##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140013_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9506630 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.650149527224684 34.0 31.0 34.0 31.0 34.0 2 32.854702244644 34.0 31.0 34.0 31.0 34.0 3 32.956146710243274 34.0 31.0 34.0 31.0 34.0 4 36.37320059789852 37.0 37.0 37.0 35.0 37.0 5 36.19273265079213 37.0 35.0 37.0 35.0 37.0 6 36.23799653504975 37.0 37.0 37.0 35.0 37.0 7 36.24799376855942 37.0 37.0 37.0 35.0 37.0 8 36.236078189642384 37.0 37.0 37.0 35.0 37.0 9 38.15386209413851 39.0 39.0 39.0 37.0 39.0 10-11 38.045035569912784 39.0 38.0 39.0 36.0 39.0 12-13 38.09020604567549 39.0 38.0 39.0 37.0 39.0 14-15 39.51140835395929 40.5 39.0 41.0 37.0 41.0 16-17 39.49608015669065 40.0 39.0 41.0 37.0 41.0 18-19 39.54679523658751 41.0 39.5 41.0 37.0 41.0 20-21 39.567343024751025 41.0 39.0 41.0 37.0 41.0 22-23 39.50824924221717 41.0 39.0 41.0 37.0 41.0 24-25 39.470532904294686 41.0 39.0 41.0 37.0 41.0 26-27 39.4361357532694 40.5 39.0 41.0 37.0 41.0 28-29 39.344370081613214 40.0 39.0 41.0 36.5 41.0 30-31 39.255862289088654 40.0 39.0 41.0 36.0 41.0 32-33 39.155711767280266 40.0 39.0 41.0 36.0 41.0 34-35 39.08551352576039 40.0 39.0 41.0 35.0 41.0 36-37 39.09149622717479 40.0 39.0 41.0 35.0 41.0 38-39 39.08978616910575 40.0 39.0 41.0 35.0 41.0 40-41 39.049548680100614 40.0 39.0 41.0 35.0 41.0 42-43 39.01803839343336 40.0 39.0 41.0 35.0 41.0 44-45 38.986356696830796 40.0 39.0 41.0 35.0 41.0 46-47 38.9215286994277 40.0 38.0 41.0 35.0 41.0 48-49 38.89799893556909 40.0 38.0 41.0 35.0 41.0 50-51 38.80871670555587 40.0 38.0 41.0 35.0 41.0 52-53 38.64399147060853 40.0 38.0 41.0 35.0 41.0 54-55 38.51400258654336 40.0 38.0 41.0 34.5 41.0 56-57 38.36244762860888 40.0 37.5 41.0 34.0 41.0 58-59 38.17902091674037 40.0 37.0 41.0 34.0 41.0 60-61 38.05677880777482 40.0 37.0 41.0 34.0 41.0 62-63 37.89598731311543 39.0 36.0 41.0 34.0 41.0 64-65 37.65023325458971 39.0 36.0 41.0 33.5 41.0 66-67 37.38699356817254 39.0 35.0 40.0 33.0 41.0 68-69 37.13348105715565 38.0 35.0 40.0 33.0 41.0 70-71 36.837357486860554 37.5 35.0 40.0 33.0 41.0 72-73 36.486936773131305 37.0 35.0 39.0 33.0 41.0 74-75 36.104161502957695 36.5 35.0 39.0 32.0 40.5 76-77 34.15856922635761 34.5 33.0 36.5 29.0 39.0 78-79 35.19212348911997 35.0 34.0 37.0 31.0 39.0 80-81 35.11461189113898 35.0 34.0 37.0 32.0 39.0 82-83 34.83333347662112 35.0 34.0 37.0 32.0 39.0 84-85 34.58728390896432 35.0 34.0 36.0 31.0 37.5 86-87 34.37823994712328 35.0 34.0 36.0 31.0 37.0 88-89 34.22227924491153 35.0 34.0 35.5 31.0 37.0 90-91 34.07876366905336 35.0 34.0 35.0 31.0 36.0 92-93 33.99419714668579 35.0 34.0 35.0 31.0 36.0 94-95 33.9133469112254 35.0 34.0 35.0 31.0 36.0 96-97 33.87305690392364 35.0 34.0 35.0 31.0 36.0 98-99 33.89805110634791 35.0 34.0 35.0 31.0 35.5 100-101 32.67963199062475 34.0 32.0 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 7.0 20 17.0 21 99.0 22 420.0 23 1416.0 24 3718.0 25 8229.0 26 15640.0 27 26447.0 28 40426.0 29 58413.0 30 79634.0 31 107301.0 32 145617.0 33 204285.0 34 313747.0 35 511834.0 36 1017078.0 37 2237801.0 38 3224172.0 39 1485861.0 40 24466.