##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139999_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6981835 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73377400067461 34.0 31.0 34.0 31.0 34.0 2 32.91609999376955 34.0 31.0 34.0 31.0 34.0 3 33.014666344879245 34.0 33.0 34.0 31.0 34.0 4 36.39980449265845 37.0 37.0 37.0 35.0 37.0 5 36.24463926747052 37.0 37.0 37.0 35.0 37.0 6 36.297091667162 37.0 37.0 37.0 35.0 37.0 7 36.3000456183797 37.0 37.0 37.0 35.0 37.0 8 36.285143089173545 37.0 37.0 37.0 35.0 37.0 9 38.18626177788504 39.0 39.0 39.0 37.0 39.0 10-11 38.08455040830957 39.0 38.0 39.0 37.0 39.0 12-13 38.12106258598205 39.0 38.0 39.0 37.0 39.0 14-15 39.55890664846706 41.0 39.0 41.0 37.0 41.0 16-17 39.539293180088045 41.0 39.0 41.0 37.0 41.0 18-19 39.58718746575936 41.0 39.5 41.0 37.0 41.0 20-21 39.603613863332086 41.0 39.5 41.0 37.0 41.0 22-23 39.53998902669029 41.0 39.0 41.0 37.0 41.0 24-25 39.49933420368923 41.0 39.0 41.0 37.0 41.0 26-27 39.46102102762967 41.0 39.0 41.0 37.0 41.0 28-29 39.36642614881967 40.5 39.0 41.0 36.5 41.0 30-31 39.28022789919912 40.0 39.0 41.0 36.0 41.0 32-33 39.17973559437069 40.0 39.0 41.0 36.0 41.0 34-35 39.111187590115726 40.0 39.0 41.0 35.5 41.0 36-37 39.11548267580639 40.0 39.0 41.0 35.0 41.0 38-39 39.104478170608516 40.0 39.0 41.0 35.0 41.0 40-41 39.072561719520884 40.0 39.0 41.0 35.0 41.0 42-43 39.04064343115472 40.0 39.0 41.0 35.0 41.0 44-45 39.0070674079306 40.0 39.0 41.0 35.0 41.0 46-47 38.94150208374157 40.0 38.0 41.0 35.0 41.0 48-49 38.9145236895899 40.0 38.0 41.0 35.0 41.0 50-51 38.8159207727156 40.0 38.0 41.0 35.0 41.0 52-53 38.65409335528686 40.0 38.0 41.0 35.0 41.0 54-55 38.51902824850856 40.0 38.0 41.0 34.5 41.0 56-57 38.36260470495941 40.0 37.5 41.0 34.0 41.0 58-59 38.181739810705565 40.0 37.0 41.0 34.0 41.0 60-61 38.05699802274955 40.0 37.0 41.0 34.0 41.0 62-63 37.89142836198475 39.0 36.0 41.0 34.0 41.0 64-65 37.65098938013834 39.0 36.0 41.0 33.5 41.0 66-67 37.38817301517484 39.0 35.0 40.5 33.0 41.0 68-69 37.135725106995366 38.0 35.0 40.0 33.0 41.0 70-71 36.84068506593209 37.5 35.0 40.0 33.0 41.0 72-73 36.487249484015656 37.0 35.0 39.0 33.0 41.0 74-75 36.10357452140455 36.5 35.0 39.0 32.0 40.5 76-77 34.16523760735825 34.5 33.0 36.5 29.5 39.0 78-79 35.229579270141485 35.0 34.0 37.0 31.5 39.0 80-81 35.14728055015651 35.0 34.0 37.0 32.0 39.0 82-83 34.86337017822029 35.0 34.0 37.0 32.0 39.0 84-85 34.614790605091805 35.0 34.0 36.0 31.5 37.5 86-87 34.40250861806708 35.0 34.0 36.0 31.0 37.0 88-89 34.242033595806205 35.0 34.0 35.5 31.0 37.0 90-91 34.09974312293724 35.0 34.0 35.0 31.0 36.0 92-93 34.010620672125754 35.0 34.0 35.0 31.0 36.0 94-95 33.927911961567105 35.0 34.0 35.0 31.0 36.0 96-97 33.88967197281566 35.0 34.0 35.0 31.0 36.0 98-99 33.91015685845501 35.0 34.0 35.0 31.0 35.5 100-101 32.666116505848805 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 7.0 20 21.0 21 86.0 22 344.0 23 1058.0 24 2903.0 25 6385.0 26 12038.0 27 19959.0 28 30048.0 29 42580.0 30 58862.0 31 78168.0 32 105425.0 33 147493.0 34 226804.0 35 369504.0 36 733917.0 37 1624254.0 38 2358057.0 39 1138910.0 40 25009.