##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139995_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4109883 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.446374994130004 34.0 31.0 34.0 31.0 34.0 2 32.633798821037 34.0 31.0 34.0 31.0 34.0 3 32.72310744612438 34.0 31.0 34.0 31.0 34.0 4 36.20490291329461 37.0 37.0 37.0 35.0 37.0 5 36.01222638211355 37.0 35.0 37.0 35.0 37.0 6 36.072974826777305 37.0 35.0 37.0 35.0 37.0 7 36.06017178591215 37.0 35.0 37.0 35.0 37.0 8 36.060047451472464 37.0 35.0 37.0 35.0 37.0 9 37.933673051033324 39.0 38.0 39.0 35.0 39.0 10-11 37.78683395610045 39.0 38.0 39.0 35.0 39.0 12-13 37.792416718432136 39.0 38.0 39.0 35.0 39.0 14-15 39.15121026559637 40.0 39.0 41.0 36.0 41.0 16-17 39.113373665381715 40.0 39.0 41.0 36.0 41.0 18-19 39.144222353775035 40.0 39.0 41.0 36.0 41.0 20-21 39.151230313375514 40.0 39.0 41.0 36.0 41.0 22-23 39.08725656219625 40.0 39.0 41.0 36.0 41.0 24-25 39.108834778192566 40.0 39.0 41.0 36.0 41.0 26-27 39.00321703956272 40.0 39.0 41.0 36.0 41.0 28-29 38.924682069606106 40.0 38.0 41.0 35.0 41.0 30-31 38.827374196020095 40.0 38.0 41.0 35.0 41.0 32-33 38.750560826095565 40.0 38.0 41.0 35.0 41.0 34-35 38.69967537181295 40.0 38.0 41.0 35.0 41.0 36-37 38.68309518231707 40.0 38.0 41.0 35.0 41.0 38-39 38.60370231482783 40.0 38.0 41.0 35.0 41.0 40-41 38.57040900153147 40.0 38.0 41.0 35.0 41.0 42-43 38.51558827897311 40.0 38.0 41.0 34.0 41.0 44-45 38.420856617400574 40.0 38.0 41.0 34.0 41.0 46-47 38.345002786964244 40.0 38.0 41.0 34.0 41.0 48-49 38.339377539790604 40.0 38.0 41.0 34.0 41.0 50-51 38.262233854216774 40.0 38.0 41.0 34.0 41.0 52-53 38.07592784964049 40.0 37.0 41.0 33.0 41.0 54-55 37.90261984518701 40.0 37.0 41.0 33.0 41.0 56-57 37.762001259886546 39.0 36.5 41.0 33.0 41.0 58-59 37.58425262211391 39.0 36.0 41.0 33.0 41.0 60-61 37.39106952937176 39.0 36.0 40.5 32.5 41.0 62-63 37.21011661133848 39.0 35.0 40.0 32.0 41.0 64-65 36.98451540868078 38.5 35.0 40.0 32.0 41.0 66-67 36.682208782642135 38.0 35.0 40.0 32.0 41.0 68-69 36.41967963726363 37.0 35.0 40.0 31.5 41.0 70-71 36.116503728133154 37.0 35.0 39.0 31.0 41.0 72-73 35.80583851388063 36.0 34.5 39.0 31.0 41.0 74-75 35.37777380622886 36.0 34.0 39.0 31.0 40.0 76-77 33.477464074964345 34.5 32.0 36.5 28.0 39.0 78-79 34.55494965163403 35.0 34.0 37.0 30.0 39.0 80-81 34.54264185752566 35.0 34.0 36.5 30.5 39.0 82-83 34.3159023046816 35.0 34.0 36.0 30.0 38.0 84-85 34.0731535837559 35.0 34.0 36.0 30.0 37.0 86-87 33.86223655229004 35.0 34.0 35.5 30.0 37.0 88-89 33.72031378065834 35.0 34.0 35.0 30.0 36.5 90-91 33.65057868182899 35.0 34.0 35.0 30.0 36.0 92-93 33.54205753061386 35.0 33.5 35.0 30.0 36.0 94-95 33.45065057609612 35.0 33.0 35.0 30.0 36.0 96-97 33.44980128320318 35.0 33.0 35.0 30.0 35.0 98-99 33.57694374735482 35.0 33.0 35.0 30.0 35.0 100-101 32.32698773912222 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 18.0 21 81.0 22 315.0 23 1117.0 24 3052.0 25 6551.0 26 12024.0 27 19624.0 28 29321.0 29 40503.0 30 54405.0 31 70891.0 32 93836.0 33 128359.0 34 188365.0 35 296574.0 36 541842.0 37 1008304.0 38 1141115.0 39 464949.0 40 8630.