##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139991_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9728756 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43323874090377 34.0 31.0 34.0 31.0 34.0 2 32.629894819029275 34.0 31.0 34.0 31.0 34.0 3 32.72445140982054 34.0 31.0 34.0 31.0 34.0 4 36.20243030044129 37.0 37.0 37.0 35.0 37.0 5 36.0067596514909 37.0 35.0 37.0 35.0 37.0 6 36.06795832889632 37.0 35.0 37.0 35.0 37.0 7 36.05411935503368 37.0 35.0 37.0 35.0 37.0 8 36.05337897260451 37.0 35.0 37.0 35.0 37.0 9 37.936760568360434 39.0 38.0 39.0 35.0 39.0 10-11 37.786285317465044 39.0 38.0 39.0 35.0 39.0 12-13 37.793726196853946 39.0 38.0 39.0 35.0 39.0 14-15 39.15184233215429 40.0 39.0 41.0 36.0 41.0 16-17 39.10651207615855 40.0 39.0 41.0 36.0 41.0 18-19 39.13825082055712 40.0 39.0 41.0 36.0 41.0 20-21 39.14650727539778 40.0 39.0 41.0 36.0 41.0 22-23 39.078792018058664 40.0 39.0 41.0 36.0 41.0 24-25 39.102761339580425 40.0 39.0 41.0 36.0 41.0 26-27 38.99228425154759 40.0 39.0 41.0 35.5 41.0 28-29 38.90905941535318 40.0 38.0 41.0 35.0 41.0 30-31 38.816976450458625 40.0 38.0 41.0 35.0 41.0 32-33 38.74284521091969 40.0 38.0 41.0 35.0 41.0 34-35 38.69433954946223 40.0 38.0 41.0 35.0 41.0 36-37 38.67834588951183 40.0 38.0 41.0 35.0 41.0 38-39 38.58320962313875 40.0 38.0 41.0 35.0 41.0 40-41 38.575967532481904 40.0 38.0 41.0 35.0 41.0 42-43 38.53967597367118 40.0 38.0 41.0 34.5 41.0 44-45 38.446626300700984 40.0 38.0 41.0 34.0 41.0 46-47 38.379682145136776 40.0 38.0 41.0 34.0 41.0 48-49 38.37720353754945 40.0 38.0 41.0 34.0 41.0 50-51 38.27885970031987 40.0 38.0 41.0 34.0 41.0 52-53 38.10341330701804 40.0 37.0 41.0 33.5 41.0 54-55 37.921934732198196 40.0 37.0 41.0 33.0 41.0 56-57 37.78613879549212 39.0 37.0 41.0 33.0 41.0 58-59 37.62657396834302 39.0 36.0 41.0 33.0 41.0 60-61 37.43445975685303 39.0 36.0 41.0 32.5 41.0 62-63 37.27235010509588 39.0 35.0 40.0 32.0 41.0 64-65 37.070737842623636 38.5 35.0 40.0 32.0 41.0 66-67 36.78963001490645 38.0 35.0 40.0 32.0 41.0 68-69 36.54093081122086 37.0 35.0 40.0 32.0 41.0 70-71 36.24157163875524 37.0 35.0 39.5 31.5 41.0 72-73 35.93251524155569 36.0 35.0 39.0 31.0 41.0 74-75 35.49764765835211 36.0 34.0 39.0 31.0 40.0 76-77 33.58330933115586 34.5 32.0 36.5 28.0 39.0 78-79 34.658989675259406 35.0 34.0 37.0 30.0 39.0 80-81 34.63071105561221 35.0 34.0 37.0 31.0 39.0 82-83 34.397060066785414 35.0 34.0 36.0 31.0 38.5 84-85 34.14720764188414 35.0 34.0 36.0 30.0 37.0 86-87 33.926915164174154 35.0 34.0 35.5 30.0 37.0 88-89 33.78070150443365 35.0 34.0 35.0 30.0 36.5 90-91 33.705411836444185 35.0 34.0 35.0 30.0 36.0 92-93 33.5962411655812 35.0 34.0 35.0 30.0 36.0 94-95 33.50547918222051 35.0 34.0 35.0 30.0 36.0 96-97 33.4989035087438 35.0 33.5 35.0 30.0 35.0 98-99 33.619459005040724 35.0 34.0 35.0 30.5 35.0 100-101 32.36926609389276 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 14.0 20 41.0 21 201.0 22 785.0 23 2708.0 24 7140.0 25 14988.0 26 27885.0 27 45748.0 28 66898.0 29 92904.0 30 124797.0 31 162485.0 32 215826.0 33 295131.0 34 436041.0 35 681032.0 36 1248979.0 37 2350105.0 38 2777531.0 39 1157240.0 40 20272.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.04008775633802 20.279941238119243 13.892166686059348 24.787804319483396 2 14.491260444529969 20.826366544281434 41.900864878933604 22.781508132254995 3 18.325728042871678 25.803448211353686 30.37048732037011 25.50033642540453 4 12.524147600247105 18.13524095178086 38.14455359446422 31.196057853507813 5 13.35286854763343 37.548551942303824 35.676729892290446 13.421849617772303 6 30.143154993300275 37.70319658546272 18.654563851740143 13.49908456949686 7 26.551958039305617 32.24382340071211 22.836793584397565 18.367424975584708 8 24.192386539405618 37.1915917745746 21.2850911492061 17.33093053681369 