##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2140002_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8215855 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.75093085260146 34.0 31.0 34.0 31.0 34.0 2 32.929045242400214 34.0 31.0 34.0 31.0 34.0 3 33.023743724785795 34.0 33.0 34.0 31.0 34.0 4 36.40715835418225 37.0 37.0 37.0 35.0 37.0 5 36.25461062786527 37.0 37.0 37.0 35.0 37.0 6 36.3076626839203 37.0 37.0 37.0 35.0 37.0 7 36.30927188953554 37.0 37.0 37.0 35.0 37.0 8 36.29253352207409 37.0 37.0 37.0 35.0 37.0 9 38.18290743933529 39.0 39.0 39.0 37.0 39.0 10-11 38.08294717956926 39.0 38.0 39.0 37.0 39.0 12-13 38.11962893697613 39.0 38.0 39.0 37.0 39.0 14-15 39.560350931217755 41.0 39.0 41.0 37.0 41.0 16-17 39.542769011867904 41.0 39.0 41.0 37.0 41.0 18-19 39.58729675730645 41.0 39.5 41.0 37.0 41.0 20-21 39.60270540527941 41.0 39.5 41.0 37.0 41.0 22-23 39.54014631864358 41.0 39.0 41.0 37.0 41.0 24-25 39.498612956249424 41.0 39.0 41.0 37.0 41.0 26-27 39.459521891239504 41.0 39.0 41.0 37.0 41.0 28-29 39.36524307857223 40.5 39.0 41.0 36.5 41.0 30-31 39.272070446010076 40.0 39.0 41.0 36.0 41.0 32-33 39.17030510591017 40.0 39.0 41.0 36.0 41.0 34-35 39.097425189460964 40.0 39.0 41.0 35.0 41.0 36-37 39.10004624518261 40.0 39.0 41.0 35.0 41.0 38-39 39.0899038694842 40.0 39.0 41.0 35.0 41.0 40-41 39.04877280363808 40.0 39.0 41.0 35.0 41.0 42-43 39.0105962071014 40.0 39.0 41.0 35.0 41.0 44-45 38.97480310216332 40.0 38.5 41.0 35.0 41.0 46-47 38.90581989356406 40.0 38.0 41.0 35.0 41.0 48-49 38.87592461521613 40.0 38.0 41.0 35.0 41.0 50-51 38.7832597569478 40.0 38.0 41.0 35.0 41.0 52-53 38.61554773161668 40.0 38.0 41.0 35.0 41.0 54-55 38.481911127771525 40.0 38.0 41.0 34.5 41.0 56-57 38.32319123039871 40.0 37.5 41.0 34.0 41.0 58-59 38.135103952587436 40.0 37.0 41.0 34.0 41.0 60-61 38.00749660087866 39.5 37.0 41.0 34.0 41.0 62-63 37.84130785375221 39.0 36.0 41.0 34.0 41.0 64-65 37.59523128944254 39.0 36.0 41.0 33.0 41.0 66-67 37.330768272327774 39.0 35.0 40.0 33.0 41.0 68-69 37.076110551945874 38.0 35.0 40.0 33.0 41.0 70-71 36.78040162127 37.0 35.0 40.0 33.0 41.0 72-73 36.42996919545057 37.0 35.0 39.0 32.5 41.0 74-75 36.052685820156974 36.0 35.0 39.0 32.0 40.5 76-77 34.11910202393847 34.5 32.5 36.5 29.0 39.0 78-79 35.19015237753334 35.0 34.0 37.0 31.0 39.0 80-81 35.11389766765237 35.0 34.0 37.0 32.0 39.0 82-83 34.833549475875216 35.0 34.0 37.0 32.0 39.0 84-85 34.585909281551075 35.0 34.0 36.0 31.0 37.5 86-87 34.37263913705629 35.0 34.0 36.0 31.0 37.0 88-89 34.21008079795034 35.0 34.0 35.5 31.0 37.0 90-91 34.06658100846447 35.0 34.0 35.0 31.0 36.0 92-93 33.97978381098403 35.0 34.0 35.0 31.0 36.0 94-95 33.89566804149832 35.0 34.0 35.0 31.0 36.0 96-97 33.85641139522571 35.0 34.0 35.0 31.0 36.0 98-99 33.88098790943938 35.0 34.0 35.0 31.0 35.5 100-101 32.59484649702243 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 10.0 20 21.0 21 95.0 22 390.0 23 1418.0 24 3622.0 25 7916.0 26 14826.0 27 24741.0 28 37476.0 29 53140.0 30 72405.0 31 96120.0 32 129993.0 33 180988.0 34 278292.0 35 451756.0 36 897658.0 37 1953580.0 38 2730713.0 39 1251947.0 40 28748.