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.280838651611255 19.78895749587032 13.670316162284912 24.259887690233516 2 14.934416488511875 20.824766249395946 41.30680858705284 22.934008675039333 3 18.65474483209007 25.55214480610392 29.870151989765155 25.92295837204085 4 12.78593686851667 17.55879204850181 38.26899994574033 31.386271137241177 5 13.530677150663415 37.650974492461216 35.309374987073845 13.508973369801524 6 30.808297949114365 37.41208691342308 18.474735168860036 13.304879968602512 7 27.31562926572891 32.04686857479336 22.791553826351223 17.84594833312651 8 24.70532329337155 36.88011926489649 20.849068930370333 17.565488511361625 9 25.814792646013995 16.650583472023513 20.84116811196434 36.69345576999815 10-11 24.530694878037178 26.507760142359405 28.702678509187436 20.25886647041598 12-13 25.33056958409451 23.93654942387556 28.774043304469526 21.958837687560404 14-15 22.41017440650958 25.34974856936247 26.24801058716785 25.992066436960098 16-17 22.193282418527875 28.475144724701888 26.909585018706178 22.421987838064055 18-19 22.254161493161728 27.825524473567736 28.338933249438004 21.581380783832532 20-21 22.97912665222852 27.03025964455682 28.187310821712796 21.803302881501864 22-23 22.718753813752713 26.945331759831436 28.06206547554082 22.273848950875035 24-25 22.483036757778667 27.052502714885485 28.155045001440353 22.3094155258955 26-27 22.44518886607789 27.205393731647337 28.071942558160544 22.27747484411423 28-29 22.391334197804966 27.272378376870236 28.076268767260448 22.260018658064347 30-31 22.677132074219326 27.13581395655292 27.973600505529504 22.213453463698254 32-33 22.41991911788092 27.323428168800447 27.966240400447223 22.290412312871414 34-35 22.5279107298421 27.342728680720786 27.950109259783527 22.179251329653585 36-37 22.528481894759967 27.266368082081215 27.896223836606858 22.308926186551957 38-39 22.369782028665192 27.381288367390656 27.999361572576813 22.24956803136734 40-41 22.625173434785832 27.20490204818402 27.89236459333458 22.277559923695573 42-43 22.481983453746054 27.31594822040889 27.737045179309888 22.465023146535167 44-45 22.572240620150623 27.39953095031135 27.592031038048365 22.436197391489664 46-47 22.62482049173218 27.374710457581436 27.39065818091863 22.609810869767756 48-49 22.55896557593708 27.491638761247373 27.383730449165267 22.56566521365028 50-51 22.54819693040641 27.565164421160894 27.29856988479518 22.588068763637516 52-53 22.753713441924823 27.44719497556301 27.18018146387492 22.618910118637245 54-55 22.697486878404074 27.362952109062295 27.234984086113506 22.704576926420124 56-57 22.706596212703936 27.490234006263613 27.21327463128721 22.58989514974524 58-59 22.66642648587339 27.5672865038924 27.177882946200775 22.588404064033433 60-61 22.745609424273773 27.512815224792686 27.195122656370245 22.546452694563293 62-63 22.704909197748286 27.56238286805075 27.12537769077513 22.60733024342583 64-65 22.698409754949022 27.51480204330432 27.144824714530518 22.641963487216145 66-67 22.750740751048014 27.5334055010669 26.9857438435452 22.73010990433989 68-69 22.656766105414388 27.546637533179712 