##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140003_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9066307 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.76277970732736 34.0 31.0 34.0 31.0 34.0 2 32.936758483911916 34.0 31.0 34.0 31.0 34.0 3 33.03173695750651 34.0 33.0 34.0 31.0 34.0 4 36.41566847449573 37.0 37.0 37.0 35.0 37.0 5 36.2648009823625 37.0 37.0 37.0 35.0 37.0 6 36.321147298453496 37.0 37.0 37.0 35.0 37.0 7 36.32011556634912 37.0 37.0 37.0 35.0 37.0 8 36.306943940901185 37.0 37.0 37.0 35.0 37.0 9 38.202500863912945 39.0 39.0 39.0 37.0 39.0 10-11 38.10437535371348 39.0 38.0 39.0 37.0 39.0 12-13 38.13984977565838 39.0 38.5 39.0 37.0 39.0 14-15 39.57928669302727 41.0 39.0 41.0 37.0 41.0 16-17 39.56562644525494 41.0 39.0 41.0 37.0 41.0 18-19 39.614617396035676 41.0 39.5 41.0 37.0 41.0 20-21 39.62964467526298 41.0 40.0 41.0 37.0 41.0 22-23 39.567238788095565 41.0 39.0 41.0 37.0 41.0 24-25 39.52223625333216 41.0 39.0 41.0 37.0 41.0 26-27 39.484763483388576 41.0 39.0 41.0 37.0 41.0 28-29 39.39091468248225 40.5 39.0 41.0 36.5 41.0 30-31 39.2979436511008 40.0 39.0 41.0 36.0 41.0 32-33 39.190940848378375 40.0 39.0 41.0 36.0 41.0 34-35 39.11508992917568 40.0 39.0 41.0 35.0 41.0 36-37 39.11777864313392 40.0 39.0 41.0 35.0 41.0 38-39 39.11096989185046 40.0 39.0 41.0 35.0 41.0 40-41 39.061096681104345 40.0 39.0 41.0 35.0 41.0 42-43 39.020847421467266 40.0 39.0 41.0 35.0 41.0 44-45 38.98201429902954 40.0 38.5 41.0 35.0 41.0 46-47 38.9052369718615 40.0 38.0 41.0 35.0 41.0 48-49 38.869108500515054 40.0 38.0 41.0 35.0 41.0 50-51 38.76780233434425 40.0 38.0 41.0 35.0 41.0 52-53 38.59029593055844 40.0 38.0 41.0 35.0 41.0 54-55 38.44781060824681 40.0 38.0 41.0 34.0 41.0 56-57 38.27707531512118 40.0 37.0 41.0 34.0 41.0 58-59 38.07717633050518 40.0 37.0 41.0 34.0 41.0 60-61 37.93601062750626 39.0 36.0 41.0 34.0 41.0 62-63 37.754968771897836 39.0 36.0 41.0 34.0 41.0 64-65 37.49684406617794 39.0 35.5 41.0 33.0 41.0 66-67 37.21672266848391 38.5 35.0 40.0 33.0 41.0 68-69 36.95872674139943 37.5 35.0 40.0 33.0 41.0 70-71 36.661901403154985 37.0 35.0 40.0 33.0 41.0 72-73 36.31736688549489 36.5 35.0 39.0 32.5 41.0 74-75 35.945395217487885 36.0 35.0 39.0 32.0 40.5 76-77 34.039058564453086 34.5 32.5 36.5 29.0 39.0 78-79 35.10282792333149 35.0 34.0 37.0 31.5 39.0 80-81 35.03591139235236 35.0 34.0 37.0 32.0 39.0 82-83 34.77054858407039 35.0 34.0 36.5 32.0 39.0 84-85 34.5384917570654 35.0 34.0 36.0 31.0 37.0 86-87 34.34113116547189 35.0 34.0 36.0 31.0 37.0 88-89 34.19415167155515 35.0 34.0 35.0 31.0 37.0 90-91 34.05958821608637 35.0 34.0 35.0 31.0 36.0 92-93 33.97973970057395 35.0 34.0 35.0 31.0 36.0 94-95 33.904283874583435 35.0 34.0 35.0 31.0 36.0 96-97 33.86791566661239 35.0 34.0 35.0 31.0 36.0 98-99 33.89489567287494 35.0 34.0 35.0 31.0 35.0 100-101 32.6537653408585 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 2.0 20 30.0 21 87.0 22 451.0 23 1517.0 24 3793.0 25 8619.0 26 15985.0 27 26455.0 28 40223.0 29 56767.0 30 77008.0 31 102501.0 32 137899.0 33 193294.0 34 303125.0 35 502152.0 36 1011790.0 37 2199631.0 38 2964236.0 39 1389307.0 40 31432.