##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140005_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9645753 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.75641372944134 34.0 31.0 34.0 31.0 34.0 2 32.9343941318008 34.0 31.0 34.0 31.0 34.0 3 33.02891490171892 34.0 33.0 34.0 31.0 34.0 4 36.4103296030906 37.0 37.0 37.0 35.0 37.0 5 36.258296889833275 37.0 37.0 37.0 35.0 37.0 6 36.315363248468 37.0 37.0 37.0 35.0 37.0 7 36.31210160575333 37.0 37.0 37.0 35.0 37.0 8 36.30107208841031 37.0 37.0 37.0 35.0 37.0 9 38.19057185063727 39.0 39.0 39.0 37.0 39.0 10-11 38.09265932892953 39.0 38.0 39.0 37.0 39.0 12-13 38.12478533298541 39.0 38.0 39.0 37.0 39.0 14-15 39.55933590669386 41.0 39.0 41.0 37.0 41.0 16-17 39.54151194831549 41.0 39.0 41.0 37.0 41.0 18-19 39.58739955294315 41.0 39.5 41.0 37.0 41.0 20-21 39.60015127523796 41.0 39.5 41.0 37.0 41.0 22-23 39.53894771415722 41.0 39.0 41.0 37.0 41.0 24-25 39.493682328368344 41.0 39.0 41.0 37.0 41.0 26-27 39.45188341988098 41.0 39.0 41.0 37.0 41.0 28-29 39.35752805191832 40.5 39.0 41.0 36.0 41.0 30-31 39.2617718004191 40.0 39.0 41.0 36.0 41.0 32-33 39.15643714351806 40.0 39.0 41.0 35.5 41.0 34-35 39.08298532755944 40.0 39.0 41.0 35.0 41.0 36-37 39.08226904254896 40.0 39.0 41.0 35.0 41.0 38-39 39.07275439063349 40.0 39.0 41.0 35.0 41.0 40-41 39.023151080464594 40.0 39.0 41.0 35.0 41.0 42-43 38.97943061417782 40.0 38.5 41.0 35.0 41.0 44-45 38.93798623090683 40.0 38.0 41.0 35.0 41.0 46-47 38.85745464823841 40.0 38.0 41.0 35.0 41.0 48-49 38.81866914070291 40.0 38.0 41.0 35.0 41.0 50-51 38.71493022938647 40.0 38.0 41.0 35.0 41.0 52-53 38.53537797185854 40.0 38.0 41.0 34.5 41.0 54-55 38.38372972532322 40.0 37.5 41.0 34.0 41.0 56-57 38.20956698400621 40.0 37.0 41.0 34.0 41.0 58-59 38.00545350835178 39.5 36.5 41.0 34.0 41.0 60-61 37.85851051281577 39.0 36.0 41.0 34.0 41.0 62-63 37.66715448359082 39.0 36.0 41.0 33.5 41.0 64-65 37.39487037402829 39.0 35.0 40.5 33.0 41.0 66-67 37.10959136970596 38.0 35.0 40.0 33.0 41.0 68-69 36.83845828257516 37.5 35.0 40.0 33.0 41.0 70-71 36.53464787072863 37.0 35.0 39.5 33.0 41.0 72-73 36.18435418394324 36.5 35.0 39.0 32.0 41.0 74-75 35.80630352676586 36.0 35.0 39.0 32.0 40.5 76-77 33.903922110195055 34.5 32.0 36.5 29.0 39.0 78-79 34.9857875467825 35.0 34.0 37.0 31.0 39.0 80-81 34.92587577708984 35.0 34.0 37.0 32.0 39.0 82-83 34.671432525461874 35.0 34.0 36.0 31.0 38.5 84-85 34.446302391490946 35.0 34.0 36.0 31.0 37.0 86-87 34.260831739179565 35.0 34.0 35.5 31.0 37.0 88-89 34.123768976880584 35.0 34.0 35.0 31.0 36.5 90-91 33.998607005296364 35.0 34.0 35.0 31.0 36.0 92-93 33.92504877874843 35.0 34.0 35.0 31.0 36.0 94-95 33.85453360290133 35.0 34.0 35.0 31.0 36.0 96-97 33.82207893168465 35.0 34.0 35.0 31.0 35.5 98-99 33.85223596888184 35.0 34.0 35.0 31.0 35.0 100-101 32.58804329618319 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 13.0 20 35.0 21 139.0 22 465.0 23 1601.0 24 4257.0 25 9279.0 26 17134.0 27 28785.0 28 43375.0 29 61950.0 30 84034.0 31 112181.0 32 152013.0 33 214790.0 34 337073.0 35 558040.0 36 1119726.0 37 2398002.0 38 3100520.0 39 1372164.0 40 30175.