27.115967138965903 22.68062922244 70-71 22.718104260171906 27.300012852621098 27.15482906377006 22.827053823436934 72-73 22.747834153689606 27.39723612982975 27.053808634714876 22.801121081765764 74-75 22.598911421167138 27.49882305767389 27.090242145673532 22.812023375485442 76-77 22.718411867377853 27.4549965056985 26.97518152269238 22.851410104231267 78-79 22.711525638433166 27.473572921023447 26.93094024173491 22.88396119880848 80-81 22.685745237047268 27.491328551695123 26.987358770812016 22.835567440445597 82-83 22.7263994938473 27.462255723563906 27.055708244815253 22.755636537773544 84-85 22.817938215739744 27.43923096001107 26.980845536828248 22.761985287420945 86-87 22.631957328422892 27.455942177263022 27.11476033766299 22.7973401566511 88-89 22.72246692333078 27.43555895878107 27.050255721367627 22.791718396520523 90-91 22.73664586764756 27.427710036683617 27.059562645291685 22.776081450377138 92-93 22.755972327136114 27.443155159045755 27.03822821793545 22.76264429588268 94-95 22.669551466500984 27.473406103840958 27.067760721479555 22.789281708178503 96-97 22.630598339986303 27.507690164794663 27.09251435462951 22.76919714058952 98-99 22.890310051082864 28.071918066389774 27.1648113380264 21.872960544500962 100-101 27.228026785407934 35.13319529357723 27.659185117288278 9.97959280372656 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 894.0 1 793.5 2 1029.0 3 1459.5 4 1964.0 5 3052.5 6 3960.0 7 4587.5 8 5054.0 9 5075.5 10 4693.5 11 4298.0 12 4651.0 13 6014.0 14 9132.0 15 13220.5 16 16280.5 17 17944.0 18 18181.0 19 17287.0 20 16168.5 21 15351.5 22 15515.5 23 17283.5 24 20841.5 25 26329.5 26 33238.0 27 40810.0 28 48952.5 29 57425.5 30 65223.0 31 72830.5 32 81267.5 33 90024.0 34 98466.0 35 106316.0 36 115458.5 37 123847.5 38 130412.0 39 136359.0 40 142232.0 41 148817.0 42 154000.5 43 158776.0 44 164421.5 45 169190.5 46 172493.0 47 175814.0 48 178514.5 49 178767.5 50 177209.5 51 174197.0 52 169307.5 53 162580.0 54 155017.5 55 145814.0 56 135034.0 57 123258.5 58 110452.5 59 97229.0 60 82563.5 61 67521.5 62 53955.0 63 42205.0 64 31903.5 65 23911.0 66 18150.5 67 13823.0 68 10381.0 69 7419.5 70 5257.5 71 3724.5 72 2548.5 73 1668.0 74 1086.5 75 766.0 76 540.5 77 355.0 78 238.5 79 169.0 80 122.5 81 84.0 82 61.5 83 49.5 84 35.0 85 22.0 86 16.0 87 11.0 88 5.5 89 2.0 90 1.5 91 2.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003917386456013468 3 2.433159289449359E-5 4 3.8930548631189744E-4 5 0.0 6 0.0 7 0.002262838139187904 8 9.732637157797436E-4 9 7.299477868348077E-5 10-11 8.516057513072757E-5 12-13 1.7032115026145513E-4 14-15 4.866318578898718E-5 16-17 2.676475218394295E-4 18-19 0.0 20-21 1.2166280448093842E-4 22-23 0.0 24-25 0.0 26-27 6.087586242834302E-4 28-29 2.4367270321115544E-4 30-31 8.5409912674465E-5 32-33 0.00195718175613026 34-35 6.258453514048019E-4 36-37 0.0014547249528108182 38-39 0.004045857687079963 40-41 1.500379783632732E-4 42-43 8.568283867244522E-4 44-45 0.0017547094239339822 46-47 1.1565619986625003E-4 48-49 1.947565309655094E-4 50-51 2.753390964865551E-4 52-53 0.0 54-55 2.1363564200915243E-4 56-57 