701923950453 29.414232424500934 21.50988317955844 14-15 21.92418926800997 25.68414795587924 26.725639650729217 25.666023125381578 16-17 21.760837151702788 28.770422291021674 27.432054489164088 22.036686068111454 18-19 21.82098873369176 28.16450250502754 28.852621003514894 21.161887757765804 20-21 22.525503049111233 27.41894688286049 28.69975391329771 21.35579615473057 22-23 22.216126050749462 27.354978974978884 28.563403092415225 21.86549188185643 24-25 22.012380234632847 27.41303834027758 28.667933131075596 21.906648294013976 26-27 21.98894577434076 27.618201619745957 28.55218966364029 21.84066294227299 28-29 21.933335270744443 27.723182568695687 28.547136071622585 21.796346088937288 30-31 22.19628527789912 27.569641729895935 28.468690751266863 21.765382240938088 32-33 21.977142127677276 27.73914558017307 28.415058270505465 21.86865402164419 34-35 22.113764049847585 27.730061967817115 28.4287922754855 21.727381706849798 36-37 22.09595644747095 27.66943456600442 28.39631483530553 21.838294151219095 38-39 21.935515092136942 27.783255190607502 28.491688698153283 21.78954101910227 40-41 22.15765487063587 27.678700610372292 28.352870520426716 21.810773998565125 42-43 22.019727230906117 27.80280461812031 28.211559339475063 21.96590881149851 44-45 22.13105006418327 27.84666947012698 28.083206935114358 21.939073530575396 46-47 22.158404713337525 27.833323906519915 27.885214622596227 22.123056757546337 48-49 22.102885580830478 27.925721908393403 27.90612658994644 22.065265920829678 50-51 22.09839229875473 28.053735662315386 27.79258490753915 22.05528713139073 52-53 22.292729507951414 27.92573639651021 27.710854344667784 22.07067975087059 54-55 22.196340254303625 27.833423203514407 27.79953666928869 22.170699872893284 56-57 22.20593744910256 27.95207853291665 27.737940296190526 22.10404372179026 58-59 22.20032208690004 27.982839892302362 27.69215796856167 22.124680052235924 60-61 22.225427853319545 28.005300312009034 27.729024832669367 22.04024700200205 62-63 22.215708833668256 28.028129148258053 27.703028551128934 22.053133466944765 64-65 22.19308217519493 27.942620744795544 27.68476720951582 22.179529870493703 66-67 22.238489210654272 28.006700876720362 27.546231276165013 22.208578636460356 68-69 22.202655762666414 28.046237401941188 27.609513107119373 22.14159372827303 70-71 22.206998212861404 27.83116678594255 27.647416039176203 22.31441896201984 72-73 22.214445131171345 27.888267138118483 27.635199944520377 22.26208778618979 74-75 22.097451888710594 27.983661975630813 27.65169860478237 22.26718753087622 76-77 22.249588597712407 27.927585784729835 27.53821820844287 22.284607409114887 78-79 22.212465999493297 27.9504663440225 27.52400420516563 22.313063451318573 80-81 22.182716320432625 27.970033811499334 27.548144927242134 22.299104940825902 82-83 22.281168830968063 27.930182535925773 27.595706993958963 22.192941639147197 84-85 22.290165339993926 27.92909189458821 27.558672685759976 22.22207007965789 86-87 22.1599063409186 27.944837957421694 27.637711943442376 22.25754375821733 88-89 22.211002236723306 27.941629027988125 27.57608573997223 22.271282995316337 90-91 22.24443780109866 27.956014710183318 27.594258592883158 22.205288895834858 92-93 22.271691253619945 27.918646730373737 27.617167830509988 22.19249418549633 94-95 22.15184283025937 27.93545130634992 27.67458293616781 22.238122927222907 96-97 22.16461882964073 28.003738422024604 27.67368125242567 22.157961495909 98-99 22.421380804734355 28.559448866264113 27.7179357816475 21.301234547354028 100-101 23.14662481341527 31.135942108521526 24.841348745226373 20.876084332836836 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2256.0 1 1879.5 2 2285.0 3 3301.5 4 4431.0 5 7051.0 6 9352.0 7 11103.5 8 12389.5 9 12372.0 10 11119.0 11 9648.0 12 10235.5 13 13287.5 14 20564.5 15 30307.5 16 37682.0 17 41807.5 18 43419.0 19 42824.5 20 40995.5 21 39662.0 22 40824.5 23 46476.5 24 