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.2461859955155 20.037096264807175 13.09384996924161 24.622867770435708 2 14.775077207684303 21.32159560733322 40.99559742176035 22.90772976322213 3 18.457351572011746 26.012619064670915 30.273551529041036 25.256477834276303 4 12.22537469039282 17.82003889810567 39.17366375668503 30.78092265481648 5 12.944535776702798 38.01687350343764 36.03369830906893 13.00489241079063 6 29.90407249670037 38.20326604682007 18.89321360358702 12.999447852892542 7 26.476721377689387 32.388877709083644 23.40366107191018 17.73073984131679 8 24.410060985871656 36.79013993707336 21.613783073402047 17.186016003652938 9 25.545259644312186 16.394843724128528 21.20005534525758 36.8598412863017 10-11 24.12216929788798 26.710717575148024 29.276155668537086 19.890957458426914 12-13 24.774832776195176 24.1832670635169 29.31423523209093 21.727664928196997 14-15 21.81519002444275 25.731049852219883 26.66728780316838 25.786472320168986 16-17 21.728979726532195 28.9019808253993 27.356190494742282 22.012848953326223 18-19 21.706786253184156 28.233422875218334 28.7100382635797 21.349752608017805 20-21 22.47642094701512 27.48805336337434 28.54440639584162 21.491119293768914 22-23 22.093955351497446 27.59047462705296 28.36026923293995 21.95530078850964 24-25 21.93933526643665 27.614505280979696 28.55720655992404 21.88895289265961 26-27 21.958533719006404 27.824243899638912 28.386880073452076 21.83034230790261 28-29 21.724682515158474 27.878428714738117 28.430840972778533 21.966047797324876 30-31 22.146626149668155 27.676834439381697 28.448196419191625 21.728342991758527 32-33 21.81836780636273 27.94139735081448 28.29250898219769 21.947725860625106 34-35 21.91561510985211 27.959301441530798 28.466778936524246 21.658304512092847 36-37 22.049300087015204 27.811184053120208 28.302137677700877 21.837378182163707 38-39 21.78616072452844 27.871285383240853 28.44952535488155 21.89302853734916 40-41 22.030527651554884 27.740939581626655 28.377906334188836 21.850626432629625 42-43 22.023541840980446 27.766378328534664 28.276471954816675 21.933607875668216 44-45 21.979047558412486 27.982744764114926 28.112846997751596 21.925360679720995 46-47 22.109377725258593 27.820454916527748 27.823286800117337 22.246880558096322 48-49 22.002854314138276 27.8804632391214 27.968656603458847 22.14802584328147 50-51 21.94717546424733 28.050395516233035 27.885284671715276 22.117144347804356 52-53 22.0904642311576 27.98847268435401 27.86763605408884 22.053427030399554 54-55 22.07010453109554 27.93123973303313 27.835266454291553 22.163389281579775 56-57 22.192498323842848 28.07339812456078 27.642671146644883 22.091432404951494 58-59 22.007309516716138 28.171815736098903 27.811807938627197 22.00906680855777 60-61 22.155667909232683 28.234128732818515 27.649953057237898 21.960250300710907 62-63 22.04239373233563 28.28892431011741 27.63190882532222 22.036773132224745 