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.963519799853884 19.60377795284619 13.104637864975393 24.328064382324534 2 15.153662748734313 21.035433902697296 40.4248655415959 23.386037806972492 3 18.674154801134314 25.889023300872633 29.93056517451394 25.506256723479115 4 12.729045151590581 17.266162064519396 38.33837303077801 31.666419753112017 5 13.29982496956432 37.92754965372836 35.43774870406669 13.334876672640627 6 30.766970707211765 37.345907571964574 18.48135650995832 13.405765210865342 7 27.04634879205387 32.29404692407114 23.012075884588793 17.647528399286195 8 25.158645722770316 36.12214595800452 21.078311945232418 17.64089637399274 9 26.133663601402436 16.219141821396885 20.836062585882033 36.811131991318646 10-11 24.768743312411676 26.295662083296058 28.65012341811095 20.28547118618132 12-13 25.369624923955943 23.88197609635109 28.839037899073205 21.909361080619767 14-15 22.429525617477314 25.206041755846805 26.265561404885617 26.098871221790265 16-17 22.215201172597073 28.40683387385624 26.880992759598733 22.496972193947954 18-19 22.30831537983608 27.72848319877152 28.384657994041522 21.578543427350876 20-21 23.005872996166314 26.942866910633988 28.188168111955754 21.863091981243944 22-23 22.79496107228541 26.82506225458598 28.074565736871687 22.305410936256923 24-25 22.537590695371147 26.944191153498636 28.16599926627007 22.352218884860147 26-27 22.475407264497672 27.151995337189543 28.05307017807778 22.319527220235003 28-29 22.39175395580774 27.3039910735957 28.026489569839587 22.277765400756973 30-31 22.661665577337462 27.114321448234456 27.930406029461846 22.293606944966236 32-33 22.433818253936607 27.289336307436585 27.894034150065032 22.38281128856177 34-35 22.53386205597542 27.304032217833285 27.927464694680136 22.234641031511156 36-37 22.56581398882614 27.211653509018046 27.93645909716736 22.286073404988453 38-39 22.415272449325506 27.314022948214696 27.972022199100365 22.298682403359436 40-41 22.595257164589576 27.224237381729598 27.84745879444411 22.333046659236718 42-43 22.522341387765078 27.33867577362219 27.6645235372028 22.474459301409937 44-45 22.567230045143475 27.408416653118955 27.55699622846905 22.467357073268523 46-47 22.64552064778608 27.368367948326078 27.35132285309752 22.634788550790322 48-49 22.572991630442125 27.500139970760678 27.32162106838225 22.605247330414947 50-51 22.535871691177626 27.603901541160784 27.232368906252592 22.627857861408998 52-53 22.744826229384977 27.443219295925044 27.145489980734727 22.666464493955253 54-55 22.664064403164478 27.354075973118757 27.23542779773089 22.746431825985876 56-57 22.672089251631427 27.507305137207936 27.135242427666455 22.685363183494182 58-59 22.649303331272726 27.530087348559412 27.15679692066913 22.66381239949873 60-61 22.699061269037387 27.499055085645292 27.17802021237592 22.62386343294141 62-63 22.68604694499728 27.537842975021803 27.111107135669403 22.665002944311517 64-65 22.68319179780846 27.516223260992955 27.08910411447205 22.711480826726536 66-67 22.759192432671757 27.483612865842062 26.980080316176867 22.77711438530931 68-69 22.66779467704745 27.531658422399786 27.07552174126608 22.72502515928668 70-71 22.70066669290517 27.33192664188729 27.083480041283853 22.88392662392369 72-73 22.761635689872133 27.425631267819583 