##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140004_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8345666 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.757835983371486 34.0 31.0 34.0 31.0 34.0 2 32.93120489125733 34.0 31.0 34.0 31.0 34.0 3 33.023978314013526 34.0 33.0 34.0 31.0 34.0 4 36.40678562981073 37.0 37.0 37.0 35.0 37.0 5 36.254024783642194 37.0 37.0 37.0 35.0 37.0 6 36.31415839071441 37.0 37.0 37.0 35.0 37.0 7 36.307448081435325 37.0 37.0 37.0 35.0 37.0 8 36.29626622968137 37.0 37.0 37.0 35.0 37.0 9 38.1806153037996 39.0 39.0 39.0 37.0 39.0 10-11 38.083348051551546 39.0 38.0 39.0 37.0 39.0 12-13 38.116465600228906 39.0 38.0 39.0 37.0 39.0 14-15 39.54924004866717 41.0 39.0 41.0 37.0 41.0 16-17 39.53099728649577 41.0 39.0 41.0 37.0 41.0 18-19 39.57536330833273 41.0 39.5 41.0 37.0 41.0 20-21 39.588596740740265 41.0 39.5 41.0 37.0 41.0 22-23 39.52621286270828 41.0 39.0 41.0 37.0 41.0 24-25 39.478885689846074 41.0 39.0 41.0 37.0 41.0 26-27 39.43413655056645 41.0 39.0 41.0 37.0 41.0 28-29 39.33848415423527 40.0 39.0 41.0 36.0 41.0 30-31 39.24379968574037 40.0 39.0 41.0 36.0 41.0 32-33 39.135978699607165 40.0 39.0 41.0 35.5 41.0 34-35 39.0586028442326 40.0 39.0 41.0 35.0 41.0 36-37 39.05424243109883 40.0 39.0 41.0 35.0 41.0 38-39 39.04424129496879 40.0 39.0 41.0 35.0 41.0 40-41 38.98899920469156 40.0 38.5 41.0 35.0 41.0 42-43 38.94011402047916 40.0 38.0 41.0 35.0 41.0 44-45 38.89352697840624 40.0 38.0 41.0 35.0 41.0 46-47 38.804475318218834 40.0 38.0 41.0 35.0 41.0 48-49 38.75972972136226 40.0 38.0 41.0 35.0 41.0 50-51 38.64729992434005 40.0 38.0 41.0 35.0 41.0 52-53 38.45823116175026 40.0 38.0 41.0 34.5 41.0 54-55 38.299492790042926 40.0 37.0 41.0 34.0 41.0 56-57 38.1118539599696 40.0 37.0 41.0 34.0 41.0 58-59 37.893227199528674 39.5 36.5 41.0 34.0 41.0 60-61 37.73300550399799 39.0 36.0 41.0 33.5 41.0 62-63 37.531959633183504 39.0 35.5 41.0 33.0 41.0 64-65 37.24790825378578 38.5 35.0 40.0 33.0 41.0 66-67 36.954379084292796 38.0 35.0 40.0 33.0 41.0 68-69 36.67969838099329 37.0 35.0 40.0 33.0 41.0 70-71 36.37122687758577 37.0 35.0 39.0 32.5 41.0 72-73 36.02229443496607 36.0 35.0 39.0 32.0 41.0 74-75 35.651307585679234 36.0 35.0 38.5 32.0 40.0 76-77 33.770803159877374 34.5 32.0 36.5 29.0 39.0 78-79 34.85878753201405 35.0 34.0 37.0 31.0 39.0 80-81 34.811441539269765 35.0 34.0 36.5 31.0 39.0 82-83 34.571327933040784 35.0 34.0 36.0 31.0 38.0 84-85 34.36021261298366 35.0 34.0 36.0 31.0 37.0 86-87 34.18659369918781 35.0 34.0 35.5 31.0 37.0 88-89 34.05848090994053 35.0 34.0 35.0 31.0 36.0 90-91 33.94156483794989 35.0 34.0 35.0 31.0 36.0 92-93 33.87209211006483 35.0 34.0 35.0 31.0 36.0 94-95 33.803930937965305 35.0 34.0 35.0 31.0 36.0 96-97 33.77511306914102 35.0 34.0 35.0 31.0 35.0 98-99 33.80850782008352 35.0 34.0 35.0 31.0 35.0 100-101 32.505867900375065 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 0.0 17 0.0 18 2.0 19 6.0 20 32.0 21 106.0 22 422.0 23 1552.0 24 3916.0 25 8649.0 26 16259.0 27 26531.0 28 40008.0 29 56607.0 30 76283.0 31 102214.0 32 136980.0 33 193491.0 34 305579.0 35 511552.0 36 1035303.0 37 2161578.0 38 2576624.0 39 1068547.0 40 23424.