##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140007_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7907827 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.75464245740328 34.0 31.0 34.0 31.0 34.0 2 32.93346326367534 34.0 31.0 34.0 31.0 34.0 3 33.02984852855279 34.0 33.0 34.0 31.0 34.0 4 36.41299955095123 37.0 37.0 37.0 35.0 37.0 5 36.259897820222925 37.0 37.0 37.0 35.0 37.0 6 36.314838071192 37.0 37.0 37.0 35.0 37.0 7 36.31518102254893 37.0 37.0 37.0 35.0 37.0 8 36.30108347084477 37.0 37.0 37.0 35.0 37.0 9 38.19846362344548 39.0 39.0 39.0 37.0 39.0 10-11 38.09783149024378 39.0 38.0 39.0 37.0 39.0 12-13 38.13450205726554 39.0 38.0 39.0 37.0 39.0 14-15 39.57417397977978 41.0 39.0 41.0 37.0 41.0 16-17 39.55741665820459 41.0 39.0 41.0 37.0 41.0 18-19 39.60471214152763 41.0 39.5 41.0 37.0 41.0 20-21 39.619539464778924 41.0 40.0 41.0 37.0 41.0 22-23 39.55690302737954 41.0 39.0 41.0 37.0 41.0 24-25 39.51482086908829 41.0 39.0 41.0 37.0 41.0 26-27 39.47847317839601 41.0 39.0 41.0 37.0 41.0 28-29 39.38382674132089 40.5 39.0 41.0 36.5 41.0 30-31 39.29205441349727 40.0 39.0 41.0 36.0 41.0 32-33 39.18829365364515 40.0 39.0 41.0 36.0 41.0 34-35 39.11686272113981 40.0 39.0 41.0 35.0 41.0 36-37 39.11976415448893 40.0 39.0 41.0 35.0 41.0 38-39 39.111088295211275 40.0 39.0 41.0 35.0 41.0 40-41 39.06535261214741 40.0 39.0 41.0 35.0 41.0 42-43 39.02765869690131 40.0 39.0 41.0 35.0 41.0 44-45 38.9909985454923 40.0 38.5 41.0 35.0 41.0 46-47 38.916838926534325 40.0 38.0 41.0 35.0 41.0 48-49 38.884678314062896 40.0 38.0 41.0 35.0 41.0 50-51 38.790372937788106 40.0 38.0 41.0 35.0 41.0 52-53 38.61689446741039 40.0 38.0 41.0 35.0 41.0 54-55 38.47963313953659 40.0 38.0 41.0 34.5 41.0 56-57 38.31517730954888 40.0 37.0 41.0 34.0 41.0 58-59 38.12492345270401 40.0 37.0 41.0 34.0 41.0 60-61 37.99285997183978 39.5 36.5 41.0 34.0 41.0 62-63 37.81586828937955 39.0 36.0 41.0 34.0 41.0 64-65 37.55847916231308 39.0 35.5 41.0 33.5 41.0 66-67 37.28474270015685 39.0 35.0 40.0 33.0 41.0 68-69 37.02734623200615 38.0 35.0 40.0 33.0 41.0 70-71 36.73047413923828 37.0 35.0 40.0 33.0 41.0 72-73 36.381426437010106 37.0 35.0 39.0 33.0 41.0 74-75 36.008087797766926 36.0 35.0 39.0 32.0 40.5 76-77 34.086460887378244 34.5 32.5 36.5 29.0 39.0 78-79 35.16017269880672 35.0 34.0 37.0 31.5 39.0 80-81 35.09128447398774 35.0 34.0 37.0 32.0 39.0 82-83 34.820590512254626 35.0 34.0 36.5 32.0 39.0 84-85 34.58167801196328 35.0 34.0 36.0 31.5 37.0 86-87 34.37658770874616 35.0 34.0 36.0 31.0 37.0 88-89 34.22254314809804 35.0 34.0 35.5 31.0 37.0 90-91 34.08367440301325 35.0 34.0 35.0 31.0 36.0 92-93 33.999427806332335 35.0 34.0 35.0 31.0 36.0 94-95 33.919795647491874 35.0 34.0 35.0 31.0 36.0 96-97 33.87888772900419 35.0 34.0 35.0 31.0 36.0 98-99 33.901689534905984 35.0 34.0 35.0 31.0 35.0 100-101 32.65153006392579 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 24.0 21 73.0 22 343.0 23 1207.0 24 3196.0 25 7217.0 26 13454.0 27 22551.0 28 34096.0 29 48600.0 30 65955.0 31 89105.0 32 120508.0 33 167835.0 34 261011.0 35 432478.0 36 865233.0 37 1888276.0 38 2611663.0 39 1247061.0 40 27934.