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.74096387867739 19.831922744288274 13.068000013677015 24.359113363357316 2 14.998816493905661 21.246956580437274 40.55467279751501 23.199554128142054 3 18.446199494810223 26.089555366814103 30.266029848112158 25.198215290263516 4 12.515778211618853 17.50395420403031 38.837673582387524 31.142594001963314 5 13.092028801596417 38.028301061634494 35.7045424138152 13.175127722953889 6 30.292543590240218 37.84144966633051 18.6482985850799 13.21770815834937 7 26.65445809412807 32.53237508943829 23.34315394349651 17.47001287293713 8 24.875436467331557 36.3075743385611 21.367836804096775 17.449152390010564 9 25.93569660358262 16.241224268157268 21.146512159150184 36.67656696910993 10-11 24.43405619559272 26.489084158161937 29.036533058349413 20.040326587895933 12-13 25.09918766514158 24.104611448132466 29.182673564833443 21.613527321892505 14-15 22.21483466285504 25.471540573418483 26.580770111885858 25.732854651840615 16-17 21.884995267018052 28.62721684116527 27.25469619682675 22.233091694989923 18-19 21.952014199386806 27.980786443697525 28.749384948027902 21.317814408887763 20-21 22.684291711653888 27.202717449662618 28.54193533300599 21.571055505677503 22-23 22.43788363814426 27.094350087633956 28.458943475946015 22.00882279827577 24-25 22.205782451968563 27.209491330338203 28.53541948501151 22.04930673268172 26-27 22.126536673121148 27.39789273129104 28.4474653278465 22.028105267741314 28-29 22.055297491611842 27.52066826292824 28.441735375881056 21.98229886957887 30-31 22.32432755860854 27.373979485808054 28.319604080806993 21.98208887477641 32-33 22.081524667028187 27.544782542605546 28.311066471071445 22.06262631929482 34-35 22.247147021309786 27.52598552579589 28.30625896573979 21.920608487154542 36-37 22.23394516478621 27.505224484386996 28.257708900881113 22.003121449945677 38-39 22.092748032950542 27.605430723702757 28.33096266684006 21.970858576506643 40-41 22.280859760413012 27.448046068866766 28.244449833000413 22.026644337719805 42-43 22.188241878184026 27.566140627560507 28.062464861501983 22.18315263275348 44-45 22.239609864049942 27.66456756429439 27.903802634612024 22.192019937043643 46-47 22.317476873982006 27.674005727746433 27.667702153923017 22.340815244348544 48-49 22.27604440786569 27.727735135268787 27.687596622666188 22.30862383419933 50-51 22.24216087625796 27.82222963240625 27.638244858273097 22.297364633062696 52-53 22.429018861993857 27.742621015489988 27.453463104942433 22.374897017573726 54-55 22.358633517936727 27.649452429111125 27.509233449192553 22.48268060375959 56-57 22.36661668851313 27.730727906952712 27.500620115918423 22.402035288615735 58-59 22.348591858548577 27.790969103762425 27.48486267549655 22.375576362192444 60-61 22.372452721143844 27.72809968987342 27.553570013150264 22.34587757583247 62-63 22.333595374206034 27.829459637664637 27.473260636699408 22.363684351429917 64-65 22.320141129654075 27.79235629273137 27.421415573660386 22.46608700395417 66-67 22.400060828406865 27.832984783554938 27.28352513505163 22.48342925298657 68-69 22.334550038097277 27.824737397416737 27.380343056756534 22.46036950772945 70-71 22.328584778402234 27.65612419717172 27.408102065113233 22.607188959312808 72-73 22.383201959504248 27.685637815626947 27.364971023179784 22.56618920168902 74-75 22.207704309482505 