27.0060209946513 22.806712047656983 74-75 22.593541530668798 27.507792175127932 27.088911294003466 22.809755000199807 76-77 22.73725787269933 27.428125079717507 27.000803713939835 22.833813333643324 78-79 22.69168166099193 27.459899970437284 26.956046196269373 22.892372172301414 80-81 22.711492774284842 27.505433585276574 26.98654207904013 22.796531561398453 82-83 22.745023357271197 27.430740401859733 27.059183264975356 22.765052975893713 84-85 22.805065274452758 27.443381909433455 26.97033602740437 22.781216788709408 86-87 22.642218607039105 27.468694285355078 27.103301417393283 22.785785690212535 88-89 22.702509035966045 27.419543457436806 27.029722134597705 22.848225371999437 90-91 22.7480904270952 27.444900259702337 27.02743039265713 22.77957892054533 92-93 22.790584064473528 27.447339434009432 26.989247118989006 22.77282938252803 94-95 22.629341853763137 27.42230215507655 27.104541620540118 22.843814370620194 96-97 22.669894405563237 27.447441398658505 27.142441728309713 22.740222467468545 98-99 22.92858695884396 28.100905937706344 27.101396548877048 21.869110554572647 100-101 27.230019204904742 35.10959954268989 27.647513656260102 10.012867596145261 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1847.0 1 1656.5 2 2317.5 3 3401.0 4 4671.5 5 7663.5 6 10183.0 7 11791.5 8 12752.5 9 12328.5 10 11072.5 11 9848.5 12 10346.5 13 13298.0 14 20517.0 15 30077.5 16 37674.5 17 42355.5 18 43459.0 19 41432.5 20 38263.5 21 35639.0 22 35229.5 23 38985.0 24 47167.0 25 59603.0 26 75798.0 27 93511.5 28 113377.5 29 134824.5 30 154130.5 31 173247.0 32 193668.5 33 213379.0 34 232092.0 35 250708.0 36 271843.0 37 291456.0 38 308201.5 39 323286.0 40 337689.0 41 351788.5 42 363045.0 43 375591.0 44 388505.5 45 400922.5 46 411510.0 47 418774.5 48 420551.5 49 417179.5 50 413745.5 51 407185.5 52 395599.5 53 380573.5 54 362695.0 55 339890.5 56 314279.0 57 287230.5 58 258277.0 59 226912.5 60 193362.5 61 161079.0 62 130469.0 63 102755.0 64 79158.0 65 60817.5 66 46921.0 67 36781.5 68 28747.0 69 21208.5 70 15491.5 71 11362.5 72 8194.5 73 5828.5 74 4153.0 75 2901.0 76 1985.0 77 1288.5 78 841.0 79 593.0 80 419.0 81 287.5 82 196.5 83 141.5 84 100.0 85 68.5 86 51.5 87 40.5 88 29.0 89 18.5 90 14.5 91 12.5 92 12.5 93 10.0 94 4.5 95 1.5 96 1.0 97 0.5 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.969778823903121E-4 3 0.004654898378592112 4 2.0734513935822324E-5 5 2.0734513935822324E-5 6 0.0 7 0.0 8 4.8726107749182465E-4 9 0.0026436505268173463 10-11 8.915840992403599E-4 12-13 3.0065045206942374E-4 14-15 1.4514159755075627E-4 16-17 0.00160692483002623 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.537654221704971E-4 32-33 7.453445415083417E-4 34-35 5.75213536259605E-5 36-37 8.721949605836183E-4 38-39 6.614769128417382E-4 40-41 2.667396750940044E-5 42-43 1.0219711424394872E-4 44-45 9.990998327702356E-4 46-47 0.0 48-49 4.882999719948868E-4 50-51 3.924323128542157E-5 52-53 5.6599300104374765E-6 54-55 6.800094812750532E-4 56-57 9.064760380276513E-4 58-59 1.0505348097627367E-4 60-61 1.3570403163107574E-4 62-63 1.788948448945916E-5 64-65 6.025351909171917E-6 66-67 6.091757833376168E-6 68-69 2.465236619882022E-5 70-71 4.428507362237557E-4 72-73 0.0 74-75 1.9150879373270875E-5 