64-65 22.034633542954865 28.1774930716044 27.67283984997992 22.115033535460814 66-67 22.13567411015725 28.17332783309731 27.53401554002688 22.156982516718557 68-69 22.118232873824116 28.13403504108584 27.623167071761234 22.124565013328805 70-71 22.097063728039284 27.85489094071049 27.717336619881866 22.330708711368356 72-73 22.13624885866033 27.918013562705994 27.70518354436873 22.240554034264946 74-75 22.016213389357418 28.06848806925903 27.64028191028714 22.275016631096417 76-77 22.08893890947309 28.026901465733683 27.577812705279147 22.30634691951408 78-79 22.12694906767106 28.035874947307494 27.51882218966194 22.318353795359506 80-81 22.098726412940582 28.005339279283554 27.570615737560377 22.325318570215487 82-83 22.19417012839027 27.94107628764384 27.665357734347708 22.199395849618185 84-85 22.297982118551797 27.934222674692457 27.57728652896582 22.19050867778993 86-87 22.09036988103368 27.986562574833346 27.636338863029238 22.28672868110374 88-89 22.195865510225172 27.967481554418296 27.58954942372562 22.247103511630907 90-91 22.2316860975304 27.960416196565124 27.597542935940826 22.210354769963644 92-93 22.23456060024806 27.948408697185073 27.613999501191877 22.203031201374994 94-95 22.07081216347239 28.043231509068985 27.686837275007846 22.19911905245078 96-97 22.102920565631667 28.044641519173908 27.715250300573828 22.137187614620593 98-99 22.375573653703174 28.56870711864325 27.746363853639078 21.309355374014498 100-101 26.3946762928649 35.69923082582675 28.324693827951663 9.581399053356684 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 883.0 1 838.5 2 1235.5 3 1811.5 4 2533.0 5 4358.0 6 5942.5 7 6850.0 8 7272.0 9 6987.0 10 6335.5 11 5679.0 12 6101.5 13 8059.0 14 12553.5 15 18543.5 16 23377.5 17 26483.0 18 27722.0 19 27316.5 20 26276.5 21 25707.5 22 26896.5 23 30762.0 24 37825.0 25 48088.0 26 61891.5 27 77528.0 28 93817.0 29 111046.0 30 126885.0 31 141940.0 32 157637.5 33 173996.5 34 191620.0 35 208738.0 36 226275.5 37 241636.5 38 252163.0 39 262121.5 40 274389.5 41 285128.0 42 292235.0 43 299185.5 44 306027.0 45 312040.0 46 317186.0 47 320593.5 48 318148.0 49 311769.0 50 304960.0 51 293666.5 52 275737.0 53 257344.0 54 240046.5 55 219577.5 56 198834.5 57 177428.0 58 155676.0 59 135090.5 60 114267.0 61 93680.0 62 74456.0 63 57911.0 64 43862.0 65 32991.0 66 24903.5 67 19090.5 68 14626.0 69 10511.5 70 7487.0 71 5413.0 72 3822.0 73 2655.0 74 1899.5 75 1311.5 76 860.5 77 581.5 78 380.0 79 257.5 80 188.5 81 138.5 82 104.5 83 75.0 84 52.0 85 36.5 86 27.0 87 20.5 88 13.5 89 10.0 90 7.5 91 5.0 92 5.0 93 3.