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.540831112525716 19.86935017718789 13.030013309631194 24.559805400655197 2 14.873818729894781 21.24044787148336 40.87653129522134 23.00920210340052 3 18.528163336053392 25.870536974968307 30.21091584886332 25.390383840114982 4 12.268952751339727 17.580562551516262 39.227057644173726 30.923427052970283 5 12.942090485563762 38.040266548131584 36.02417619012611 12.993466776178538 6 30.163397479629328 38.14580466670846 18.746338634262656 12.944459219399562 7 26.618446893232655 32.415530702525786 23.33115664772565 17.634865756515907 8 24.574874333692883 36.81750761885078 21.35867132208331 17.248946725373017 9 25.67750360014601 16.360102969470784 21.135093691434108 36.827299738949094 10-11 24.218859830577237 26.7276176732602 29.2204975328572 19.833024963305366 12-13 24.843230946608845 24.186437702106087 29.317168599267696 21.653162752017373 14-15 21.870015725720073 25.691889082552727 26.72472930339442 25.713365888332785 16-17 21.730487945744073 28.825366562115185 27.39230444431651 22.05184104782424 18-19 21.69933622246254 28.219887035494175 28.859053622538372 21.221723119504908 20-21 22.430764386298353 27.500454473445878 28.660820883418474 21.407960256837292 22-23 22.09058143818079 27.46789798933792 28.545134904769455 21.89638566771184 24-25 21.89509301728279 27.524521094512057 28.69259810827226 21.88778777993289 26-27 21.902706481616526 27.7180840423028 28.562696792883074 21.816512683197598 28-29 21.800763393291835 27.84378381401974 28.58566774855281 21.769785044135617 30-31 22.143936499421514 27.671566136002347 28.459386600871273 21.72511076370487 32-33 21.862053043819937 27.817993067946055 28.446201665588788 21.87375222264522 34-35 21.9504140524575 27.858475140935596 28.508856053003523 21.68225475360338 36-37 21.970633087442675 27.79141715054405 28.45545869999159 21.782491062021688 38-39 21.80850704308846 27.88373861148318 28.514650366867638 21.793103978560723 40-41 22.04327751520315 27.745392266627704 28.42706738398358 21.784262834185565 42-43 21.94435332062607 27.84055390637529 28.313935499106623 21.901157273892014 44-45 22.01549231952225 28.008656692101592 28.121912921718028 21.85393806665813 46-47 22.01439802194273 27.898370586095417 27.93690991660779 22.15032147535407 48-49 22.00188215760453 27.95809219592525 27.99946520191413 22.04056044455609 50-51 21.929201475937727 28.0973871946791 27.916933474433247 22.056477854949925 52-53 22.099268582158505 28.001619595415246 27.840161558337968 22.058950264088285 54-55 22.100188048259085 27.933679015078017 27.844631908999105 22.121501027663797 56-57 22.138151931920074 28.058003860989324 27.749724464783938 22.054119742306664 58-59 22.043968892900224 28.160609783717916 27.813420442705134 21.98200088067673 60-61 22.110185015369442 28.17423067672773 27.75064437447629 21.964939933426535 62-63 22.050949240046343 28.213926902172215 27.70669484468462 22.028429013096815 64-65 22.047259259207383 28.129998854953413 27.759599044603945 22.063142841235265 66-67 22.14386020543369 28.14353744578204 27.60933483199511 22.103267516789167 68-69 22.09489942945245 28.153919713917396 27.675571674901704 22.07560918172845 70-71 22.083324043157766 27.907199977761493 27.74078035737399 22.26869562170675 72-73 22.096922214562678 