56723.5 25 71589.0 26 90626.5 27 111163.5 28 133596.5 29 157295.0 30 178535.0 31 199616.0 32 221406.0 33 242695.5 34 263539.5 35 283469.5 36 305586.0 37 323973.5 38 338737.0 39 354478.5 40 369267.0 41 382626.5 42 391773.5 43 399909.5 44 408496.5 45 416012.0 46 421088.0 47 422706.0 48 421436.0 49 416588.0 50 409202.0 51 397716.5 52 381446.0 53 361989.5 54 340285.5 55 316603.5 56 289921.5 57 261744.5 58 233621.5 59 203553.5 60 170993.0 61 140171.5 62 112530.0 63 87468.5 64 65995.5 65 49738.5 66 37865.0 67 28985.0 68 21982.5 69 15951.5 70 11651.0 71 8550.0 72 6221.0 73 4508.5 74 3144.0 75 2159.5 76 1450.0 77 947.5 78 641.5 79 447.0 80 320.0 81 222.5 82 160.0 83 112.5 84 80.5 85 55.0 86 43.0 87 39.5 88 29.5 89 18.0 90 11.5 91 8.5 92 6.5 93 5.0 94 2.5 95 1.0 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.783255056692155E-4 3 0.004577021312176531 4 2.972091761153592E-5 5 9.90697253717864E-6 6 0.0 7 0.0 8 5.349765170076465E-4 9 0.0022092548757908365 10-11 8.965810146146669E-4 12-13 3.368370662640737E-4 14-15 1.3374412925191162E-4 16-17 0.0014959528531139745 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 6.156641849772974E-4 32-33 6.666349932130091E-4 34-35 2.9926978173257255E-5 36-37 7.761153942388303E-4 38-39 6.344907031249724E-4 40-41 1.5203179856556985E-5 42-43 7.651902117480265E-5 44-45 9.100280463445922E-4 46-47 0.0 48-49 5.131831515059098E-4 50-51 2.1129979537199566E-5 52-53 0.0 54-55 5.905413105657826E-4 56-57 7.962076682923025E-4 58-59 1.1481611160913359E-4 60-61 1.600666495450547E-4 62-63 1.6712103161361708E-5 64-65 5.621030252778292E-6 66-67 0.0 68-69 1.1469201237802074E-5 70-71 4.289160601416826E-4 72-73 0.0 74-75 5.916401133653454E-6 76-77 0.0 78-79 2.6585837663854105E-4 80-81 0.0 82-83 6.183570673204103E-6 84-85 1.875729893394767E-5 86-87 2.655589066560443E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 201.0 20-21 604.0 22-23 1182.0 24-25 3110.0 26-27 4699.0 28-29 9327.0 30-31 18897.0 32-33 23991.0 34-35 34080.0 36-37 52634.0 38-39 63138.0 40-41 63716.0 42-43 72175.0 44-45 87725.0 46-47 88707.0 48-49 84952.0 50-51 77057.0 52-53 74501.0 54-55 80682.0 56-57 85933.0 58-59 86230.0 60-61 84781.0 62-63 79982.0 64-65 83926.0 66-67 89914.0 68-69 92151.0 70-71 91577.0 72-73 85669.0 74-75 87283.0 76-77 86759.0 78-79 93892.0 80-81 95795.0 82-83 89753.0 84-85 88381.0 86-87 92513.0 88-89 99926.0 90-91 108705.0 92-93 106478.0 94-95 118772.0 96-97 186306.0 98-99 859767.0 100-101 6358030.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.10890633423553 #Duplication Level Percentage of deduplicated Percentage of total 1 89.72812204339519 76.36662334538174 2 7.148669051329927 12.168308094081741 3 1.762305996358139 4.499638079289193 4 0.633017443756665 2.1550168931449285 5 0.29226397015884364 1.2437133430560414 6 0.14281006535665935 0.7292645085615584 7 0.08156006270960346 0.48590414164362117 8 0.058042577876118974 0.39519522590849443 9 0.036099104820636434 0.2765119797836367 >10 0.11470417691508429 1.4911886464070763 >50 0.001990795958934803 0.10923732082644368 >100 3.5821455437599887E-4 0.0497794188100967 >500 5.649680982495635E-5 0.029619003105494365 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.9720917611535916E-5 0.0 0.0 0.0 3 0.0 2.9720917611535916E-5 0.0 1.981394507435728E-5 0.0 4 0.0 8.916275283460775E-5 0.0 1.981394507435728E-5 1.981394507435728E-5 5 0.0 1.0897669790896503E-4 0.0 1.981394507435728E-5 1.981394507435728E-5 6 0.0 1.0897669790896503E-4 0.0 1.981394507435728E-5 1.981394507435728E-5 7 0.0 1.287906429833223E-4 0.0 1.981394507435728E-5 1.981394507435728E-5 8 0.0 1.287906429833223E-4 0.0 1.981394507435728E-5 3.962789014871456E-5 9 0.0 2.1795339581793006E-4 0.0 4.953486268589319E-5 7.925578029742911E-5 10-11 0.0 2.278603683551087E-4 0.0 5.448834895448251E-5 7.925578029742911E-5 12-13 0.0 2.278603683551087E-4 0.0 5.944183522307183E-5 8.420926656601844E-5 14-15 0.0 3.56651011338431E-4 