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.4348899680384886E-4 3 0.004798165525252316 4 5.729152865972914E-5 5 1.4322882164932286E-5 6 0.0 7 0.0 8 7.734356369063434E-4 9 0.002964836608140983 10-11 9.238258996381323E-4 12-13 3.437491719583748E-4 14-15 1.360673805668567E-4 16-17 0.0014179653343282961 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 6.679844395538726E-4 32-33 6.699458957457571E-4 34-35 3.61523175226234E-5 36-37 7.051897018457941E-4 38-39 6.963695397114625E-4 40-41 5.178288089027496E-5 42-43 4.4791529026030595E-5 44-45 8.825782448988674E-4 46-47 0.0 48-49 4.7108317699421287E-4 50-51 7.810351543141922E-6 52-53 2.368106904555109E-5 54-55 7.897987991548036E-4 56-57 9.122409659485474E-4 58-59 7.356099972341064E-5 60-61 8.275491098674886E-5 62-63 0.0 64-65 2.5432298204886663E-5 66-67 0.0 68-69 8.697993068569324E-6 70-71 2.9075578971871665E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 3.145811509265988E-4 80-81 0.0 82-83 9.501310420733227E-6 84-85 3.84898914479214E-5 86-87 2.1441824286004308E-4 88-89 0.0 90-91 0.0 92-93 0.0 94-95 4.1372619393622204E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 189.0 20-21 474.0 22-23 884.0 24-25 2469.0 26-27 3761.0 28-29 8436.0 30-31 19260.0 32-33 24013.0 34-35 32770.0 36-37 52699.0 38-39 62889.0 40-41 60520.0 42-43 66455.0 44-45 76953.0 46-47 76755.0 48-49 74001.0 50-51 68858.0 52-53 65650.0 54-55 72058.0 56-57 76393.0 58-59 75583.0 60-61 74127.0 62-63 70972.0 64-65 72107.0 66-67 76575.0 68-69 73923.0 70-71 71697.0 72-73 66357.0 74-75 66737.0 76-77 66737.0 78-79 70560.0 80-81 71680.0 82-83 66699.0 84-85 65768.0 86-87 68088.0 88-89 73200.0 90-91 77446.0 92-93 74517.0 94-95 81357.0 96-97 122806.0 98-99 554399.0 100-101 4095013.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.72277696565737 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82848535802177 79.6772696319022 2 6.743690606116029 11.831505339314303 3 1.4939996512200258 3.9317339457223275 4 0.48598471377992103 1.7052771462253937 5 0.19680667981753405 0.8632214239492542 6 0.09989880913113841 0.5258040571527378 7 0.049513439220778 0.3040419469896858 8 0.030383584558765917 0.21322659293326512 9 0.01909150524932859 0.15072838712329756 >10 0.05107392978240579 0.6558961395846746 >50 7.615511873318013E-4 0.0464049342632248 >100 2.422439352997269E-4 0.03951320913777058 >500 4.528547168983626E-5 0.029238015673736552 >1k 2.2642508008286012E-5 0.02613923002819444 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.864576432986457E-5 0.0 0.0 0.0 3 0.0 2.864576432986457E-5 0.0 0.0 0.0 4 0.0 5.729152865972914E-5 0.0 0.0 0.0 5 0.0 5.729152865972914E-5 0.0 0.0 0.0 6 0.0 5.729152865972914E-5 0.0 0.0 0.0 7 0.0 5.729152865972914E-5 0.0 0.0 0.0 8 0.0 7.161441082466142E-5 0.0 0.0 0.0 9 0.0 1.5755170381425514E-4 0.0 1.4322882164932286E-5 0.0 10-11 0.0 1.5755170381425514E-4 0.0 7.161441082466142E-5 0.0 12-13 0.0 1.5755170381425514E-4 0.0 8.593729298959371E-5 0.0 14-15 0.0 3.079419665460441E-4 0.0 1.1458305731945827E-4 0.0 16-17 0.0 3.151034076285103E-4 0.0 1.50390262731789E-4 0.0 18-19 0.0 3.437491719583748E-4 0.0 2.0768179139151813E-4 0.0 20-21 0.0 3.723949362882394E-4 0.0 2.578118789687811E-4 0.0 22-23 0.0 4.01040700618104E-4 0.0 3.151034076285103E-4 1.4322882164932286E-5 24-25 0.0 4.082021417005701E-4 0.0 3.9387925953563786E-4 2.864576432986457E-5 26-27 0.0 4.1536358278303627E-4 0.0 4.5117078819536697E-4 2.864576432986457E-5 28-29 0.0 4.1536358278303627E-4 