0.0016316845632796267 58-59 0.003501756941824372 60-61 0.0011977345470560305 62-63 0.0011682634556481992 64-65 0.0 66-67 9.939145452152316E-5 68-69 1.435807075772134E-5 70-71 1.452273359671763E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 106.0 20-21 338.0 22-23 657.0 24-25 1578.0 26-27 2358.0 28-29 4630.0 30-31 9999.0 32-33 12032.0 34-35 16617.0 36-37 25172.0 38-39 30118.0 40-41 30084.0 42-43 34173.0 44-45 40770.0 46-47 40490.0 48-49 38511.0 50-51 34681.0 52-53 33795.0 54-55 36484.0 56-57 38211.0 58-59 37695.0 60-61 37313.0 62-63 35869.0 64-65 37112.0 66-67 38921.0 68-69 39374.0 70-71 39315.0 72-73 37337.0 74-75 38157.0 76-77 36934.0 78-79 39898.0 80-81 39782.0 82-83 38623.0 84-85 38342.0 86-87 40130.0 88-89 42673.0 90-91 45014.0 92-93 47524.0 94-95 52615.0 96-97 79878.0 98-99 347202.0 100-101 2489371.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.46155848523395 #Duplication Level Percentage of deduplicated Percentage of total 1 93.07849200633412 84.20025448348373 2 5.221300432162287 9.44653948826052 3 1.044025112168996 2.8333241623358574 4 0.33883796545965017 1.2260724171778332 5 0.12836659686874824 0.580612120509636 6 0.06843316170286327 0.37143422758278233 7 0.03662304418303141 0.23190843572894218 8 0.02149973604003607 0.1555919703362252 9 0.01400596494567572 0.11403012753678426 >10 0.04703718147387399 0.6686655457834191 >50 7.333239053510201E-4 0.043710553947797944 >100 6.454747553482121E-4 0.1278564673164669 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.433159289449359E-5 0.0 0.0 0.0 3 0.0 2.433159289449359E-5 0.0 0.0 0.0 4 0.0 2.433159289449359E-5 0.0 0.0 0.0 5 0.0 2.433159289449359E-5 0.0 0.0 0.0 6 7.299477868348077E-5 2.433159289449359E-5 0.0 0.0 0.0 7 7.299477868348077E-5 2.433159289449359E-5 0.0 0.0 0.0 8 7.299477868348077E-5 4.866318578898718E-5 0.0 0.0 0.0 9 7.299477868348077E-5 2.189843360504423E-4 0.0 0.0 0.0 10-11 7.299477868348077E-5 2.189843360504423E-4 0.0 0.0 0.0 12-13 7.299477868348077E-5 2.189843360504423E-4 0.0 1.2165796447246795E-5 0.0 14-15 7.299477868348077E-5 3.528080969701571E-4 0.0 4.866318578898718E-5 0.0 16-17 7.299477868348077E-5 3.6497389341740385E-4 0.0 4.866318578898718E-5 0.0 18-19 7.299477868348077E-5 4.0147128275914426E-4 0.0 4.866318578898718E-5 0.0 20-21 7.299477868348077E-5 4.379686721008846E-4 0.0 9.732637157797436E-5 1.2165796447246795E-5 22-23 7.299477868348077E-5 4.623002649953782E-4 0.0 1.2165796447246795E-4 2.433159289449359E-5 24-25 7.299477868348077E-5 4.7446606144262496E-4 0.0 1.3382376091971475E-4 2.433159289449359E-5 26-27 7.299477868348077E-5 4.866318578898718E-4 0.0 1.9465274315594872E-4 2.433159289449359E-5 28-29 7.299477868348077E-5 4.866318578898718E-4 0.0 5.231292472316121E-4 2.433159289449359E-5 30-31 7.299477868348077E-5 5.35295043678859E-4 0.0 0.0012895744234081602 2.433159289449359E-5 32-33 7.299477868348077E-5 5.35295043678859E-4 0.0 0.0030292833153644522 4.866318578898718E-5 34-35 7.299477868348077E-5 5.96124025915093E-4 0.0 0.005584100569286279 4.866318578898718E-5 36-37 7.299477868348077E-5 6.569530081513269E-4 0.0 0.009051352556751616 4.866318578898718E-5 38-39 