27.966114101001278 27.770885976439995 22.166077707996052 74-75 21.991375118996785 28.11477134418353 27.69107325112087 22.202780285698815 76-77 22.045583635594195 28.063101626516723 27.662018528626987 22.2292962092621 78-79 22.075758384948358 28.099394054560356 27.584610489690032 22.240237070801257 80-81 22.042831085361676 28.09686279238465 27.62037318817695 22.239932934076723 82-83 22.140333729962958 28.017171164359812 27.733532159625835 22.108962946051395 84-85 22.26847047393063 27.993314597773498 27.618470113269538 22.119744815026333 86-87 22.070948206898237 28.038434284985343 27.6761741958229 22.21444331229352 88-89 22.147976648110763 28.039032387399143 27.661053945473324 22.151937019016767 90-91 22.156137952422096 28.079624382986278 27.669594432101434 22.094643232490192 92-93 22.17888196397512 28.022390294455008 27.696828936547753 22.10189880502212 94-95 21.998705644863826 28.125909569509556 27.739774259099047 22.135610526527575 96-97 22.06040058999551 28.121407790769094 27.78677392327653 22.031417695958865 98-99 22.286129072141375 28.669736499831828 27.845818212757962 21.19831621526884 100-101 22.996064573319423 31.329974606537338 24.925325698760247 20.748635121382993 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1360.0 1 1177.0 2 1647.5 3 2505.0 4 3521.5 5 5719.0 6 7563.0 7 8765.5 8 9552.5 9 9304.5 10 8284.5 11 7315.0 12 7788.0 13 10410.5 14 16485.0 15 24368.0 16 30448.0 17 34246.0 18 35639.0 19 34781.5 20 33092.5 21 31793.0 22 32564.0 23 36947.5 24 45141.0 25 57347.5 26 72865.5 27 90313.5 28 108772.0 29 128333.0 30 147189.5 31 164754.0 32 183481.5 33 202629.0 34 222075.0 35 240557.0 36 259663.5 37 275057.0 38 285244.0 39 296678.0 40 309930.0 41 321149.0 42 328015.0 43 334227.0 44 341446.5 45 347468.0 46 350913.0 47 353415.5 48 352252.5 49 347160.0 50 340160.5 51 328178.0 52 310824.5 53 292182.0 54 272977.0 55 251607.5 56 230716.5 57 209274.5 58 186229.5 59 163326.5 60 138884.0 61 113729.0 62 90503.0 63 70402.5 64 53514.0 65 40728.0 66 31202.0 67 23787.5 68 17975.5 69 13095.5 70 9560.5 71 7063.5 72 5147.0 73 3819.5 74 2863.0 75 2087.0 76 1451.0 77 935.0 78 620.0 79 418.5 80 281.0 81 188.0 82 134.0 83 94.5 84 71.0 85 50.0 86 33.0 87 23.5 88 18.5 89 14.5 90 11.0 91 10.0 92 8.0 93 4.5 94 2.0 95 0.5 96 0.0 97 0.5 98 1.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.9474540385632414E-4 3 0.004272227297098111 4 3.651476322306078E-5 5 3.651476322306078E-5 6 0.0 7 0.0 8 5.964077993099926E-4 9 0.002629062952060376 10-11 9.250406683175396E-4 12-13 3.347186628780571E-4 14-15 1.825738161153039E-4 16-17 0.0015336200553685527 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 7.565811270349744E-4 32-33 8.194862078330773E-4 34-35 6.74706717257403E-5 36-37 8.378225632269574E-4 38-39 6.634931438215023E-4 40-41 3.123367259764958E-5 42-43 9.441062061576748E-5 44-45 9.587132366806479E-4 46-47 0.0 48-49 4.728691334673129E-4 50-51 2.6160288929927117E-5 52-53 2.6394963946458873E-5 54-55 8.4558747156296E-4 56-57 0.0010018139556180281 58-59 1.2227832230881036E-4 60-61 1.1668463266819661E-4 62-63 6.9335669298255765E-6 64-65 7.003342555334811E-6 66-67 0.0 68-69 7.15779085092605E-6 70-71 4.198659122014048E-4 72-73 0.0 74-75 