##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140012_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8758163 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68882093196941 34.0 31.0 34.0 31.0 34.0 2 32.86998894631214 34.0 31.0 34.0 31.0 34.0 3 32.966135021693475 34.0 31.0 34.0 31.0 34.0 4 36.371699978637075 37.0 37.0 37.0 35.0 37.0 5 36.20625866406003 37.0 37.0 37.0 35.0 37.0 6 36.259951316274886 37.0 37.0 37.0 35.0 37.0 7 36.25661579945475 37.0 37.0 37.0 35.0 37.0 8 36.23847478061324 37.0 37.0 37.0 35.0 37.0 9 38.12504574303995 39.0 38.0 39.0 37.0 39.0 10-11 38.015679886295786 39.0 38.0 39.0 36.0 39.0 12-13 38.051702623027225 39.0 38.0 39.0 36.0 39.0 14-15 39.46802531535437 40.5 39.0 41.0 37.0 41.0 16-17 39.448186166436955 40.0 39.0 41.0 37.0 41.0 18-19 39.487176020816236 40.5 39.0 41.0 37.0 41.0 20-21 39.50079052062429 41.0 39.0 41.0 37.0 41.0 22-23 39.436346733518725 40.0 39.0 41.0 37.0 41.0 24-25 39.391372107729765 41.0 39.0 41.0 36.5 41.0 26-27 39.345941661931974 40.0 39.0 41.0 36.0 41.0 28-29 39.24805022123142 40.0 39.0 41.0 36.0 41.0 30-31 39.15054229218356 40.0 39.0 41.0 36.0 41.0 32-33 39.04389644198397 40.0 39.0 41.0 35.5 41.0 34-35 38.96758723148407 40.0 38.5 41.0 35.0 41.0 36-37 38.96672591939625 40.0 38.0 41.0 35.0 41.0 38-39 38.959340656474524 40.0 38.0 41.0 35.0 41.0 40-41 38.90275965168857 40.0 38.0 41.0 35.0 41.0 42-43 38.85831081439018 40.0 38.0 41.0 35.0 41.0 44-45 38.8130295933187 40.0 38.0 41.0 35.0 41.0 46-47 38.727312030114454 40.0 38.0 41.0 35.0 41.0 48-49 38.68558999039834 40.0 38.0 41.0 35.0 41.0 50-51 38.57303123210088 40.0 38.0 41.0 35.0 41.0 52-53 38.383702319068334 40.0 38.0 41.0 34.0 41.0 54-55 38.22331093843673 40.0 37.0 41.0 34.0 41.0 56-57 38.03955947592348 40.0 37.0 41.0 34.0 41.0 58-59 37.823930204212076 39.0 36.5 41.0 33.5 41.0 60-61 37.66883639543252 39.0 36.0 41.0 33.0 41.0 62-63 37.4731237955186 39.0 35.5 41.0 33.0 41.0 64-65 37.19158399794932 38.5 35.0 40.0 33.0 41.0 66-67 36.90051143251205 38.0 35.0 40.0 33.0 41.0 68-69 36.630468193888795 37.0 35.0 40.0 32.0 41.0 70-71 36.32666836167863 37.0 35.0 39.0 32.0 41.0 72-73 35.97606276910719 36.0 35.0 39.0 32.0 41.0 74-75 35.60190362376314 36.0 34.5 39.0 31.5 40.0 76-77 33.711198174175934 34.5 32.0 36.5 29.0 39.0 78-79 34.79402466905859 35.0 34.0 37.0 31.0 39.0 80-81 34.74790627109681 35.0 34.0 36.5 31.0 39.0 82-83 34.50105086040415 35.0 34.0 36.0 31.0 38.0 84-85 34.283527273030856 35.0 34.0 36.0 31.0 37.0 86-87 34.10496634875365 35.0 34.0 35.5 31.0 37.0 88-89 33.97705098760312 35.0 34.0 35.0 31.0 36.5 90-91 33.85779116011177 35.0 34.0 35.0 31.0 36.0 92-93 33.789837986627006 35.0 34.0 35.0 31.0 36.0 94-95 33.72162531581469 35.0 34.0 35.0 31.0 36.0 96-97 33.696789800014656 35.0 34.0 35.0 31.0 35.0 98-99 33.73898048541872 35.0 34.0 35.0 31.0 35.0 100-101 32.45302007292325 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 14.0 20 23.0 21 129.0 22 504.0 23 1689.0 24 4423.0 25 9707.0 26 18245.0 27 30669.0 28 45956.0 29 64818.0 30 88147.0 31 116725.0 32 156542.0 33 218823.0 34 340361.0 35 559465.0 36 1103496.0 37 2243197.0 38 2667631.0 39 1068904.0 40 18693.