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.65060426840395 19.903723235219992 12.933034574479182 24.512637921896875 2 15.0265313557617 21.426568888262786 40.411438661991625 23.135461093983885 3 18.354534991493495 26.15641470562236 30.323077683797834 25.165972619086315 4 12.382366531585292 17.5454796299261 39.08830315689799 30.983850681590617 5 13.009961651908078 38.05142374799645 35.869660747424234 13.068953852671248 6 30.168844108501613 38.02724819346706 18.781872693977753 13.022035004053578 7 26.542133508990524 32.50817196683741 23.51971028197759 17.429984242194475 8 24.750236065377244 36.463884178681546 21.516036069348022 17.269843686593195 9 25.903232410936933 16.128239230302594 21.117751254579915 36.85077710418056 10-11 24.294177045191713 26.588064501239607 29.237621802901074 19.880136650667605 12-13 24.921898261266147 24.163159525705936 29.302740479662187 21.612201733365733 14-15 22.023179345599342 25.564656537279067 26.679148831991036 25.733015285130563 16-17 21.802417337615402 28.665436305943516 27.36385182659754 22.16829452984354 18-19 21.826704099621804 28.090953431328224 28.81565947257066 21.26668299647931 20-21 22.5773520828242 27.366262234681415 28.61277310382395 21.443612578670436 22-23 22.2968716584337 27.314556547316798 28.44811701177926 21.94045478247024 24-25 22.047203407662764 27.3472538972243 28.599044638578413 22.00649805653452 26-27 22.021261088720394 27.564735553599633 28.456704705863896 21.957298651816078 28-29 21.93356024513362 27.719032496296954 28.45038687816234 21.89702038040709 30-31 22.22603605824873 27.534342117617733 28.382374692821184 21.857247131312356 32-33 21.98560873234144 27.702885143685123 28.29997032911797 22.011535794855472 34-35 22.104529060344998 27.705460770833174 28.35257051312056 21.837439655701267 36-37 22.113413903108018 27.618819378653058 28.337219141307457 21.93054757693147 38-39 21.953603466670284 27.771893715111112 28.382188264618886 21.892314553599725 40-41 22.162090588072243 27.61319279652332 28.292918915014877 21.93179770038956 42-43 22.068239727085707 27.722045492495283 28.121070123738512 22.088644656680497 44-45 22.106359569801523 27.8595633093813 27.993447176355463 22.040629944461713 46-47 22.183485010661812 27.759674089398466 27.820537493658946 22.236303406280776 48-49 22.15421335691255 27.86883191782404 27.798873169035144 22.178081556228268 50-51 22.132238985788998 27.982866022288544 27.709742340023546 22.17515265189891 52-53 22.30380757965127 27.882454033656444 27.585254017589335 22.22848436910295 54-55 22.237604313565154 27.790980771842694 27.686451605244404 22.284963309347745 56-57 22.256834892621118 27.88976700540371 27.61298877710907 22.240409324866107 58-59 22.220471733852225 27.96872020843486 27.579985678990525 22.230822378722387 60-61 22.284957854891903 27.911143143187083 27.618327385562143 22.185571616358867 62-63 22.2697601762502 27.951348378887708 27.564348174753807 22.214543270108283 64-65 22.251505779560134 27.935391856951973 27.552090437111527 22.26101192637637 66-67 22.292756013710814 27.91008939890552 27.46551000871017 22.331644578673494 68-69 22.262755050181195 27.930729144270476 27.525880329468382 22.280635476079944 70-71 22.238794241252293 27.736173014939382 27.567252687165382 