27.80613875302179 27.379138714242302 22.6070182232534 76-77 22.39782603954074 27.6900104359018 27.269449678653128 22.642713845904332 78-79 22.396155280080084 27.731251701955433 27.222281367168428 22.650311650796056 80-81 22.37147629199033 27.782407342150144 27.234573610108587 22.61154275575094 82-83 22.42374446172256 27.67737586222626 27.318829283570462 22.580050392480718 84-85 22.504215008878305 27.731430449277383 27.24307154430255 22.521282997541764 86-87 22.39244183334577 27.740096334148074 27.298919520579894 22.56854231192626 88-89 22.381798430949157 27.718112593414446 27.285972660643438 22.614116314992962 90-91 22.42745608742655 27.70630931895623 27.323953168421124 22.542281425196105 92-93 22.429577478197587 27.67330636933919 27.32691259728306 22.57020355518016 94-95 22.300397017164258 27.70569201328105 27.427739765825326 22.566171203729365 96-97 22.335230815503383 27.707536800440195 27.4371808533146 22.52005153074182 98-99 22.582851215939268 28.355528454798005 27.47130885373059 21.590311475532133 100-101 26.759509890744383 35.31109346687445 28.098617688678267 9.830778953702891 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1731.0 1 1526.5 2 2158.5 3 3238.0 4 4428.0 5 7177.0 6 9531.5 7 11105.5 8 12090.0 9 11788.0 10 10574.0 11 9255.0 12 9820.5 13 12921.0 14 20108.5 15 29556.5 16 37162.5 17 41909.5 18 43218.5 19 41600.5 20 38861.0 21 36737.5 22 37050.0 23 41462.0 24 49795.5 25 62140.0 26 78642.0 27 96797.0 28 117116.5 29 139759.5 30 161124.5 31 181990.5 32 202404.0 33 221214.0 34 238254.5 35 253689.5 36 271727.0 37 288316.5 38 301061.0 39 311997.5 40 323156.5 41 334421.5 42 342951.0 43 352652.5 44 364045.0 45 374066.0 46 380339.0 47 383872.5 48 383748.0 49 377986.5 50 371170.0 51 362967.5 52 350392.0 53 336911.5 54 321033.5 55 300987.0 56 279479.0 57 254743.0 58 227403.5 59 198919.5 60 168846.0 61 139502.0 62 112019.5 63 87358.0 64 66703.0 65 50901.5 66 39423.5 67 30830.5 68 23821.5 69 17512.5 70 12755.0 71 9650.0 72 7096.5 73 5084.5 74 3673.5 75 2572.0 76 1763.0 77 1146.0 78 772.0 79 547.5 80 377.0 81 258.0 82 190.0 83 134.0 84 93.0 85 70.5 86 58.0 87 43.5 88 31.0 89 25.0 90 18.5 91 12.0 92 9.0 93 6.0 94 2.5 95 1.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.757462327273939E-4 3 0.004489148668801972 4 7.720894516367028E-5 5 4.411939723638302E-5 6 0.0 7 0.0 8 5.514924654547878E-4 9 0.0028015817245103216 10-11 8.823879447276602E-4 12-13 3.6949995185470776E-4 14-15 1.5441789032734056E-4 16-17 0.0015552087525825013 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.133608336699677E-4 32-33 7.373017649174857E-4 34-35 1.1122451686433395E-5 36-37 8.93878019394248E-4 38-39 6.693469418128829E-4 40-41 1.7000582666636595E-5 42-43 9.138928448073437E-5 44-45 0.0010721452906738635 46-47 0.0 48-49 5.475009144148337E-4 50-51 1.7838349943116474E-5 52-53 3.600520563263037E-5 54-55 8.839669287386427E-4 56-57 0.0010088054655001371 58-59 4.323448016497784E-5 60-61 1.1234196294362904E-4 62-63 6.306639137766388E-6 64-65 7.646811126823891E-5 66-67 0.0 68-69 1.9560467174373804E-5 70-71 5.147577754491954E-4 72-73 0.0 74-75 1.351201623603871E-5 76-77 0.0 78-79 3.461005679648761E-4 80-81 0.0 82-83 2.842054390384307E-5 84-85 2.158682754513734E-5 86-87 