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.273298293260815 19.34417068967545 12.841928153198337 24.540602863865402 2 15.443749789481675 20.781946405317562 40.07079124631986 23.703512558880906 3 18.913083790299083 25.383842093099517 29.598055120893818 26.105018995707578 4 12.89220566877061 16.988785315637074 37.92999899522274 32.18901002036957 5 13.596665051029582 37.56357360654156 35.29939810382438 13.540363238604478 6 31.438601907728824 36.937346336212286 18.18432701012758 13.439724745931311 7 27.631502176883437 31.83137833812867 22.69056878708469 17.8465506979032 8 25.44675362666013 36.16792722918953 20.750281424327373 17.63503771982297 9 26.15724755239134 16.097365863372374 20.483228011714175 37.26215857252211 10-11 25.083959487527707 26.120081163787596 28.415415319293825 20.380544029390872 12-13 25.616118403249637 23.54681440278744 28.681958425409604 22.155108768553315 14-15 22.640461892092617 24.93752818446408 25.93659767968108 26.485412243762223 16-17 22.588606878777316 28.09401168457916 26.558074244702496 22.759307191941026 18-19 22.599956178025003 27.477240375635848 28.039002014463538 21.88380143187561 20-21 23.240304329427744 26.732822722581883 27.872333914676588 22.154539033313778 22-23 23.062907402724502 26.656099015801633 27.73379157572513 22.547202005748737 24-25 22.82239912028632 26.738406473771686 27.812253585600764 22.626940820341233 26-27 22.78097781206313 26.929482430760665 27.695550302055917 22.59398945512028 28-29 22.73471788880992 26.989795025993995 27.710204299535064 22.565282785661022 30-31 22.9539020530018 26.844625578700427 27.60192336100198 22.599549007295792 32-33 22.69675174020576 27.05923081313622 27.627993929751586 22.616023516906434 34-35 22.837255946565687 27.025581880039027 27.645413274716617 22.49174889867867 36-37 22.86369522089558 26.976411325447415 27.55969317093211 22.6002002827249 38-39 22.741661411742385 27.040288295376968 27.67139656355854 22.546653729322106 40-41 22.887138253179288 26.928355667180714 27.57911688027606 22.605389199363934 42-43 22.80521196268407 27.033418901842943 27.434209808480865 22.727159326992123 44-45 22.889112231153533 27.089497353798652 27.28938114602658 22.73200926902123 46-47 22.94397104490106 27.13647213420761 27.05216314084582 22.86739368004551 48-49 22.86116778493279 27.21156162544302 27.072060203948105 22.855210385676084 50-51 22.84261596851064 27.314111269143094 27.019047021233273 22.824225741112997 52-53 23.055387265697426 27.156942128077922 26.87160819229881 22.91606241392584 54-55 22.939283822250015 27.115531358308587 26.963479518364174 22.981705301077223 56-57 22.9542055664482 27.224150919852285 26.93849625821199 22.883147255487522 58-59 22.94838644857374 27.237700962782135 26.926869381129958 22.887043207514168 60-61 22.978905065547345 27.22495187388167 26.956552637023947 22.83959042354704 62-63 23.013961557212152 27.28473914266604 26.837963872006583 22.86333542811522 64-65 22.97586426886854 27.27325851980066 26.859805680041415 22.891071531289384 66-67 23.00006410119724 27.26662922699039 