9 25.154937684697416 16.83176153154311 20.99377617885134 37.019524604908135 10-11 24.212656789854684 26.60559096693495 28.8173815609236 20.36437068228677 12-13 24.92002431764406 23.88880120480163 28.852255613613213 22.338918863941096 14-15 22.110672571363725 25.467002345213448 26.042055548337544 26.380269535085283 16-17 22.173535921747597 28.7247191268207 26.718073547881176 22.38367140355053 18-19 22.194209619400464 27.866183507942843 28.028604068187136 21.911002804469554 20-21 22.78856534330002 27.052120298209136 27.979363528922903 22.179950829567943 22-23 22.427820579285797 27.3917983325762 27.780815569448187 22.39956551868982 24-25 22.394438680608182 27.473875083672738 27.961762973001598 22.169923262717482 26-27 22.46722113424933 27.650266051760397 27.804688655999772 22.0778241579905 28-29 21.950875317088958 27.42308870287103 28.034330757987806 22.59170522205221 30-31 22.581545688992076 27.14947328748267 28.190445234480144 22.078535789045105 32-33 22.15447751256562 27.73180228658297 27.884514781403297 22.229205419448114 34-35 22.132732553760032 27.73097250631412 28.275420780537548 21.8608741593883 36-37 22.521782222052337 27.462310314382687 27.80758649125992 22.208320972305057 38-39 22.174070433341402 27.310293164767973 28.1049886022803 22.410647799610324 40-41 22.300326385969292 27.150666491022825 28.198743058456017 22.350264064551865 42-43 22.41923832527879 27.16762418751926 28.13191899793173 22.281218489270216 44-45 22.23879226519319 27.47194304434899 27.90713969418932 22.3821249962685 46-47 22.62791327907361 27.180945347280925 27.412938740205178 22.778202633440284 48-49 22.483730873440074 27.2219035336236 27.624936050679878 22.669429542256452 50-51 22.229791278906728 27.465433452889588 27.728250022067375 22.57652524613631 52-53 22.383932352490746 27.504189273959323 27.814163700068672 22.297714673481263 54-55 22.321086213295455 27.463275872234526 27.539303283346232 22.676334631123783 56-57 22.653832603234044 27.658638745870668 27.20191392305213 22.485614727843164 58-59 22.229552564560436 27.91991185678655 27.646073343073162 22.20446223557985 60-61 22.607755317719974 28.098638845939234 27.079001137894736 22.21460469844606 62-63 22.38523391510487 28.28812003978513 27.04029944241224 22.28634660269776 64-65 22.350395133380676 28.06174760183288 27.166520973445362 22.421336291341085 66-67 22.531760579304734 27.84889920304491 27.093576415863517 22.52576380178684 68-69 22.497333098580196 27.689440594856784 27.270746131352873 22.542480175210144 70-71 22.49397520086776 27.467738366257432 27.311866023296016 22.726420409578797 72-73 22.536454308877317 27.505778570640626 27.300725183965756 22.657041936516293 74-75 22.437812005481575 27.63229459917787 27.26724280151524 22.66265059382532 76-77 22.53469221925978 27.622287868758665 27.1527700482936 22.690249863687953 78-79 22.49653868170813 27.629474004351827 27.15158384670361 22.722403467236436 80-81 22.48215587775743 27.645893046151777 27.197211068362424 22.674740007728364 82-83 22.586488744228234 27.570784559774648 27.290922833660225 22.551803862336893 84-85 22.664421858176947 27.554001629421016 27.185499890181603 22.596076622220433 86-87 22.495681417775586 27.568736837305625 27.282958730351144 22.652623014567652 88-89 22.564180060553404 27.522608432530376 27.225461449848794 22.687750057067426 90-91 22.54756661653241 27.54559662900158 27.282021921084727 22.624814833381286 92-93 22.603035082132365 27.529970586308828 27.265906741253904 22.601087590304907 94-95 22.45511199894113 27.605991814513718 27.265773967424895 22.673122219120252 96-97 22.494245461946726 27.638919651152154 27.28716146496743 22.57967342193369 98-99 22.72293982331312 28.162785176639648 27.408931446775735 21.70534355327149 100-101 26.9167585117499 35.24929808008346 27.935871010257763 9.898072397908876 