3.571265886211452E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 2.3211038241346056E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 192.0 20-21 608.0 22-23 1246.0 24-25 3217.0 26-27 4806.0 28-29 9724.0 30-31 21077.0 32-33 26598.0 34-35 36103.0 36-37 56347.0 38-39 66464.0 40-41 68301.0 42-43 75568.0 44-45 90344.0 46-47 90870.0 48-49 85941.0 50-51 78838.0 52-53 72566.0 54-55 78874.0 56-57 82731.0 58-59 83037.0 60-61 84620.0 62-63 81041.0 64-65 85185.0 66-67 90585.0 68-69 91990.0 70-71 91181.0 72-73 86068.0 74-75 87896.0 76-77 87766.0 78-79 93041.0 80-81 94019.0 82-83 88941.0 84-85 87748.0 86-87 91649.0 88-89 97410.0 90-91 103839.0 92-93 101174.0 94-95 110157.0 96-97 167025.0 98-99 745965.0 100-101 5465555.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.72573644218343 #Duplication Level Percentage of deduplicated Percentage of total 1 89.38652620032568 75.73339260331117 2 7.350927958971592 12.45625569714609 3 1.811754203631791 4.605066274647752 4 0.6901847332674128 2.3390563922893395 5 0.3087977382090234 1.3081557890720035 6 0.16035495972834699 0.8151715233084519 7 0.08620636799514121 0.5112728610075947 8 0.0626895798226985 0.4249136654183338 9 0.029786965902561933 0.22713503602254898 >10 0.11061639139397744 1.39278089112938 >50 0.0016718525099596892 0.09086177006208057 >100 4.410012713611862E-4 0.06284223976763771 >500 2.1023491764076233E-5 0.014053911187927566 >1k 2.1023478668827626E-5 0.019041345629756682 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.308954792728726E-5 0.0 0.0 0.0 3 0.0 3.308954792728726E-5 0.0 0.0 0.0 4 0.0 3.308954792728726E-5 0.0 0.0 2.205969861819151E-5 5 0.0 3.308954792728726E-5 0.0 0.0 2.205969861819151E-5 6 4.411939723638302E-5 3.308954792728726E-5 0.0 0.0 2.205969861819151E-5 7 4.411939723638302E-5 3.308954792728726E-5 0.0 5.514924654547877E-5 2.205969861819151E-5 8 4.411939723638302E-5 4.411939723638302E-5 0.0 6.617909585457453E-5 2.205969861819151E-5 9 4.411939723638302E-5 1.3235819170914905E-4 0.0 6.617909585457453E-5 4.411939723638302E-5 10-11 4.411939723638302E-5 1.3235819170914905E-4 0.0 9.375371912731391E-5 4.411939723638302E-5 12-13 4.411939723638302E-5 1.3235819170914905E-4 0.0 1.1581341774550542E-4 4.411939723638302E-5 14-15 4.411939723638302E-5 1.7096266429098418E-4 0.0 1.2684326705460116E-4 9.375371912731391E-5 16-17 7.720894516367028E-5 1.930223629091757E-4 0.0 1.3787311636369694E-4 9.926864378186179E-5 18-19 7.720894516367028E-5 2.3162683549101084E-4 0.0 1.7647758894553207E-4 9.926864378186179E-5 20-21 7.720894516367028E-5 2.9780593134558534E-4 0.0 2.371417601455587E-4 9.926864378186179E-5 22-23 7.720894516367028E-5 3.198656299637769E-4 0.0 3.2538055461832474E-4 1.1029849309095754E-4 24-25 7.720894516367028E-5 3.5847010254561203E-4 0.0 3.860447258183514E-4 1.213283424000533E-4 26-27 7.720894516367028E-5 3.6398502720015987E-4 0.0 4.797984449456653E-4 1.213283424000533E-4 28-29 7.720894516367028E-5 3.805298011638035E-4 0.0 9.651118145458785E-4 1.213283424000533E-4 30-31 7.720894516367028E-5 4.1913427374563867E-4 0.0 0.0029890891627649494 1.2684326705460116E-4 32-33 7.720894516367028E-5 4.1913427374563867E-4 0.0 0.006684088681312027 1.3235819170914905E-4 34-35 7.720894516367028E-5 5.073730682184046E-4 0.0 0.01114566272684126 