7.397996607722635E-6 76-77 0.0 78-79 1.891164682847522E-4 80-81 0.0 82-83 0.0 84-85 1.5680914711661693E-5 86-87 2.538606654005366E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 1.676625542954224E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 211.0 20-21 514.0 22-23 1128.0 24-25 2657.0 26-27 3890.0 28-29 8591.0 30-31 17881.0 32-33 22630.0 34-35 30849.0 36-37 49182.0 38-39 59570.0 40-41 59380.0 42-43 65465.0 44-45 78039.0 46-47 78040.0 48-49 75008.0 50-51 69249.0 52-53 66469.0 54-55 71849.0 56-57 75966.0 58-59 75747.0 60-61 74259.0 62-63 71794.0 64-65 73661.0 66-67 78889.0 68-69 78141.0 70-71 77618.0 72-73 72666.0 74-75 73628.0 76-77 73817.0 78-79 78090.0 80-81 79922.0 82-83 75517.0 84-85 73972.0 86-87 77053.0 88-89 82507.0 90-91 88104.0 92-93 86864.0 94-95 96059.0 96-97 148413.0 98-99 683617.0 100-101 5058949.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.21912914798028 #Duplication Level Percentage of deduplicated Percentage of total 1 90.18515503693085 77.75685529359765 2 6.985959860796402 12.04646750921223 3 1.6525167788635324 4.274356727281178 4 0.5755083772195556 1.9847932440494969 5 0.2508560684369774 1.081429588106117 6 0.12307988629734555 0.636710436731374 7 0.07027899281199396 0.42415754903531 8 0.04392998389542325 0.3030083963958553 9 0.025764065664342205 0.19992197744018686 >10 0.08466653859851855 1.0962272476295827 >50 0.0018283707877962516 0.10018296411445006 >100 4.1358903381565656E-4 0.0613747714915862 >500 2.1225444577771167E-5 0.011273042379208766 >1k 2.1225218843930588E-5 0.023241252535677253 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.651476322306078E-5 0.0 0.0 0.0 3 0.0 3.651476322306078E-5 0.0 0.0 0.0 4 0.0 7.302952644612155E-5 0.0 1.2171587741020258E-5 0.0 5 0.0 7.302952644612155E-5 0.0 2.4343175482040517E-5 0.0 6 0.0 7.302952644612155E-5 0.0 2.4343175482040517E-5 1.2171587741020258E-5 7 0.0 7.302952644612155E-5 0.0 7.302952644612155E-5 1.2171587741020258E-5 8 0.0 7.302952644612155E-5 0.0 7.302952644612155E-5 1.2171587741020258E-5 9 0.0 1.3388746515122284E-4 0.0 7.302952644612155E-5 2.4343175482040517E-5 10-11 0.0 1.3388746515122284E-4 0.0 7.302952644612155E-5 2.4343175482040517E-5 12-13 0.0 1.3388746515122284E-4 0.0 7.302952644612155E-5 2.4343175482040517E-5 14-15 0.0 1.8865960998581401E-4 0.0 7.302952644612155E-5 6.08579387051013E-5 16-17 0.0 2.1300278546785453E-4 0.0 7.302952644612155E-5 7.302952644612155E-5 18-19 0.0 2.3126016707938492E-4 0.0 8.520111418714181E-5 7.302952644612155E-5 20-21 0.0 2.434317548204052E-4 0.0 1.2780167128071272E-4 7.302952644612155E-5 22-23 0.0 2.616891364319356E-4 0.0 1.7648802224479377E-4 7.911532031663169E-5 24-25 0.0 3.0428969352550646E-4 0.0 2.069169915973444E-4 8.520111418714181E-5 26-27 0.0 3.1646128126652676E-4 0.0 2.251743732088748E-4 8.520111418714181E-5 28-29 0.0 3.28632869007547E-4 0.0 5.233782728638712E-4 8.520111418714181E-5 30-31 0.0 3.7731921997162803E-4 0.0 0.0014362473534403905 8.520111418714181E-5 32-33 0.0 3.8949080771264827E-4 1.2171587741020258E-5 0.002994210584290984 9.737270192816207E-5 34-35 0.0 4.6860612802928E-4 1.2171587741020258E-5 0.005069466294134938 9.737270192816207E-5 36-37 0.0 5.355498606048914E-4 1.2171587741020258E-5 