76-77 0.0 78-79 2.8758694357890576E-4 80-81 0.0 82-83 6.7055966787447866E-6 84-85 1.3577274412397628E-5 86-87 3.0244817361514995E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 7.284576497304634E-6 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 225.0 20-21 602.0 22-23 1286.0 24-25 3771.0 26-27 5189.0 28-29 10671.0 30-31 24347.0 32-33 29232.0 34-35 39896.0 36-37 62628.0 38-39 76695.0 40-41 75622.0 42-43 83691.0 44-45 98284.0 46-47 98823.0 48-49 94223.0 50-51 85981.0 52-53 82833.0 54-55 88869.0 56-57 92496.0 58-59 92908.0 60-61 90789.0 62-63 86697.0 64-65 88827.0 66-67 94311.0 68-69 96398.0 70-71 95703.0 72-73 89995.0 74-75 90497.0 76-77 90492.0 78-79 96145.0 80-81 97721.0 82-83 92023.0 84-85 90927.0 86-87 93645.0 88-89 100348.0 90-91 107092.0 92-93 104823.0 94-95 114435.0 96-97 174771.0 98-99 793633.0 100-101 5808209.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.74607862430618 #Duplication Level Percentage of deduplicated Percentage of total 1 88.93590179170634 74.48033023971811 2 7.562060322260611 12.665857966195665 3 1.9401830454129816 4.87448165600104 4 0.7151223692524464 2.3955477664566196 5 0.32631109288449894 1.366363722034426 6 0.17960650942488435 0.9024804515840132 7 0.09819378585511325 0.5756341157448419 8 0.06461994551618637 0.432933363031754 9 0.03844506115436484 0.2897660802734728 >10 0.13593953810150358 1.7441541239072367 >50 0.0028727381046061338 0.15104425087026072 >100 7.224911212413232E-4 0.10118717247169662 >500 0.0 0.0 >1k 2.130920521298682E-5 0.020219091710883094 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.110177090373349E-5 0.0 0.0 0.0 3 0.0 3.110177090373349E-5 0.0 2.0734513935822324E-5 0.0 4 0.0 1.1403982664702279E-4 0.0 6.220354180746697E-5 1.0367256967911162E-5 5 0.0 1.1403982664702279E-4 0.0 6.220354180746697E-5 1.0367256967911162E-5 6 0.0 1.1403982664702279E-4 0.0 7.257079877537814E-5 2.0734513935822324E-5 7 0.0 1.1403982664702279E-4 0.0 8.29380557432893E-5 2.0734513935822324E-5 8 0.0 1.3477434058284512E-4 0.0 8.29380557432893E-5 2.0734513935822324E-5 9 0.0 3.421194799410684E-4 0.0 1.2440708361493395E-4 2.0734513935822324E-5 10-11 0.0 3.421194799410684E-4 0.0 2.3844691026195675E-4 2.0734513935822324E-5 12-13 0.0 3.421194799410684E-4 0.0 3.2656859448920164E-4 2.5918142419777907E-5 14-15 0.0 4.8726107749182465E-4 0.0 3.369358514571128E-4 4.665265635560023E-5 16-17 0.0 4.8726107749182465E-4 0.0 3.991393932645797E-4 8.29380557432893E-5 18-19 0.0 5.131792199116026E-4 0.0 4.6134293507204676E-4 8.29380557432893E-5 20-21 0.0 5.546482477832472E-4 0.0 5.390973623313805E-4 8.812168422724488E-5 22-23 0.0 5.857500186869807E-4 0.0 6.06484532622803E-4 1.1922345513097838E-4 24-25 0.0 6.686880744302701E-4 0.0 6.531371889784033E-4 1.3477434058284512E-4 26-27 0.0 7.153407307858703E-4 0.0 7.257079877537815E-4 1.3477434058284512E-4 28-29 0.0 7.153407307858703E-4 0.0 0.0010056239258873828 1.3477434058284512E-4 30-31 0.0 7.67177015625426E-4 0.0 0.0020216151087426764 1.399579690668007E-4 32-33 0.0 7.67177015625426E-4 0.0 0.003918823133870419 1.5550885451866744E-4 34-35 1.0367256967911162E-5 8.967677277243156E-4 0.0 0.006132232496519453 1.5550885451866744E-4 36-37 1.0367256967911162E-5 