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.32254609757927 19.3059607226074 12.92077828180519 24.450714898008137 2 15.510644100355922 20.79844891761654 39.9138066558219 23.777100326205634 3 18.936700081470978 25.4738503802678 29.672571505192803 25.916878033068425 4 13.010181095237 16.95836304936312 37.73207260680516 32.29938324859472 5 13.649781053996296 37.606961218788435 35.06719955809393 13.676058169121333 6 31.44515967928743 36.748019870433346 18.13697073427094 13.669849716008283 7 27.60992352198135 31.937391215991628 22.638780416086625 17.813904845940396 8 25.56098527744284 35.854457465099394 20.68317438985126 17.901382867606504 9 26.266152533599186 16.092321075940873 20.57625481700186 37.065271573458084 10-11 25.177085988801874 26.036497708221436 28.2665191237171 20.51989717925959 12-13 25.71523625407009 23.587974262949945 28.535381494084213 22.16140798889575 14-15 22.798150126778577 24.841249690108132 25.896313925345325 26.464286257767967 16-17 22.58811697821379 28.027222638545023 26.545697265873542 22.83896311736764 18-19 22.658191688955682 27.370511832129395 28.047845432587405 21.923451046327518 20-21 23.332080335795354 26.544688934074557 27.91479201339289 22.2084387167372 22-23 23.17515696140974 26.423198471532434 27.804582310861665 22.597062256196157 24-25 22.90783471671915 26.629785434558308 27.813917986444864 22.648461862277678 26-27 22.849438561695383 26.691990389064006 27.852805219071342 22.60576583016927 28-29 22.776500382218853 26.775859941430504 27.826114447056828 22.62152522929382 30-31 22.98452827792842 26.69994839735991 27.661700035192627 22.653823289519043 32-33 22.779906998158047 26.877708104052356 27.662557879337434 22.67982701845216 34-35 22.95152071142259 26.81819139445195 27.659768282031244 22.570519612094216 36-37 22.948354934010016 26.74790742655454 27.619381435525902 22.684356203909548 38-39 22.805483345054625 26.86694445741842 27.69125593264633 22.636316264880623 40-41 22.95638009878648 26.7527614228735 27.596186859805787 22.69467161853423 42-43 22.84043352490026 26.87924483652685 27.424464427167994 22.8558572114049 44-45 22.90966767539195 26.92498062009585 27.335971090424948 22.829380614087253 46-47 23.059121655745948 26.94254922441267 27.05499851508786 22.943330604753516 48-49 22.9215094108036 27.085653652212354 27.005401934236666 22.987435002747375 50-51 22.884942025737505 27.174066896180708 26.99600803521381 22.944983042867978 52-53 23.1228762376372 27.04001745876008 26.8300766445256 23.007029659077112 54-55 23.002221224465956 26.939653823770517 26.931707842364244 23.12641710939928 56-57 23.031514721997276 27.06312502109044 26.924646767642475 22.98071348926981 58-59 22.997739838120797 27.110865213715897 26.862568171610523 23.028826776552787 60-61 23.06292466868164 27.057697399429525 26.888399974354567 22.990977957534273 62-63 23.057740220564675 27.126684301061903 26.860110146249838 22.955465332123584 64-65 23.027058263787488 27.11511554116049 26.81832328125442 23.039502913797598 66-67 23.088185147808176 27.059795596333817 26.732405974451613 23.11961328140639 68-69 22.99609234588739 27.07968438478867 26.834674583559387 23.08954868576455 70-71 23.0659115742089 26.920380893039763 26.848774378667102 23.16493315408424 72-73 23.106015243902654 26.953238703430195 