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.15719976479573 20.26614057768105 13.24028598988285 24.336373667640373 2 14.777639523140365 21.619350656222146 41.016143183697494 22.58686663693999 3 18.199641959908682 26.404425828285927 30.505644843501052 24.890287368304342 4 12.227575563867184 17.928356713690356 39.64367172499773 30.20039599744473 5 12.882162399151916 38.15009657474692 36.16308246479876 12.804658561302402 6 29.596786663623178 38.51745571248697 19.108106658195386 12.777650965694468 7 26.175100955859225 32.64143024394554 23.887497462297365 17.295971337897868 8 24.210615007839834 36.899334334604944 21.817955945872427 17.072094711682794 9 25.720439169909838 16.37346210006765 21.41320957936815 36.49288915065437 10-11 23.9528842968291 26.807393782889477 29.628852388107596 19.610869532173826 12-13 24.681899943197358 24.376796120589905 29.573154440073214 21.368149496139523 14-15 21.815286515328975 25.79844751349862 26.97265027040892 25.41361570076348 16-17 21.60682392119328 28.901049692426202 27.625785265427368 21.86634112095315 18-19 21.568526386321967 28.34645926053712 29.060939575853904 21.02407477728701 20-21 22.399055996680104 27.615600038816275 28.772992921290015 21.21235104321361 22-23 22.0662062405329 27.575376636618287 28.624298828865825 21.73411829398299 24-25 21.838987878472857 27.61069171682668 28.773401664450386 21.776918740250075 26-27 21.852669364047593 27.81168069580513 28.611474734657143 21.724175205490138 28-29 21.752320351386263 27.994963314674397 28.573067825526277 21.679648508413056 30-31 22.057413567669833 27.7735957927449 28.499823045069974 21.669167594515294 32-33 21.811770823607453 27.92736094517421 28.46738492472732 21.79348330649101 34-35 21.935291372340508 27.962104786704817 28.48502461828424 21.617579222670432 36-37 21.95192262358518 27.887363289975582 28.47843787157407 21.68227621486517 38-39 21.749225393618595 28.000217728072172 28.545264745544852 21.705292132764377 40-41 22.001804269328794 27.872966875338857 28.429392841797014 21.695836013535335 42-43 21.89131029822116 27.93967010103437 28.286441954468433 21.882577646276033 44-45 21.996815301457367 28.06636189610994 28.10927293103827 21.827549871394424 46-47 22.023692954221367 28.01332746215518 27.933690487316206 22.02928909630725 48-49 21.99387704240845 28.05585047171974 27.99729772274856 21.952974763123255 50-51 21.960924316358295 28.166300991486725 27.891235709314927 21.981538982840057 52-53 22.148114036690377 28.0695175587524 27.75508238397934 22.027286020577886 54-55 22.070088474038226 28.000710841453873 27.862524296430518 22.066676388077386 56-57 22.108004175854077 28.092600811998036 27.765817057425124 22.03357795472276 58-59 22.07420112297283 28.11338098535709 27.791866640887143 22.020551250782933 60-61 22.123361429020218 28.094601358646376 27.801301939225105 21.9807352731083 62-63 22.109604225337627 28.129955282020003 27.734151673578516 22.026288819063854 64-65 22.042447510031494 28.096979163499768 27.78997882309434 22.070594503374398 66-67 22.133051907481587 28.133906223948962 27.59018436537806 22.14285750319139 68-69 22.102944438493967 28.100571443754042 27.6735997277641 22.122884389987895 70-71 22.091356053990978 27.890788657637543 27.7386935648816 22.279161723489878 72-73 22.134494408353994 27.97591772880242 27.696702420416493 22.192885442427094 74-75 22.047260811696713 28.066128539689387 27.660605943193 22.226004705420895 76-77 22.145166541401252 28.0210338377884 27.595969152790317 22.237830468020025 78-79 22.13975050630542 28.036590139382906 