26.74099940962203 22.992307262190334 68-69 22.90830594692054 27.21577766927211 26.882390720590944 22.993525663216406 70-71 22.930667434297675 27.092392521317137 26.873973801624217 23.102966242760967 72-73 22.974153834071554 27.12838467053106 26.81127270456503 23.086188790832356 74-75 22.782710643418692 27.2582014229134 26.887995435480704 23.071092498187195 76-77 23.005900069422815 27.170413004859594 26.77670386036096 23.04698306535662 78-79 22.936055071828815 27.143886816243256 26.788523879086558 23.13153423284137 80-81 22.927171079634952 27.22591558821202 26.80854040440555 23.038372927747478 82-83 22.988847020528905 27.151914231353857 26.911803318557297 22.947435429559942 84-85 22.99897571341524 27.21089747743039 26.820110669542725 22.970016139611644 86-87 22.89718439240263 27.191712830715964 26.910484114936096 23.00061866194531 88-89 22.91332962612454 27.183949211587265 26.85959203764275 23.043129124645446 90-91 22.99536238226719 27.181722444706153 26.87379380900421 22.94912136402245 92-93 23.03477741713352 27.148707549886662 26.877283799194355 22.939231233785463 94-95 22.8485063679817 27.20296737380581 26.971603587700375 22.976922670512113 96-97 22.921326783273045 27.187915111889044 26.944497433129705 22.946260671708202 98-99 23.191234723978088 27.80297040897084 26.947319951075617 22.058474915975456 100-101 24.03242221082235 30.28267170585371 23.921197442156004 21.76370864116794 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1385.0 1 1258.5 2 1842.0 3 2757.0 4 3750.5 5 6103.0 6 8096.0 7 9364.0 8 10169.5 9 9860.5 10 8662.0 11 7420.5 12 7814.5 13 10252.5 14 16040.5 15 23886.5 16 30234.5 17 34016.5 18 35089.5 19 33725.5 20 31088.0 21 28739.0 22 28423.0 23 31406.5 24 37629.0 25 47442.5 26 59872.0 27 73661.0 28 90137.0 29 108373.5 30 125735.0 31 143570.5 32 162252.5 33 179468.5 34 194416.5 35 209449.5 36 227427.0 37 245277.0 38 262574.5 39 277061.0 40 288727.0 41 302516.0 42 315070.5 43 327311.0 44 341980.5 45 357837.5 46 370277.5 47 378391.0 48 384139.0 49 384692.0 50 382479.5 51 379136.5 52 372038.0 53 362254.0 54 349546.5 55 330426.0 56 307880.5 57 281989.5 58 252357.0 59 221005.0 60 186311.5 61 153404.5 62 124364.5 63 97542.5 64 73806.5 65 55365.5 66 42226.5 67 32419.0 68 24999.5 69 18397.0 70 13213.0 71 9635.0 72 6773.5 73 4701.5 74 3279.0 75 2169.5 76 1440.0 77 932.0 78 594.5 79 410.0 80 309.0 81 228.5 82 173.5 83 117.5 84 75.5 85 61.0 86 50.5 87 41.0 88 28.0 89 16.5 90 8.0 91 4.0 92 3.5 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.055225507906167E-4 3 0.0045100781979052 4 3.425375846510278E-5 5 9.134335590694076E-5 6 0.0 7 0.0 8 4.110451015812334E-4 9 0.002591867723859444 10-11 7.992543641857316E-4 12-13 2.8544798720918986E-4 14-15 1.5414191309296254E-4 16-17 0.0014158220165575819 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 5.265502971432072E-4 32-33 6.309989717584938E-4 34-35 2.301040398158224E-5 36-37 7.567154597950433E-4 38-39 5.754806527764239E-4 40-41 2.9275053649463317E-5 42-43 9.436610190324043E-5 44-45 9.695783779500983E-4 46-47 0.0 48-49 5.21724707832647E-4 50-51 1.2247902194621983E-5 