26.750580574562505 23.19016547810464 74-75 22.917061041854062 27.11633679960589 26.823815537226594 23.142786621313462 76-77 23.135074757329168 26.992186102328557 26.728912397875593 23.14382674246668 78-79 23.04979663045304 26.975434326586235 26.720545280521296 23.25422376243943 80-81 23.05360861821829 27.04176555712683 26.76112910671547 23.143496717939406 82-83 23.126171194909485 26.95855498896944 26.80197538395563 23.113298432165447 84-85 23.110159256178083 26.957937331887983 26.74111913999983 23.190784271934106 86-87 23.060059675128194 26.97189312904155 26.87198359884905 23.096063596981207 88-89 23.052279948397736 26.87282566255771 26.8248224625532 23.250071926491362 90-91 23.116200143095273 26.879936173377654 26.815242306961355 23.188621376565717 92-93 23.178493930906146 26.856822525014547 26.84360203021657 23.121081513862737 94-95 23.04772976853455 26.79472502454009 26.96135127191451 23.196193935010854 96-97 23.100850817567867 26.815198373500444 26.91459353292703 23.16935727600466 98-99 23.35698425544451 27.410266459512556 26.936341674744373 22.29640761029857 100-101 24.218986258107993 29.86362731991227 23.903644823859914 22.013741598119825 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1094.0 1 1022.0 2 1703.0 3 2652.5 4 3640.5 5 5994.5 6 8059.0 7 9585.5 8 10759.5 9 10608.0 10 9388.5 11 8121.0 12 8552.0 13 11141.0 14 17184.0 15 25203.5 16 31661.5 17 35605.0 18 36218.5 19 34293.5 20 31440.5 21 28587.0 22 27715.5 23 30119.0 24 35888.5 25 45432.5 26 57282.0 27 69781.5 28 84567.0 29 102213.0 30 119127.5 31 135880.0 32 153602.5 33 170498.5 34 185168.0 35 198768.0 36 215562.5 37 232249.5 38 247118.5 39 259862.5 40 270341.5 41 281312.5 42 291067.0 43 301668.0 44 313625.5 45 327060.0 46 338329.5 47 345928.5 48 353197.5 49 354505.0 50 353381.5 51 353058.5 52 347292.0 53 339539.5 54 330823.0 55 315974.5 56 298204.5 57 276260.5 58 250740.5 59 221802.0 60 189076.5 61 157633.0 62 127789.0 63 101010.5 64 77781.5 65 59256.5 66 45632.5 67 35366.5 68 26912.0 69 19633.5 70 14246.5 71 10552.5 72 7690.0 73 5411.0 74 3882.5 75 2756.0 76 1902.5 77 1206.0 78 756.0 79 503.5 80 334.0 81 238.0 82 177.5 83 120.0 84 76.5 85 55.5 86 46.5 87 37.5 88 26.0 89 16.5 90 9.5 91 5.5 92 3.0 93 3.0 94 2.5 95 1.5 96 1.0 97 1.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.1982267203120757E-4 3 0.004349562994732835 4 2.3964534406241515E-5 5 1.1982267203120757E-5 6 0.0 7 0.0 8 4.4334388651546804E-4 9 0.002707992387905291 10-11 8.806966394293757E-4 12-13 3.8343255049986424E-4 14-15 1.5576947364056984E-4 16-17 0.0013420139267495248 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.448119791234008E-4 32-33 7.103370657733596E-4 34-35 7.24393548285448E-5 36-37 8.182275397449481E-4 38-39 6.402259839191085E-4 40-41 3.6832668022804576E-5 42-43 1.1745478933339894E-4 44-45 9.972674249264873E-4 46-47 0.0 48-49 4.2565248714465957E-4 50-51 1.2821056893568175E-5 52-53 3.878573750174859E-5 54-55 8.147986733513184E-4 56-57 0.001019566333051407 58-59 1.1289838852824864E-4 60-61 1.5424793101549662E-4 62-63 2.7081917315792015E-5 64-65 0.0 66-67 0.0 68-69 2.790782046899092E-5 70-71 4.3739748496446145E-4 72-73 0.0 74-75 7.2086853124118064E-6 76-77 0.0 78-79 2.7268668462075105E-4 