27.580258343402715 22.24340101090897 80-81 22.12067953213501 28.060354120125247 27.591390491375282 22.227575856364464 82-83 22.21718350623506 27.97496670751198 27.684588350235224 22.12326143601773 84-85 22.297547610524116 27.96924145704331 27.60251370807385 22.130697224358727 86-87 22.11897456969037 27.96985659578228 27.684290905904046 22.226877928623303 88-89 22.19685933380276 27.953081594585317 27.63660519693233 22.2134538746796 90-91 22.237390778811157 27.975720578964662 27.643211387162076 22.1436772550621 92-93 22.244710828151053 27.96979080136709 27.660101209245518 22.125397161236343 94-95 22.0770892576894 28.027164138877787 27.717538155429907 22.178208448002906 96-97 22.137357908193923 28.018055825107723 27.722661219530504 22.12192504716785 98-99 22.393235721388397 28.58965694043069 27.786169440042265 21.230937898138652 100-101 26.405844074479372 35.652227030097485 28.36877981137907 9.573149084044074 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1467.0 1 1323.0 2 1923.5 3 2855.0 4 4015.5 5 6666.5 6 8826.5 7 10087.5 8 10624.0 9 10148.0 10 9134.5 11 8190.0 12 8886.5 13 11771.5 14 18286.5 15 27106.0 16 34279.0 17 38595.0 18 40216.5 19 39442.0 20 37721.5 21 36773.5 22 38222.0 23 43750.5 24 53874.0 25 68747.5 26 87892.0 27 109218.5 28 133021.5 29 158343.5 30 180613.5 31 202189.5 32 225659.5 33 247976.5 34 270035.0 35 291402.0 36 313193.5 37 334342.0 38 350765.5 39 364439.5 40 379557.0 41 392901.5 42 401371.0 43 409861.0 44 418092.0 45 424596.5 46 428112.5 47 427195.5 48 422939.5 49 414059.0 50 401715.0 51 385064.5 52 362991.5 53 340901.0 54 318648.5 55 292321.0 56 264723.5 57 236720.5 58 208316.0 59 180832.0 60 152569.5 61 124743.0 62 99145.5 63 76828.5 64 58035.5 65 43526.0 66 32804.0 67 25233.0 68 19435.5 69 13927.5 70 9837.5 71 7178.0 72 5077.0 73 3478.0 74 2438.5 75 1668.5 76 1136.5 77 772.5 78 494.5 79 324.0 80 227.0 81 161.5 82 125.0 83 93.5 84 61.0 85 37.0 86 26.5 87 22.0 88 16.0 89 12.0 90 9.5 91 8.0 92 6.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.7882256909125524E-4 3 0.004544197049848369 4 3.1556923957280335E-5 5 4.207589860970712E-5 6 0.0 7 0.0 8 5.469866819261926E-4 9 0.002535072891234854 10-11 7.941825862582218E-4 12-13 3.155692395728034E-4 14-15 9.99302591980544E-5 16-17 0.0013779856794679081 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 6.909369796380872E-4 32-33 6.982746321534202E-4 34-35 5.841074349867184E-5 36-37 7.635322475442026E-4 38-39 6.137697300721486E-4 40-41 2.1736870509060662E-5 42-43 1.0422123997055695E-4 44-45 9.647820185923475E-4 46-47 0.0 48-49 4.4878688360683766E-4 50-51 3.448228498470624E-5 52-53 2.3237268721642907E-5 54-55 8.104372573276301E-4 56-57 0.0010160270241798388 58-59 1.0223594830036345E-4 60-61 1.2782832339640584E-4 62-63 1.2317474277264498E-5 64-65 0.0 66-67 0.0 68-69 6.3869155094108E-6 70-71 4.27049827850391E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 2.8591282980725664E-4 80-81 0.0 82-83 0.0 84-85 1.4177708502343433E-5 86-87 2.6578880694372537E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.5270186480280807E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 206.0 20-21 588.0 22-23 1179.0 24-25 2872.0 26-27 4932.0 28-29 10898.0 30-31 26537.0 32-33 33319.0 34-35 45245.0 36-37 72283.0 38-39 86769.0 40-41 84448.0 42-43 93291.0 44-45 108275.0 46-47 108351.0 48-49 103098.0 50-51 94989.0 52-53 91340.0 54-55 97839.0 56-57 100958.0 58-59 100130.0 60-61 97229.0 62-63 92766.0 64-65 95038.0 66-67 100525.0 68-69 100842.0 70-71 99668.0 72-73 93707.0 74-75 95216.0 76-77 94490.0 78-79 99327.0 80-81 99504.0 82-83 94397.0 84-85 92468.0 86-87 95260.0 88-89 101143.0 90-91 106979.0 92-93 104567.0 94-95 114095.0 96-97 170403.0 98-99 755919.0 100-101 5535540.