0.007917617825533678 1.034584957986722E-4 38-39 0.0 5.477214483459116E-4 1.2171587741020258E-5 0.012481963228416276 1.0954428966918232E-4 40-41 0.0 5.720646238279521E-4 1.2171587741020258E-5 0.017764432308019065 1.0954428966918232E-4 42-43 0.0 5.781504176984623E-4 1.2171587741020258E-5 0.02260872422894513 1.0954428966918232E-4 44-45 0.0 6.329225625330535E-4 1.2171587741020258E-5 0.027982480216605574 1.0954428966918232E-4 46-47 0.0 6.694373257561143E-4 1.2171587741020258E-5 0.033903957652611935 1.1563008353969246E-4 48-49 0.0 6.694373257561143E-4 1.2171587741020258E-5 0.03991672199667594 1.217158774102026E-4 50-51 0.0 8.094105847778472E-4 1.2171587741020258E-5 0.04617900388943086 1.217158774102026E-4 52-53 0.0 8.276679663893776E-4 1.2171587741020258E-5 0.05198485124189753 1.39973259021733E-4 54-55 0.0 8.398395541303978E-4 1.2171587741020258E-5 0.058034130349184594 1.5823064063326338E-4 56-57 0.0 8.520111418714181E-4 1.2171587741020258E-5 0.06382780611391024 1.5823064063326338E-4 58-59 0.0 8.641827296124384E-4 1.2171587741020258E-5 0.06959105290928333 1.5823064063326338E-4 60-61 0.0 8.763543173534586E-4 1.2171587741020258E-5 0.0750378384233899 1.5823064063326338E-4 62-63 0.0 8.763543173534586E-4 1.2171587741020258E-5 0.08072805569231686 1.5823064063326338E-4 64-65 0.0 9.980701947636611E-4 1.2171587741020258E-5 0.08602878215353119 1.5823064063326338E-4 66-67 0.0 0.0010102417825046815 1.2171587741020258E-5 0.0917981147427748 1.5823064063326338E-4 68-69 0.0 0.001028499164116212 1.2171587741020258E-5 0.09753093256879533 1.5823064063326338E-4 70-71 0.0 0.0010528423395982523 1.2171587741020258E-5 0.10301423284612496 1.7040222837428362E-4 72-73 0.0 0.0010589281334687625 1.2171587741020258E-5 0.10765160777545368 1.825738161153039E-4 74-75 0.0 0.0010589281334687625 1.2171587741020258E-5 0.11169866069934292 1.825738161153039E-4 76-77 0.0 0.0010710997212097827 1.2171587741020258E-5 0.11526493590746184 1.825738161153039E-4 78-79 0.0 0.0010832713089508031 1.2171587741020258E-5 0.11850866404044375 1.825738161153039E-4 80-81 0.0 0.0010954428966918233 1.2171587741020258E-5 0.12000576933258925 1.8865960998581401E-4 82-83 0.0 0.0011137002783033537 1.2171587741020258E-5 0.12054740498706465 1.9474540385632414E-4 84-85 0.0 0.0011502150415264145 1.2171587741020258E-5 0.12096732476412984 1.9474540385632414E-4 86-87 0.0 0.001174558217008455 1.2171587741020258E-5 0.1211864133434682 1.9474540385632414E-4 88-89 0.0 0.0012536735373250866 1.2171587741020258E-5 0.1213020434270079 2.069169915973444E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8390 0.0 42.26605 1 GTATCAA 14290 0.0 33.62087 1 ATCAACG 15985 0.0 28.81082 3 TCAACGC 15950 0.0 28.793825 4 CAACGCA 16400 0.0 27.952423 5 AACGCAG 16990 0.0 27.081486 6 TATCAAC 17885 0.0 26.128511 2 TACATGG 21250 0.0 22.928045 2 ACGCAGA 20090 0.0 22.88157 7 GTACATG 21965 0.0 22.87608 1 CGCAGAG 20485 0.0 22.398994 8 ACATGGG 21475 0.0 21.9584 3 CATGGGG 16145 0.0 19.392649 4 GCAGAGT 25405 0.0 18.177885 9 GAGTACT 14360 0.0 17.304125 12-13 AGAGTAC 22365 0.0 16.897717 10-11 CAGAGTA 24420 0.0 16.45598 10-11 ATGGGGG 10500 0.0 15.534864 5 AGGACCG 1420 0.0 15.21661 5 GTACTTT 16515 0.0 15.123714 14-15 >>END_MODULE