80-81 0.0 82-83 7.550006904481315E-6 84-85 3.055713136984411E-5 86-87 3.015135749529117E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 3.2739206763396294E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 204.0 20-21 643.0 22-23 1130.0 24-25 2971.0 26-27 4182.0 28-29 8300.0 30-31 17384.0 32-33 21525.0 34-35 29210.0 36-37 45881.0 38-39 55687.0 40-41 55598.0 42-43 62752.0 44-45 75864.0 46-47 75896.0 48-49 71805.0 50-51 66346.0 52-53 62773.0 54-55 68465.0 56-57 71913.0 58-59 73420.0 60-61 71682.0 62-63 68197.0 64-65 71378.0 66-67 76354.0 68-69 78873.0 70-71 78662.0 72-73 74129.0 74-75 74826.0 76-77 75169.0 78-79 80674.0 80-81 81608.0 82-83 77789.0 84-85 77269.0 86-87 80997.0 88-89 86133.0 90-91 94943.0 92-93 91679.0 94-95 99682.0 96-97 152753.0 98-99 710909.0 100-101 5170011.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.67802622692506 #Duplication Level Percentage of deduplicated Percentage of total 1 88.55687203739792 73.21707388882433 2 7.656685097601207 12.660792226215575 3 2.0297003636395945 5.034348596933811 4 0.7600267398863688 2.513500429339582 5 0.37966383591567815 1.5694928291625703 6 0.20082204417826524 0.9962142141309188 7 0.11595767067082313 0.6711005935854817 8 0.07753734271996852 0.5128507563974107 9 0.05167551632838692 0.38451867248594407 >10 0.16715623232224774 2.1693331930403046 >50 0.00308362041273442 0.169336626945036 >100 7.929552722822942E-4 0.0890605588432927 >500 2.654365455358325E-5 0.012377414095795312 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1982267203120757E-5 2 0.0 1.1982267203120757E-5 0.0 0.0 1.1982267203120757E-5 3 0.0 1.1982267203120757E-5 0.0 0.0 1.1982267203120757E-5 4 0.0 4.792906881248303E-5 0.0 0.0 1.1982267203120757E-5 5 0.0 5.9911336015603785E-5 0.0 0.0 1.1982267203120757E-5 6 0.0 5.9911336015603785E-5 0.0 0.0 2.3964534406241515E-5 7 0.0 5.9911336015603785E-5 0.0 4.792906881248303E-5 2.3964534406241515E-5 8 0.0 5.9911336015603785E-5 0.0 4.792906881248303E-5 4.792906881248303E-5 9 0.0 1.9171627524993212E-4 0.0 4.792906881248303E-5 7.189360321872455E-5 10-11 0.0 1.9171627524993212E-4 0.0 5.392020241404341E-5 7.189360321872455E-5 12-13 0.0 1.9171627524993212E-4 0.0 9.585813762496606E-5 7.189360321872455E-5 14-15 0.0 2.6960101207021707E-4 0.0 1.2581380563276795E-4 1.1982267203120757E-4 16-17 0.0 2.7559214567177744E-4 0.0 1.7374287444525097E-4 1.5576947364056984E-4 18-19 0.0 2.9356554647645857E-4 0.0 2.4563647766397557E-4 1.5576947364056984E-4 20-21 0.0 3.295123480858208E-4 0.0 3.8343255049986424E-4 1.5576947364056984E-4 22-23 0.0 3.8343255049986424E-4 0.0 5.991133601560379E-4 2.2167194325773402E-4 24-25 5.991133601560379E-6 4.1937935210922654E-4 0.0 7.668651009997285E-4 2.9955668007801894E-4 26-27 2.3964534406241515E-5 4.4334388651546804E-4 0.0 8.926789066324964E-4 2.9955668007801894E-4 28-29 2.3964534406241515E-5 4.4334388651546804E-4 0.0 0.0020190120237258474 2.9955668007801894E-4 30-31 2.3964534406241515E-5 5.272197569373133E-4 0.0 0.0040440151810532555 3.115389472811397E-4 32-33 2.3964534406241515E-5 5.272197569373133E-4 0.0 0.007345129795513024 3.47485748890502E-4 34-35 2.3964534406241515E-5 6.290690281638398E-4 0.0 0.012275832749597215 3.714502832967435E-4 36-37 