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.02140279395898 #Duplication Level Percentage of deduplicated Percentage of total 1 90.0461980042862 77.45900268591288 2 7.049317265961822 12.12784319915423 3 1.6703746516967481 4.310639121912748 4 0.609062444700046 2.0956962352886412 5 0.2690936316989046 1.157390584083036 6 0.12374737256263119 0.6386953547942523 7 0.06965835745736375 0.4194476737363824 8 0.04599974763265423 0.31655702556232085 9 0.028478956490111573 0.2204819808648768 >10 0.08635598410329277 1.1159512996443968 >50 0.0013830694968702624 0.07411642585683728 >100 2.934926370726797E-4 0.038797178491600276 >500 3.7021276289149054E-5 0.02538123469780904 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.103794930485356E-5 0.0 0.0 0.0 3 0.0 2.103794930485356E-5 0.0 0.0 0.0 4 0.0 6.311384791456068E-5 0.0 1.051897465242678E-5 0.0 5 1.051897465242678E-5 6.311384791456068E-5 0.0 2.103794930485356E-5 0.0 6 7.363282256698745E-5 6.311384791456068E-5 0.0 2.103794930485356E-5 0.0 7 7.363282256698745E-5 6.311384791456068E-5 0.0 2.103794930485356E-5 0.0 8 7.363282256698745E-5 6.311384791456068E-5 0.0 3.155692395728034E-5 3.155692395728034E-5 9 7.363282256698745E-5 1.472656451339749E-4 0.0 4.207589860970712E-5 5.25948732621339E-5 10-11 7.363282256698745E-5 1.472656451339749E-4 0.0 5.25948732621339E-5 5.25948732621339E-5 12-13 7.363282256698745E-5 1.472656451339749E-4 0.0 1.104492338504812E-4 5.25948732621339E-5 14-15 7.363282256698745E-5 2.4193641700581594E-4 0.0 1.2622769582912137E-4 7.889230989320084E-5 16-17 1.1570872117669459E-4 2.5245539165824274E-4 0.0 1.2622769582912137E-4 8.415179721941424E-5 18-19 1.1570872117669459E-4 2.84012315615523E-4 0.0 1.472656451339749E-4 8.415179721941424E-5 20-21 1.1570872117669459E-4 3.260882142252302E-4 0.0 1.7882256909125527E-4 8.941128454562764E-5 22-23 1.1570872117669459E-4 3.734236001611507E-4 0.0 1.998605183961088E-4 1.2096820850290797E-4 24-25 1.1570872117669459E-4 4.365374480757114E-4 1.051897465242678E-5 2.103794930485356E-4 1.472656451339749E-4 26-27 1.1570872117669459E-4 4.680943720329917E-4 1.051897465242678E-5 2.6297436631066953E-4 1.472656451339749E-4 28-29 1.1570872117669459E-4 4.733538593592051E-4 1.051897465242678E-5 6.521764284504604E-4 1.472656451339749E-4 30-31 1.1570872117669459E-4 5.575056565786193E-4 1.051897465242678E-5 0.0019880862093086616 1.472656451339749E-4 32-33 1.2622769582912137E-4 5.680246312310461E-4 1.051897465242678E-5 0.004907101675357093 1.6830359443882847E-4 34-35 1.3674667048154814E-4 6.574359157766737E-4 1.051897465242678E-5 0.0087202299868618 1.7882256909125527E-4 36-37 1.420061578077615E-4 7.678851496271549E-4 1.051897465242678E-5 0.014079647572273247 1.7882256909125527E-4 38-39 1.577846197864017E-4 7.994420735844352E-4 1.051897465242678E-5 0.02235282113640691 1.7882256909125527E-4 40-41 1.577846197864017E-4 9.098913074349164E-4 1.051897465242678E-5 0.03216176499979488 1.7882256909125527E-4 42-43 1.577846197864017E-4 