0.0010263584398232052 0.0 0.00976077243528836 1.5550885451866744E-4 38-39 1.0367256967911162E-5 0.0010678274676948498 0.0 0.015893004931807814 1.5550885451866744E-4 40-41 1.0367256967911162E-5 0.001150765523438139 0.0 0.022579885676110512 1.658761114865786E-4 42-43 1.0367256967911162E-5 0.0011715000373739614 0.0 0.028535874804175475 1.658761114865786E-4 44-45 1.0367256967911162E-5 0.0013373761488605401 0.0 0.03502059403760391 1.658761114865786E-4 46-47 1.0367256967911162E-5 0.0014825177464112963 0.0 0.04186298363642527 1.7105973997053416E-4 48-49 1.0367256967911162E-5 0.0014825177464112963 0.0 0.049203001569706376 1.9697788239031208E-4 50-51 1.0367256967911162E-5 0.0017002301427374307 0.0 0.056149063738206856 1.9697788239031208E-4 52-53 1.5550885451866744E-5 0.001731331913641164 0.0 0.06297590245157636 2.1252876784217883E-4 54-55 2.0734513935822324E-5 0.0017468827990930308 0.0 0.06984939382130145 2.3326328177800115E-4 56-57 2.0734513935822324E-5 0.0018039027124165422 0.0 0.07636003119714967 2.436305387459123E-4 58-59 2.0734513935822324E-5 0.00182982085483632 0.0 0.08255965086396054 2.5399779571382345E-4 60-61 2.0734513935822324E-5 0.0018661062542240092 0.0 0.0893813059488461 2.5918142419777905E-4 62-63 2.0734513935822324E-5 0.0018764735111919204 0.0 0.09591786146711408 2.6954868116569025E-4 64-65 2.0734513935822324E-5 0.0020941859075180548 0.0 0.10206046122060144 2.6954868116569025E-4 66-67 2.0734513935822324E-5 0.002104553164485966 0.0 0.10853999682554591 2.6954868116569025E-4 68-69 2.0734513935822324E-5 0.0021512058208415664 0.0 0.11457892400935417 2.6954868116569025E-4 70-71 2.0734513935822324E-5 0.0021823075917452995 0.0 0.12066968747800197 2.799159381336014E-4 72-73 2.0734513935822324E-5 0.0021926748487132107 0.0 0.1258584995904415 3.2138496600524603E-4 74-75 2.0734513935822324E-5 0.0022341438765848556 0.0 0.13028013468725563 3.2138496600524603E-4 76-77 2.0734513935822324E-5 0.0023326328177800115 0.0 0.1341937741926421 3.2138496600524603E-4 78-79 2.0734513935822324E-5 0.0023844691026195675 0.0 0.1380089247568334 3.2656859448920164E-4 80-81 2.0734513935822324E-5 0.002389652731103523 0.0 0.13960029870140778 3.4730310842502393E-4 82-83 2.0734513935822324E-5 0.0024000199880714343 0.0 0.1401342124352552 3.9395576478062417E-4 84-85 2.0734513935822324E-5 0.002436305387459123 0.0 0.14056963722790744 3.9395576478062417E-4 86-87 2.0734513935822324E-5 0.002436305387459123 0.0 0.14077179873878173 3.991393932645797E-4 88-89 2.0734513935822324E-5 0.002514059814718457 0.0 0.14087028767997686 4.043230217485353E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11390 0.0 42.84187 1 GTATCAA 19165 0.0 32.742428 1 TCAACGC 22150 0.0 27.55269 4 ATCAACG 22265 0.0 27.354597 3 CAACGCA 22600 0.0 26.98562 5 AACGCAG 23180 0.0 26.36493 6 TATCAAC 23510 0.0 26.11919 2 GTACATG 30970 0.0 23.803907 1 TACATGG 30655 0.0 23.431652 2 ACATGGG 31195 0.0 22.636482 3 ACGCAGA 27305 0.0 22.397343 7 CGCAGAG 27965 0.0 21.808622 8 CATGGGG 23675 0.0 20.345379 4 GAGTACT 16730 0.0 18.176222 12-13 GCAGAGT 33780 0.0 17.96741 9 AGAGTAC 28865 0.0 16.970734 10-11 CAGAGTA 32505 0.0 16.647804 10-11 ATGGGGG 15110 0.0 16.439796 5 TATACCG 845 0.0 16.414612 5 GAGTACA 21865 0.0 16.37759 1 >>END_MODULE