2.3964534406241515E-5 7.309182993903662E-4 0.0 0.018452691492805966 3.714502832967435E-4 38-39 2.3964534406241515E-5 7.608739673981681E-4 0.0 0.02751128549836526 4.1338821850766616E-4 40-41 2.3964534406241515E-5 8.028119026090907E-4 0.0 0.03603067747978412 4.313616193123473E-4 42-43 2.3964534406241515E-5 8.207853034137718E-4 0.0 0.04398091176905474 4.493350201170284E-4 44-45 2.3964534406241515E-5 8.866877730309361E-4 0.0 0.052434401280856434 4.792906881248303E-4 46-47 2.3964534406241515E-5 9.346168418434191E-4 0.0 0.06210409091377489 5.092463561326322E-4 48-49 2.9955668007801893E-5 9.346168418434191E-4 0.0 0.07034189961592041 5.751488257497964E-4 50-51 3.5946801609362274E-5 0.0010724129146793078 0.0 0.0785078147148472 5.751488257497964E-4 52-53 3.5946801609362274E-5 0.001090386315483989 0.0 0.08658985394335215 6.470424289685209E-4 54-55 3.5946801609362274E-5 0.0010963774490855495 0.0 0.09459400843503682 7.249271657888059E-4 56-57 4.193793521092265E-5 0.0011023685826871098 0.0 0.10228063284583878 7.369094329919266E-4 58-59 4.792906881248303E-5 0.00110835971628867 0.0 0.10932620596127379 7.488917001950474E-4 60-61 4.792906881248303E-5 0.001138315384296472 0.0 0.11671327369199774 7.668651009997285E-4 62-63 5.392020241404341E-5 0.0011502976514995928 0.0 0.12435796016758878 7.788473682028492E-4 64-65 5.9911336015603785E-5 0.001407916396366689 0.0 0.13182291263513302 7.788473682028492E-4 66-67 5.9911336015603785E-5 0.0014258897971713702 0.0 0.1395514749811459 7.788473682028492E-4 68-69 5.9911336015603785E-5 0.001467827732382293 0.0 0.1467468264366199 7.788473682028492E-4 70-71 5.9911336015603785E-5 0.0015097656675932155 0.0 0.15340297586795348 8.028119026090907E-4 72-73 5.9911336015603785E-5 0.0015097656675932155 0.0 0.15805209554276434 9.106523074371776E-4 74-75 5.9911336015603785E-5 0.001515756801194776 0.0 0.16230580039987222 9.106523074371776E-4 76-77 5.9911336015603785E-5 0.0015457124692025777 0.0 0.1656368706823398 9.226345746402983E-4 78-79 5.9911336015603785E-5 0.0015696770036088192 0.0 0.16906379910243233 9.346168418434191E-4 80-81 5.9911336015603785E-5 0.0015696770036088192 0.0 0.17053761796841618 9.465991090465398E-4 82-83 5.9911336015603785E-5 0.0015696770036088192 0.0 0.1711247490613691 0.001030474979468385 84-85 5.9911336015603785E-5 0.00158165927081194 0.0 0.17150818161186895 0.001030474979468385 86-87 5.9911336015603785E-5 0.0015936415380150607 0.0 0.17175381808953294 0.001048448380273066 88-89 5.9911336015603785E-5 0.0016535528740306644 0.0 0.1718976052959704 0.0010544395138746266 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11225 0.0 37.89134 1 GTATCAA 18355 0.0 31.514526 1 TCAACGC 20640 0.0 27.262524 4 CAACGCA 20760 0.0 27.06396 5 ATCAACG 20845 0.0 26.955378 3 AACGCAG 21480 0.0 26.236147 6 TATCAAC 22640 0.0 25.249437 2 GTACATG 25625 0.0 24.499023 1 TACATGG 26325 0.0 23.298382 2 ACATGGG 26465 0.0 22.629515 3 ACGCAGA 25110 0.0 22.30784 7 CGCAGAG 25530 0.0 21.94085 8 CATGGGG 20920 0.0 19.985163 4 GAGTACT 15515 0.0 18.229687 12-13 GCAGAGT 30660 0.0 18.21413 9 AGAGTAC 25580 0.0 17.78221 10-11 GAGTACA 18435 0.0 17.465418 1 CAGAGTA 28905 0.0 16.626886 10-11 ATGGGGG 13310 0.0 16.48874 5 AGTACAT 19270 0.0 15.914113 2 >>END_MODULE