0.0 7.805970779888095E-4 2.864576432986457E-5 30-31 0.0 4.5833222927783314E-4 0.0 0.0020768179139151813 2.864576432986457E-5 32-33 0.0 4.6549367036029926E-4 0.0 0.004361317619221881 2.864576432986457E-5 34-35 0.0 5.58592404432359E-4 0.0 0.007190086846796007 2.864576432986457E-5 36-37 0.0 6.445296974219528E-4 0.0 0.011336561233543905 3.580720541233072E-5 38-39 0.0 6.588525795868851E-4 0.0 0.01791792558833029 4.296864649479686E-5 40-41 0.0 7.01821226081682E-4 0.0 0.02513665819945616 4.296864649479686E-5 42-43 0.0 7.233055493290803E-4 0.0 0.031574793732593226 4.296864649479686E-5 44-45 0.0 7.877585190712757E-4 0.0 0.03877920346155416 4.296864649479686E-5 46-47 0.0 8.307271655660725E-4 0.0 0.047501838699997925 4.296864649479686E-5 48-49 0.0 8.307271655660725E-4 0.0 0.055372262449628215 5.729152865972914E-5 50-51 0.0 9.59633105050463E-4 0.0 0.06373682563394867 5.729152865972914E-5 52-53 0.0 9.739559872153954E-4 0.0 0.07117040147754852 7.161441082466144E-5 54-55 0.0 0.00100260175154526 0.0 0.0782817124724374 8.593729298959371E-5 56-57 0.0 0.001059893280204989 0.0 0.08582987137335671 9.309873407205985E-5 58-59 0.0 0.001059893280204989 0.0 0.09360719638891495 1.00260175154526E-4 60-61 0.0 0.0010742161623699213 0.0 0.10084741332328821 1.00260175154526E-4 62-63 0.0 0.001102861926699786 0.0 0.1075791679408064 1.00260175154526E-4 64-65 0.0 0.0012317678661841766 0.0 0.11391704329878893 1.00260175154526E-4 66-67 0.0 0.0012389293072666428 0.0 0.12036234027300846 1.0742161623699214E-4 68-69 0.0 0.0012675750715965073 0.0 0.12710841777269155 1.1458305731945829E-4 70-71 0.0 0.0012747365126789733 0.0 0.13359668339340589 1.1458305731945829E-4 72-73 0.0 0.0012747365126789733 0.0 0.13908234726257496 1.1458305731945829E-4 74-75 0.0 0.0012890593948439058 0.0 0.14405238737380646 1.1458305731945829E-4 76-77 0.0 0.0013391894824211687 0.0 0.14834209058220366 1.1458305731945829E-4 78-79 0.0 0.001360673805668567 0.0 0.15219494588457044 1.1458305731945829E-4 80-81 0.0 0.001360673805668567 0.0 0.15379910868704288 1.1458305731945829E-4 82-83 0.0 0.001360673805668567 0.0 0.15452957567745443 1.1458305731945829E-4 84-85 0.0 0.0013678352467510332 0.0 0.1550881680818868 1.1458305731945829E-4 86-87 0.0 0.0014179653343282961 0.0 0.15531017275544323 1.1458305731945829E-4 88-89 0.0 0.0015182255094828223 0.0 0.15541759437168023 1.1458305731945829E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6670 0.0 40.67721 1 GTATCAA 10880 0.0 31.53377 1 TCAACGC 12495 0.0 26.263271 4 ATCAACG 12520 0.0 26.144743 3 CAACGCA 12790 0.0 25.592821 5 AACGCAG 13310 0.0 24.717808 6 TATCAAC 13640 0.0 24.453669 2 GTACATG 19125 0.0 22.451128 1 TACATGG 18425 0.0 22.291027 2 CTTATAC 5060 0.0 22.054693 1 ACATGGG 18635 0.0 21.372414 3 ACGCAGA 15700 0.0 20.822908 7 CGCAGAG 15985 0.0 20.425697 8 CATGGGG 13285 0.0 19.392717 4 TATACAC 8125 0.0 17.667067 3 TATACCG 455 0.0 16.412426 5 AGAGTAC 17420 0.0 16.241966 10-11 GCAGAGT 20180 0.0 16.179506 9 GAGTACA 13175 0.0 15.964547 1 GAGTACT 10910 0.0 15.609398 12-13 >>END_MODULE