22.457780056642942 72-73 22.299777365589375 27.797775267053627 27.53872709383782 22.363720273519178 74-75 22.138446314675654 27.933055737897654 27.496887338708888 22.431610608717804 76-77 22.280475315621924 27.84996735957875 27.44277136059303 22.426785964206296 78-79 22.283901091975476 27.877922593112185 27.415937602502993 22.422238712409342 80-81 22.225843463402818 27.91717837951881 27.433162053328402 22.42381610374997 82-83 22.323753136859878 27.83507552464925 27.512312788457905 22.32885855003297 84-85 22.387386352673094 27.838314972817358 27.422562781938716 22.35173589257083 86-87 22.21512134795258 27.860843810624903 27.49700133078638 22.42703351063614 88-89 22.28746710402163 27.83903015621944 27.46321826460204 22.41028447515689 90-91 22.328413565239348 27.873933209849405 27.481306549944605 22.316346674966645 92-93 22.33937150308159 27.82695466063796 27.494983073869466 22.338690762410984 94-95 22.202615615696782 27.89022068342638 27.52112938363827 22.386034317238565 96-97 22.257565086252733 27.87567544882334 27.57350813345577 22.293251331468163 98-99 22.493985900886276 28.50596446104372 27.592300659882035 21.407748978187968 100-101 26.55325401116615 35.518860137143434 28.22050474134783 9.707381110342588 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1630.0 1 1415.5 2 1891.0 3 2798.0 4 3844.0 5 6106.0 6 8029.5 7 9446.5 8 10252.0 9 9850.5 10 8864.0 11 7921.0 12 8484.0 13 11066.0 14 16929.0 15 24672.5 16 30695.0 17 34200.0 18 35198.0 19 34163.0 20 32579.0 21 31703.0 22 32890.0 23 37467.0 24 45791.5 25 57639.0 26 72597.5 27 89188.5 28 107602.5 29 127373.5 30 144422.5 31 160754.5 32 178243.0 33 195139.0 34 211753.5 35 226918.0 36 243649.5 37 258321.0 38 269129.5 39 279025.0 40 289970.0 41 300777.5 42 308229.5 43 315805.5 44 323830.0 45 330202.0 46 332754.0 47 333822.5 48 334911.0 49 332530.0 50 327477.5 51 319952.5 52 307231.0 53 292658.0 54 277362.5 55 259022.0 56 239940.5 57 218085.0 58 193717.0 59 169874.5 60 144820.5 61 119400.5 62 95688.5 63 75233.0 64 57834.5 65 43923.5 66 33441.5 67 25791.0 68 19854.0 69 14276.5 70 9937.0 71 7237.0 72 5252.5 73 3675.5 74 2563.5 75 1753.0 76 1206.5 77 820.5 78 526.5 79 354.5 80 258.0 81 186.5 82 136.5 83 81.5 84 44.5 85 28.0 86 21.0 87 20.5 88 21.0 89 18.0 90 13.0 91 9.0 92 6.5 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.7703978602465634E-4 3 0.004400703252612886 4 1.2645699001761167E-5 5 2.5291398003522333E-5 6 0.0 7 0.0 8 7.587419401056699E-4 9 0.0025291398003522334 10-11 9.104903281268041E-4 12-13 4.109852175572379E-4 14-15 1.3910268901937283E-4 16-17 0.001504838181209579 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.290896763818183E-4 32-33 8.135908314415228E-4 34-35 1.2754070652959952E-5 36-37 8.458248961765959E-4 38-39 6.841386204254361E-4 40-41 3.9040397441656726E-5 42-43 7.217172461421917E-5 44-45 0.0010201833335696095 46-47 0.0 48-49 6.772995929768096E-4 50-51 2.738149903302236E-5 52-53 1.382711337921861E-5 54-55 7.052823412803989E-4 56-57 0.0010517335003307313 58-59 1.3562895572556924E-4 60-61 1.4440406104652802E-4 62-63 3.650461852783152E-5 64-65 0.0 66-67 7.465648312420062E-6 68-69 0.0 70-71 3.6728329195402437E-4 72-73 0.0 74-75 