7.299477868348077E-5 6.569530081513269E-4 0.0 0.01416098706459527 4.866318578898718E-5 40-41 7.299477868348077E-5 6.812846010458205E-4 0.0 0.01961126387296183 4.866318578898718E-5 42-43 7.299477868348077E-5 7.177819903875609E-4 0.0 0.02475739577014723 4.866318578898718E-5 44-45 7.299477868348077E-5 8.27274158412782E-4 0.0 0.03206903943494255 4.866318578898718E-5 46-47 7.299477868348077E-5 9.124347335435096E-4 0.0 0.03880889066671728 4.866318578898718E-5 48-49 7.299477868348077E-5 9.246005299907564E-4 0.0 0.04546358132336127 4.866318578898718E-5 50-51 7.299477868348077E-5 9.854295122269903E-4 0.0 0.052410251094739194 4.866318578898718E-5 52-53 7.299477868348077E-5 9.975953086742372E-4 0.0 0.058602641486387816 6.082898223623398E-5 54-55 7.299477868348077E-5 0.001009761105121484 0.0 0.06475853448869469 7.299477868348077E-5 56-57 7.299477868348077E-5 0.0010462584944632245 0.0 0.07185119381743957 7.299477868348077E-5 58-59 7.299477868348077E-5 0.0010462584944632245 0.0 0.07851805027053083 7.299477868348077E-5 60-61 7.299477868348077E-5 0.0010584242909104711 0.0 0.08475910384796842 7.299477868348077E-5 62-63 9.732637157797436E-5 0.001070590087357718 0.0 0.09085416786803907 7.299477868348077E-5 64-65 9.732637157797436E-5 0.0012652428305136667 0.0 0.09617062091548592 7.299477868348077E-5 66-67 1.0949216802522115E-4 0.0013139060163026538 0.0 0.10192504263503366 7.299477868348077E-5 68-69 1.2165796447246795E-4 0.0013382376091971475 0.0 0.108153930416024 7.299477868348077E-5 70-71 1.2165796447246795E-4 0.0013504034056443944 0.0 0.1136650362066268 7.299477868348077E-5 72-73 1.2165796447246795E-4 0.001362569202091641 0.0 0.11858001797131451 9.732637157797436E-5 74-75 1.2165796447246795E-4 0.0014112323878806283 0.0 0.12276505194916741 9.732637157797436E-5 76-77 1.2165796447246795E-4 0.001545056148800343 0.0 0.12625663552952723 9.732637157797436E-5 78-79 1.2165796447246795E-4 0.0015815535381420833 0.0 0.12924942145554996 9.732637157797436E-5 80-81 1.2165796447246795E-4 0.0015937193345893302 0.0 0.13075798021500856 1.0949216802522115E-4 82-83 1.2165796447246795E-4 0.001618050927483824 0.0 0.13124461207289845 1.2165796447246795E-4 84-85 1.2165796447246795E-4 0.0016788799097200576 0.0 0.13165824915210483 1.2165796447246795E-4 86-87 1.2165796447246795E-4 0.0016788799097200576 0.0 0.13186506769170803 1.2165796447246795E-4 88-89 1.2165796447246795E-4 0.0018492010599815128 0.0 0.13192589667394425 1.2165796447246795E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4335 0.0 45.675117 1 GTATCAA 7465 0.0 35.40303 1 TCAACGC 8665 0.0 29.671852 4 ATCAACG 8780 0.0 29.37938 3 CAACGCA 8955 0.0 28.75775 5 TATCAAC 9280 0.0 28.296867 2 AACGCAG 9315 0.0 27.827625 6 ACGCAGA 10845 0.0 23.823881 7 CGCAGAG 10955 0.0 23.50759 8 GTACATG 11570 0.0 23.06108 1 TACATGG 11755 0.0 22.231255 2 ACATGGG 11820 0.0 21.144634 3 GAGTACT 6865 0.0 19.371384 12-13 GCAGAGT 13420 0.0 19.252607 9 CATGGGG 8710 0.0 18.418802 4 AGAGTAC 11635 0.0 17.543682 10-11 CAGAGTA 12785 0.0 17.451588 10-11 GTACTTT 7955 0.0 16.53186 14-15 AGTACTT 7785 0.0 15.861998 12-13 GTACCGT 410 1.9645086E-10 15.44536 6 >>END_MODULE