52-53 1.2355326081457057E-5 54-55 5.234115114890696E-4 56-57 7.673081446614851E-4 58-59 1.0161412771701888E-4 60-61 1.0903486633576082E-4 62-63 1.2952070990819184E-5 64-65 1.96097874540894E-5 66-67 6.601564676453354E-6 68-69 0.0 70-71 4.6537862901749056E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 2.954548907914308E-4 80-81 0.0 82-83 0.0 84-85 2.9119723851834768E-5 86-87 3.0185723183666135E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 2.330885877263475E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 191.0 20-21 523.0 22-23 1115.0 24-25 2820.0 26-27 4162.0 28-29 8948.0 30-31 18751.0 32-33 23092.0 34-35 31257.0 36-37 50268.0 38-39 62227.0 40-41 61151.0 42-43 68365.0 44-45 81268.0 46-47 82166.0 48-49 79031.0 50-51 72174.0 52-53 68519.0 54-55 73259.0 56-57 76684.0 58-59 77194.0 60-61 76123.0 62-63 71650.0 64-65 73703.0 66-67 78534.0 68-69 81285.0 70-71 80403.0 72-73 75193.0 74-75 75698.0 76-77 74776.0 78-79 80688.0 80-81 82446.0 82-83 77288.0 84-85 76403.0 86-87 79508.0 88-89 85645.0 90-91 92876.0 92-93 92884.0 94-95 103329.0 96-97 162614.0 98-99 750015.0 100-101 5443937.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.15257828218823 #Duplication Level Percentage of deduplicated Percentage of total 1 87.86051599197931 72.17967917944532 2 8.076971311910285 13.270880359693965 3 2.172882809328029 5.35523775274026 4 0.8604825947739122 2.827634549104971 5 0.4140322882570645 1.7006909986196004 6 0.20620347835970348 1.0164088438803027 7 0.1252509136172078 0.7202779840097281 8 0.07671424656052471 0.5041818516738076 9 0.05129432372538222 0.3792564850753231 >10 0.15278840359528023 1.8598870981103914 >50 0.0024975114907564563 0.13275137160435016 >100 3.6612640252198513E-4 0.05311352604198702 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.425375846510278E-5 0.0 0.0 0.0 3 0.0 3.425375846510278E-5 0.0 2.283583897673519E-5 0.0 4 0.0 7.992543641857316E-5 0.0 4.567167795347038E-5 0.0 5 0.0 7.992543641857316E-5 0.0 4.567167795347038E-5 0.0 6 0.0 7.992543641857316E-5 0.0 9.134335590694076E-5 0.0 7 0.0 7.992543641857316E-5 0.0 9.134335590694076E-5 0.0 8 0.0 7.992543641857316E-5 0.0 1.0276127539530835E-4 0.0 9 0.0 1.5985087283714632E-4 0.0 1.7126879232551393E-4 0.0 10-11 0.0 1.5985087283714632E-4 0.0 2.8544798720918986E-4 0.0 12-13 0.0 1.5985087283714632E-4 0.0 3.4824654439521166E-4 0.0 14-15 0.0 2.626121482324547E-4 0.0 3.653734236277631E-4 0.0 16-17 0.0 2.7403006772082225E-4 0.0 3.996271820928658E-4 0.0 18-19 0.0 2.9115694695337367E-4 0.0 4.852615782556228E-4 0.0 20-21 0.0 3.082838261859251E-4 0.0 6.336945316044015E-4 0.0 22-23 0.0 3.5395550413939547E-4 0.0 7.478737264880774E-4 0.0 24-25 0.0 4.167540613254172E-4 0.0 7.878364446973641E-4 0.0 26-27 0.0 4.395899003021524E-4 0.0 8.73470840860121E-4 0.0 28-29 5.708959744183797E-6 4.5100781979052E-4 0.0 0.0011246650696042082 0.0 30-31 1.1417919488367594E-5 5.138063769765418E-4 0.0 0.0020095538299526967 0.0 32-33 1.1417919488367594E-5 5.138063769765418E-4 0.0 0.003585226719347425 0.0 34-35 1.1417919488367594E-5 6.108586926276663E-4 0.0 0.005617616388276857 