9.3092925673977E-4 1.051897465242678E-5 0.04106607704307415 1.7882256909125527E-4 44-45 1.8934154374368204E-4 0.001009821566632971 1.051897465242678E-5 0.05070145782469708 1.7882256909125527E-4 46-47 1.998605183961088E-4 0.001067675927221318 1.051897465242678E-5 0.0614728878687821 1.7882256909125527E-4 48-49 1.998605183961088E-4 0.0010834543891999585 1.051897465242678E-5 0.07134494558008464 1.8934154374368204E-4 50-51 2.2615795502717577E-4 0.0011676061864193724 1.051897465242678E-5 0.08086461764053088 1.8934154374368204E-4 52-53 2.4193641700581594E-4 0.0011833846483980128 1.051897465242678E-5 0.09036325175167226 1.9460103106989544E-4 54-55 2.5245539165824274E-4 0.0012359795216601466 1.051897465242678E-5 0.09970410124302723 2.051200057223222E-4 56-57 2.629743663106695E-4 0.0012833149075960671 1.051897465242678E-5 0.10819817327486186 2.208984677009624E-4 58-59 2.6823385363688285E-4 0.0012990933695747075 1.051897465242678E-5 0.11612422067546543 2.3141744235338917E-4 60-61 3.1030975224659004E-4 0.0013411692681844145 1.051897465242678E-5 0.12374521781114864 2.5245539165824274E-4 62-63 3.4712616353008374E-4 0.0013674667048154815 1.051897465242678E-5 0.13088760160014642 2.5245539165824274E-4 64-65 3.4712616353008374E-4 0.0015568082485591635 1.051897465242678E-5 0.13793005512994616 2.5245539165824274E-4 66-67 3.5764513818251054E-4 0.0015883651725164438 1.051897465242678E-5 0.1449409517357886 2.577148789844561E-4 68-69 3.5764513818251054E-4 0.0016094031218212973 1.051897465242678E-5 0.15201496218954563 2.629743663106695E-4 70-71 3.5764513818251054E-4 0.0016514790204310045 1.051897465242678E-5 0.15852094801207156 2.734933409630963E-4 72-73 3.786830874873641E-4 0.001672516969735858 1.051897465242678E-5 0.16401711226796456 3.260882142252302E-4 74-75 3.786830874873641E-4 0.0017093333810193519 1.051897465242678E-5 0.16856656880513915 3.260882142252302E-4 76-77 3.786830874873641E-4 0.0017829662035863392 1.051897465242678E-5 0.17258481712236617 3.260882142252302E-4 78-79 3.786830874873641E-4 0.0017987446655649793 1.051897465242678E-5 0.17610341414360295 3.260882142252302E-4 80-81 3.786830874873641E-4 0.0018040041528911929 1.051897465242678E-5 0.17777067162601257 3.418666762038704E-4 82-83 3.786830874873641E-4 0.0018250421021960464 1.051897465242678E-5 0.1784912213897038 3.681641128349373E-4 84-85 3.786830874873641E-4 0.0018303015895222597 1.051897465242678E-5 0.17904346755895623 3.681641128349373E-4 86-87 3.892020621397909E-4 0.0018355610768484732 1.051897465242678E-5 0.17932222038724555 3.681641128349373E-4 88-89 3.892020621397909E-4 0.0019407508233727408 1.051897465242678E-5 0.17940111269713874 3.681641128349373E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9075 0.0 42.15473 1 GTATCAA 15620 0.0 35.27598 1 TCAACGC 17840 0.0 30.096287 4 ATCAACG 17915 0.0 29.92444 3 CAACGCA 18170 0.0 29.549683 5 AACGCAG 18940 0.0 28.392313 6 TATCAAC 19680 0.0 27.619019 2 ACGCAGA 22330 0.0 24.119135 7 CGCAGAG 22790 0.0 23.577688 8 TACATGG 24440 0.0 21.968233 2 GTACATG 25075 0.0 21.924868 1 ACATGGG 24920 0.0 20.746763 3 GCAGAGT 28095 0.0 19.06659 9 CATGGGG 17815 0.0 18.795815 4 AGAGTAC 24790 0.0 17.389875 10-11 GAGTACT 15555 0.0 17.11139 12-13 CAGAGTA 27360 0.0 16.613218 10-11 GTACTTT 18090 0.0 14.737003 14-15 AGTACTT 17635 0.0 14.56377 12-13 TATACTG 5525 0.0 14.419242 5 >>END_MODULE