0.0 6.439532149166114E-5 1.4365110178909024E-4 16-17 0.0 3.7151147014419895E-4 0.0 6.934880776025047E-5 1.6841853313203685E-4 18-19 0.0 4.4581376417303874E-4 0.0 6.934880776025047E-5 1.832789919378048E-4 20-21 0.0 4.953486268589319E-4 0.0 6.934880776025047E-5 1.9813945074357276E-4 22-23 0.0 5.300230307390572E-4 0.0 6.934880776025047E-5 2.0309293701216207E-4 24-25 0.0 5.646974346191824E-4 0.0 1.0897669790896502E-4 2.1795339581793006E-4 26-27 0.0 5.845113796935396E-4 0.0 1.783255056692155E-4 2.1795339581793006E-4 28-29 0.0 5.993718384993075E-4 0.0 5.102090856646999E-4 2.2290688208651937E-4 30-31 0.0 6.588136737223795E-4 0.0 0.001317627347444759 2.3281385462369802E-4 32-33 0.0 6.736741325281474E-4 0.0 0.0029275103847362875 2.526277996980553E-4 34-35 0.0 8.024647755114698E-4 0.0 0.004993114158738034 2.6748825850382324E-4 36-37 0.0 9.312554184947921E-4 0.0 0.008698321887642845 2.6748825850382324E-4 38-39 0.0 9.857437674492746E-4 0.0 0.014142203296822507 2.7739523104100186E-4 40-41 0.0 0.0010006042262550425 0.0 0.019927875258534834 2.7739523104100186E-4 42-43 0.0 0.0010451856026723464 0.0 0.025356896208908727 2.823487173095912E-4 44-45 0.0 0.001134348355506954 0.0 0.03139519597031911 2.922556898467698E-4 46-47 0.0 0.0011987436769986153 0.0 0.03830530931500121 2.9720917611535916E-4 48-49 0.0 0.0012036971632672045 0.0 0.04555225972594738 3.1702312118971646E-4 50-51 4.95348626858932E-6 0.0013275343199819377 0.0 0.05244751261182372 3.269300937268951E-4 52-53 9.90697253717864E-6 0.0013374412925191163 0.0 0.058901905219795596 3.6655798387560967E-4 54-55 9.90697253717864E-6 0.0013523017513248842 0.0 0.0658516464546264 4.111393602929135E-4 56-57 9.90697253717864E-6 0.0014067901002793666 0.0 0.07195929502379704 4.160928465615028E-4 58-59 9.90697253717864E-6 0.0014414645041594919 0.0 0.07767066469148054 4.160928465615028E-4 60-61 9.90697253717864E-6 0.0014810923943082066 0.0 0.0837139179391595 4.160928465615028E-4 62-63 9.90697253717864E-6 0.001500906339382564 0.0 0.08917265980714492 4.359067916358601E-4 64-65 9.90697253717864E-6 0.001694092303857547 0.0 0.09459672727125024 4.408602779044494E-4 66-67 9.90697253717864E-6 0.001718859735200494 0.0 0.1001743528096818 4.507672504416281E-4 68-69 9.90697253717864E-6 0.0017485806528120297 0.0 0.10667828028033957 4.557207367102174E-4 70-71 9.90697253717864E-6 0.001768394597886387 0.0 0.11246395224205191 4.557207367102174E-4 72-73 9.90697253717864E-6 0.0017733480841549763 0.0 0.11701620612288549 5.448834895448252E-4 74-75 9.90697253717864E-6 0.0018030690017665123 0.0 0.12054804183238968 5.448834895448252E-4 76-77 9.90697253717864E-6 0.0018526038644524055 0.0 0.12392631946756759 5.448834895448252E-4 78-79 9.90697253717864E-6 0.0018724178095267628 0.0 0.126611109025143 5.448834895448252E-4 80-81 9.90697253717864E-6 0.0018724178095267628 0.0 0.12801789912542239 5.646974346191824E-4 82-83 9.90697253717864E-6 0.0018971852408697094 0.0 0.12868166628541333 6.04325324767897E-4 84-85 9.90697253717864E-6 0.0019566270760927812 0.0 0.12917701491227226 6.092788110364862E-4 86-87 9.90697253717864E-6 0.002011115425047264 0.0 0.12942468922570174 6.191857835736649E-4 88-89 9.90697253717864E-6 0.00211018515041905 0.0 0.12948413106092482 6.389997286480222E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10380 0.0 45.989216 1 GTATCAA 17415 0.0 33.816288 1 TCAACGC 20055 0.0 28.320179 4 ATCAACG 20350 0.0 27.910608 3 CAACGCA 20570 0.0 27.548954 5 AACGCAG 21325 0.0 26.674196 6 TATCAAC 22410 0.0 25.878443 2 ACGCAGA 25195 0.0 22.543062 7 CGCAGAG 25645 0.0 22.080835 8 GTACATG 26065 0.0 21.642946 1 TACATGG 25845 0.0 21.298033 2 ACATGGG 26250 0.0 20.383736 3 CATGGGG 19535 0.0 18.92328 4 GCAGAGT 31695 0.0 17.946997 9 GAGTACT 18420 0.0 17.92262 12-13 AGAGTAC 28060 0.0 17.408266 10-11 CAGAGTA 30900 0.0 16.880148 10-11 GTGGTAT 5750 0.0 16.871674 1 GTACTTT 20970 0.0 15.753768 14-15 GAGTACA 19320 0.0 15.484282 1 >>END_MODULE