0.0 36-37 1.1417919488367594E-5 7.079110082787909E-4 0.0 0.008654782972182636 0.0 38-39 1.1417919488367594E-5 7.250378875113422E-4 0.0 0.01347314499627376 0.0 40-41 1.1417919488367594E-5 8.106722836740992E-4 0.0 0.01894232843120184 0.0 42-43 1.1417919488367594E-5 8.44926042139202E-4 0.0 0.02394908612685103 0.0 44-45 1.1417919488367594E-5 9.876500357437969E-4 0.0 0.02928696348766288 0.0 46-47 1.1417919488367594E-5 0.0011075381903716567 0.0 0.03546405793086975 0.0 48-49 1.1417919488367594E-5 0.0011075381903716567 0.0 0.041829548045634685 0.0 50-51 1.1417919488367594E-5 0.0012274263449995166 0.0 0.04775544826009746 0.0 52-53 1.1417919488367594E-5 0.0012331353047437003 0.0 0.05331597505093248 0.0 54-55 1.1417919488367594E-5 0.001238844264487884 0.0 0.058847957043046586 0.0 56-57 1.1417919488367594E-5 0.0012445532242320678 0.0 0.06496796188881163 5.708959744183797E-6 58-59 1.1417919488367594E-5 0.0012559711437204353 0.0 0.0709281158617395 1.1417919488367594E-5 60-61 1.1417919488367594E-5 0.0012559711437204353 0.0 0.07636875449794667 1.1417919488367594E-5 62-63 1.1417919488367594E-5 0.0012788069826971706 0.0 0.08174088561722362 1.1417919488367594E-5 64-65 1.1417919488367594E-5 0.001495747452976155 0.0 0.08731853928729119 1.1417919488367594E-5 66-67 1.1417919488367594E-5 0.0015071653724645225 0.0 0.09299324527300988 1.1417919488367594E-5 68-69 1.1417919488367594E-5 0.001552837050417993 0.0 0.09874216773540297 1.1417919488367594E-5 70-71 1.1417919488367594E-5 0.0015927997686272794 0.0 0.10442829164061002 1.1417919488367594E-5 72-73 1.1417919488367594E-5 0.0016042176881156472 0.0 0.10902400423467798 1.1417919488367594E-5 74-75 1.1417919488367594E-5 0.0016156356076040147 0.0 0.11283758934379276 1.1417919488367594E-5 76-77 1.1417919488367594E-5 0.0016727252050458526 0.0 0.11631434582800068 1.1417919488367594E-5 78-79 1.1417919488367594E-5 0.0017126879232551393 0.0 0.11963125143937148 1.1417919488367594E-5 80-81 1.1417919488367594E-5 0.0017126879232551393 0.0 0.12088722258309191 1.1417919488367594E-5 82-83 1.1417919488367594E-5 0.0017126879232551393 0.0 0.12142957375878938 1.1417919488367594E-5 84-85 1.1417919488367594E-5 0.0017126879232551393 0.0 0.12200046973320774 1.1417919488367594E-5 86-87 1.1417919488367594E-5 0.0017126879232551393 0.0 0.12224024604246347 1.1417919488367594E-5 88-89 1.1417919488367594E-5 0.001781195440185345 0.0 0.12228591772041694 1.1417919488367594E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8725 0.0 43.871258 1 GTATCAA 14965 0.0 34.757835 1 TCAACGC 17200 0.0 29.375889 4 ATCAACG 17270 0.0 29.232859 3 CAACGCA 17555 0.0 28.782007 5 AACGCAG 18285 0.0 27.72597 6 TATCAAC 18795 0.0 27.29028 2 GTACATG 24755 0.0 24.345009 1 ACGCAGA 21330 0.0 23.668205 7 TACATGG 24845 0.0 23.26395 2 CGCAGAG 22055 0.0 22.890175 8 ACATGGG 25220 0.0 22.480087 3 CATGGGG 20065 0.0 20.009481 4 GCAGAGT 27085 0.0 18.623503 9 GAGTACT 14265 0.0 17.769087 12-13 AGAGTAC 23570 0.0 17.132854 10-11 CAGAGTA 26130 0.0 16.756422 10-11 ATGGGGG 13235 0.0 16.517513 5 GAGTACA 17815 0.0 16.210146 1 GTACTTT 16355 0.0 15.53783 14-15 >>END_MODULE