1.3235819170914905E-4 36-37 7.720894516367028E-5 6.011267873457186E-4 0.0 0.017989684223135176 1.433880410182448E-4 38-39 7.720894516367028E-5 6.452461845821016E-4 0.0 0.031104175051650026 1.7096266429098418E-4 40-41 7.720894516367028E-5 7.003954311275804E-4 0.0 0.060382910042644705 1.7647758894553207E-4 42-43 8.272386981821816E-5 7.389999037094155E-4 0.0 0.07257640845385006 1.7647758894553207E-4 44-45 9.926864378186179E-5 7.886342256003464E-4 0.0 0.08846490638360249 1.7647758894553207E-4 46-47 1.1029849309095754E-4 8.327536228367294E-4 0.0 0.10587552351801015 1.7647758894553207E-4 48-49 1.1029849309095754E-4 8.382685474912773E-4 0.0 0.12202873783118087 1.7647758894553207E-4 50-51 1.1029849309095754E-4 9.485670405822348E-4 0.0 0.13897058636995197 1.7647758894553207E-4 52-53 1.1029849309095754E-4 9.595968898913306E-4 0.0 0.16206709082319848 1.9853728756372358E-4 54-55 1.1029849309095754E-4 9.761416638549743E-4 0.0 0.20652841338816347 2.3162683549101084E-4 56-57 1.1029849309095754E-4 9.816565885095222E-4 0.0 0.2534769669723295 2.426566848001066E-4 58-59 1.1029849309095754E-4 0.0010368058350550009 0.0 0.3032712216782423 2.4817160945465443E-4 60-61 1.1581341774550542E-4 0.0010368058350550009 0.0 0.33810348579636673 2.647163834182981E-4 62-63 1.213283424000533E-4 0.0010423207597095488 0.0 0.3538706553837191 2.647163834182981E-4 64-65 1.213283424000533E-4 0.0011140147802186711 0.0 0.36884367582081656 2.70231308072846E-4 66-67 1.213283424000533E-4 0.0011526192528005063 0.0 0.37682377179594734 2.7574623272739383E-4 68-69 1.213283424000533E-4 0.00116916402676415 0.0 0.38421377083304153 2.7574623272739383E-4 70-71 1.3235819170914905E-4 0.0012022535746914371 0.0 0.3912122102196628 2.9780593134558534E-4 72-73 1.5441789032734056E-4 0.0012243132733096287 0.0 0.3969587617097016 3.5295517789106414E-4 74-75 1.5441789032734056E-4 0.001257402821236916 0.0 0.40161335811814003 3.5295517789106414E-4 76-77 1.5441789032734056E-4 0.00135115654036423 0.0 0.40571094713646916 3.5847010254561203E-4 78-79 1.5441789032734056E-4 0.001389761012946065 0.0 0.40961551379188904 3.6398502720015987E-4 80-81 1.5441789032734056E-4 0.0014007908622551608 0.0 0.4111541777705079 3.805298011638035E-4 82-83 1.5993281498188845E-4 0.0014118207115642566 0.0 0.41173875978388996 4.081044244365429E-4 84-85 1.6544773963643632E-4 0.0014283654855279002 0.0 0.4122406179274538 4.081044244365429E-4 86-87 1.6544773963643632E-4 0.001444910259491544 0.0 0.4125715134067267 4.081044244365429E-4 88-89 1.6544773963643632E-4 0.0015110893553461184 0.0 0.4127149014477449 4.411939723638302E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10960 0.0 41.24939 1 GTATCAA 18685 0.0 32.711258 1 ATCAACG 20815 0.0 28.556412 3 TCAACGC 21035 0.0 28.277292 4 CAACGCA 21440 0.0 27.763075 5 AACGCAG 21985 0.0 27.266466 6 TATCAAC 22430 0.0 26.780931 2 GTACATG 26405 0.0 23.60982 1 TACATGG 26410 0.0 23.223204 2 ACGCAGA 25790 0.0 23.17834 7 CGCAGAG 26310 0.0 22.736237 8 ACATGGG 27150 0.0 22.079311 3 CATGGGG 19780 0.0 20.303001 4 GCAGAGT 31470 0.0 18.9277 9 GAGTACT 16845 0.0 18.379522 12-13 AGAGTAC 27205 0.0 17.213829 10-11 CAGAGTA 30575 0.0 16.892902 10-11 ATGGGGG 12705 0.0 16.301718 5 GTACTTT 19465 0.0 15.981627 14-15 GAGTACA 18815 0.0 15.705679 1 >>END_MODULE