1.5675975086799835E-5 76-77 0.0 78-79 4.418429445956261E-4 80-81 0.0 82-83 8.247839663976414E-6 84-85 2.505889257403107E-5 86-87 3.046042970189731E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.7959333065799135E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 161.0 20-21 445.0 22-23 993.0 24-25 2420.0 26-27 3811.0 28-29 9074.0 30-31 19020.0 32-33 24116.0 34-35 32752.0 36-37 52143.0 38-39 63142.0 40-41 62611.0 42-43 69603.0 44-45 82152.0 46-47 82972.0 48-49 79603.0 50-51 73045.0 52-53 70932.0 54-55 75724.0 56-57 79021.0 58-59 79294.0 60-61 77688.0 62-63 74008.0 64-65 75825.0 66-67 80795.0 68-69 81424.0 70-71 80933.0 72-73 76089.0 74-75 77328.0 76-77 76484.0 78-79 81094.0 80-81 81534.0 82-83 76784.0 84-85 76285.0 86-87 78931.0 88-89 83744.0 90-91 88826.0 92-93 86512.0 94-95 93818.0 96-97 143194.0 98-99 639668.0 100-101 4713829.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.27058644082696 #Duplication Level Percentage of deduplicated Percentage of total 1 89.55389655060479 76.36313276931222 2 7.288598190535156 12.43006084076966 3 1.8320370290043217 4.686566155335265 4 0.624208791194334 2.1290659874664226 5 0.2857032662070622 1.2181042528767945 6 0.14743403817015074 0.7543072137664811 7 0.0914255208097099 0.5457135442571394 8 0.04678188358192802 0.31912949182699973 9 0.03400999913905328 0.2610047314295184 >10 0.09459500774361165 1.1755279310281677 >50 0.0010170318617304113 0.05696986899006719 >100 2.6975653503024776E-4 0.04324662425545311 >500 2.293461316175975E-5 0.017170588685769574 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.79370970052835E-5 0.0 1.2645699001761167E-5 0.0 3 0.0 3.79370970052835E-5 0.0 2.5291398003522333E-5 0.0 4 0.0 5.058279600704467E-5 0.0 2.5291398003522333E-5 0.0 5 0.0 5.058279600704467E-5 0.0 2.5291398003522333E-5 0.0 6 0.0 5.058279600704467E-5 0.0 2.5291398003522333E-5 2.5291398003522333E-5 7 0.0 6.322849500880583E-5 0.0 2.5291398003522333E-5 2.5291398003522333E-5 8 0.0 6.322849500880583E-5 0.0 2.5291398003522333E-5 3.79370970052835E-5 9 0.0 1.51748388021134E-4 0.0 3.79370970052835E-5 5.058279600704467E-5 10-11 0.0 1.51748388021134E-4 0.0 6.322849500880583E-5 5.058279600704467E-5 12-13 0.0 1.5807123752201456E-4 0.0 8.219704351144759E-5 5.058279600704467E-5 14-15 0.0 2.8452822753962623E-4 0.0 9.484274251320875E-5 8.851989301232816E-5 16-17 0.0 3.03496776042268E-4 0.0 1.0116559201408933E-4 1.138112910158505E-4 18-19 0.0 3.0981962554314855E-4 0.0 1.2645699001761167E-4 1.2645699001761167E-4 20-21 0.0 3.161424750440292E-4 0.0 1.51748388021134E-4 1.2645699001761167E-4 22-23 0.0 3.161424750440292E-4 0.0 1.833626355255369E-4 1.4542553852025343E-4 24-25 0.0 3.4775672254843207E-4 0.0 2.4026828103346215E-4 1.6439408702289515E-4 26-27 0.0 3.667252710510738E-4 0.0 2.7188252853786504E-4 1.6439408702289515E-4 28-29 0.0 3.667252710510738E-4 0.0 6.196392510862971E-4 1.6439408702289515E-4 30-31 0.0 4.109852175572379E-4 0.0 0.001884209151262414 1.7703978602465632E-4 32-33 0.0 4.1730806705811847E-4 0.0 0.003977072336053887 2.0233118402817867E-4 34-35 0.0 4.615680135642826E-4 0.0 0.007208048431003864 2.0233118402817867E-4 36-37 1.2645699001761167E-5 5.058279600704467E-4 0.0 0.011216735014562156 2.0233118402817867E-4 38-39 1.2645699001761167E-5 5.31119358073969E-4 0.0 0.017855726990486768 2.1497688302993983E-4 40-41 1.2645699001761167E-5 6.196392510862971E-4 0.0 0.025133326766000316 2.27622582031701E-4 42-43 1.2645699001761167E-5 6.512534985907E-4 0.0 0.03228446955149626 2.4026828103346215E-4 44-45 1.2645699001761167E-5 7.5874194010567E-4 0.0 0.039701172016029185 2.5291398003522334E-4 46-47 1.2645699001761167E-5 8.346161341162369E-4 0.0 0.048919886588313075 2.592368295361039E-4 48-49 1.2645699001761167E-5 8.346161341162369E-4 0.0 0.05794891567557055 3.03496776042268E-4 50-51 1.2645699001761167E-5 9.990102211391322E-4 0.0 0.0664341797057523 3.03496776042268E-4 52-53 1.2645699001761167E-5 9.990102211391322E-4 0.0 0.07419863889283365 3.7304812055195444E-4 54-55 1.2645699001761167E-5 0.0010116559201408934 0.0 0.08159004995936306 4.362766155607602E-4 56-57 1.2645699001761167E-5 0.0010369473181444156 0.0 0.08999943979553422 4.4259946506164084E-4 58-59 1.2645699001761167E-5 0.0010369473181444156 0.0 0.0982760497921869 4.5524516406340203E-4 60-61 1.2645699001761167E-5 0.00108120726465058 0.0 0.10608476892577443 4.6789086306516317E-4 62-63 1.2645699001761167E-5 0.001138112910158505 0.0 0.11398200795237427 4.805365620669243E-4 64-65 1.2645699001761167E-5 0.0013530897931884449 0.0 0.12159471875143449 4.805365620669243E-4 66-67 1.2645699001761167E-5 0.001365735492190206 0.0 0.1300989513301189 4.805365620669243E-4 68-69 1.2645699001761167E-5 0.0013910268901937283 0.0 0.1382238129387504 4.805365620669243E-4 70-71 1.2645699001761167E-5 0.0014036725891954894 0.0 0.14581123233980714 5.184736590722078E-4 72-73 1.2645699001761167E-5 0.0014036725891954894 0.0 0.1516788366766243 5.943478530827748E-4 74-75 1.2645699001761167E-5 0.0014352868366998923 0.0 0.15666124208331822 5.943478530827748E-4 76-77 1.2645699001761167E-5 0.0014732239337051757 0.0 0.16078373995789236 5.943478530827748E-4 78-79 1.2645699001761167E-5 0.0014795467832060564 0.0 0.16440040987239604 5.943478530827748E-4 80-81 1.2645699001761167E-5 0.0014795467832060564 0.0 0.16612654778613645 6.006707025836554E-4 82-83 1.2645699001761167E-5 0.0014795467832060564 0.0 0.16687896687674125 6.196392510862971E-4 84-85 1.2645699001761167E-5 0.0014921924822078176 0.0 0.16737847198731082 6.196392510862971E-4 86-87 1.2645699001761167E-5 0.0014921924822078176 0.0 0.1676756459138522 6.196392510862971E-4 88-89 1.2645699001761167E-5 0.001593358074221907 0.0 0.1677704886563654 6.196392510862971E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7580 0.0 43.63772 1 GTATCAA 13470 0.0 35.37356 1 TCAACGC 15670 0.0 29.60511 4 ATCAACG 15865 0.0 29.242521 3 CAACGCA 16105 0.0 28.753654 5 AACGCAG 16770 0.0 27.688528 6 TATCAAC 17255 0.0 27.347387 2 GTACATG 22030 0.0 23.85247 1 TACATGG 22180 0.0 23.219374 2 ACGCAGA 20040 0.0 23.128849 7 CGCAGAG 20145 0.0 22.966728 8 ACATGGG 22895 0.0 22.238632 3 CATGGGG 16480 0.0 20.553568 4 GCAGAGT 24525 0.0 18.779545 9 AGAGTAC 21950 0.0 17.367716 10-11 GAGTACT 13975 0.0 16.762762 12-13 ATGGGGG 10685 0.0 16.575417 5 CAGAGTA 24150 0.0 16.210327 10-11 GAGTACA 15575 0.0 16.075974 1 AGTACTT 15725 0.0 14.963835 12-13 >>END_MODULE