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1296.0 1 1269.0 2 1883.5 3 2733.0 4 3941.5 5 6570.0 6 8611.5 7 9770.5 8 10247.0 9 9673.0 10 8700.5 11 7832.5 12 8563.5 13 11525.0 14 18112.0 15 26830.0 16 33599.0 17 37305.0 18 38153.5 19 37034.5 20 35441.5 21 34282.5 22 35211.5 23 40169.0 24 49660.0 25 63414.0 26 80875.5 27 99736.0 28 119424.0 29 139850.0 30 158195.5 31 176639.5 32 197287.0 33 218195.5 34 239843.5 35 261970.5 36 284812.5 37 305799.5 38 322911.0 39 338783.5 40 356407.0 41 373877.5 42 386815.0 43 398464.5 44 411759.0 45 426961.0 46 447691.5 47 471090.5 48 473104.5 49 461830.0 50 455520.0 51 442252.0 52 417502.5 53 386615.5 54 356563.5 55 328026.5 56 300213.5 57 269569.0 58 238197.0 59 206992.5 60 172783.5 61 140222.5 62 111903.5 63 87124.0 64 65725.5 65 48772.5 66 36306.0 67 27417.0 68 20765.5 69 14915.5 70 10594.5 71 7551.0 72 5184.5 73 3522.0 74 2371.5 75 1580.0 76 1047.5 77 711.0 78 511.5 79 373.5 80 277.0 81 195.5 82 137.0 83 93.0 84 66.0 85 48.5 86 32.0 87 24.0 88 18.0 89 12.5 90 9.0 91 6.0 92 3.5 93 2.0 94 1.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0047076933577119215 3 2.0557612915772582E-5 4 4.7282509706276935E-4 5 0.0 6 0.0 7 0.002292173840108643 8 9.456501941255387E-4 9 6.167283874731775E-5 10-11 9.764866134991977E-5 12-13 1.798791130130101E-4 14-15 4.1115225831545164E-5 16-17 3.340612098813044E-4 18-19 0.0 20-21 1.027916410865385E-4 22-23 0.0 24-25 0.0 26-27 5.760277118703214E-4 28-29 1.852775475675657E-4 30-31 3.0926532630043364E-5 32-33 0.001654159839811161 34-35 4.824668186039413E-4 36-37 0.001334947159297628 38-39 0.0038410424263365826 40-41 1.695673816793254E-4 42-43 8.338205749609776E-4 44-45 0.0017813708447568235 46-47 7.097098405909809E-5 48-49 2.5391983220977485E-4 50-51 2.008657088868904E-4 52-53 0.0 54-55 2.6774155215588346E-4 56-57 0.0017125373940035935 58-59 0.0031186726788913575 60-61 0.0011065208575927184 62-63 0.0010910757497324018 64-65 1.8224305111802164E-5 66-67 1.0477400924156068E-4 68-69 0.0 70-71 4.42836932321801E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 2.723051811302585E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 211.0 20-21 754.0 22-23 1593.0 24-25 3401.0 26-27 5404.0 28-29 10775.0 30-31 26621.0 32-33 32387.0 34-35 43641.0 36-37 68056.0 38-39 80525.0 40-41 79981.0 42-43 87906.0 44-45 102581.0 46-47 102170.0 48-49 98293.0 50-51 91636.0 52-53 90628.0 54-55 103264.0 56-57 110138.0 58-59 110385.0 60-61 112308.0 62-63 109086.0 64-65 111455.0 66-67 117108.0 68-69 100516.0 70-71 95592.0 72-73 90517.0 74-75 91840.0 76-77 90080.0 78-79 95454.0 80-81 96652.0 82-83 92114.0 84-85 91503.0 86-87 95574.0 88-89 100390.0 90-91 106400.0 92-93 110104.0 94-95 120776.0 96-97 183070.0 98-99 787811.0 100-101 5680056.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.4158124907827 #Duplication Level Percentage of deduplicated Percentage of total 1 89.78930046139921 76.69426051889423 2 7.109348776176076 12.145016039948624 3 1.737016045620907 4.451059105387087 4 0.6460219885477488 2.2072197215486833 5 0.2971369376673809 1.2690096475941197 6 0.14963235814638912 0.7668581667591368 7 0.08635881978348978 0.5163486130286301 8 0.05216038880848037 0.3564257591929184 9 0.03528992441767216 0.2712885810186402 >10 0.09623180439349607 1.1962847531593304 >50 0.001170321683652682 0.06386767209503517 >100 2.949180577780775E-4 0.040548260054576485 >500 3.725529775084322E-5 0.021813161319049475 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.0557612915772582E-5 0.0 3 0.0 0.0 0.0 2.0557612915772582E-5 1.0278806457886291E-5 4 0.0 2.0557612915772582E-5 0.0 2.0557612915772582E-5 1.0278806457886291E-5 5 0.0 2.0557612915772582E-5 0.0 2.0557612915772582E-5 1.0278806457886291E-5 6 6.167283874731775E-5 2.0557612915772582E-5 0.0 3.0836419373658875E-5 2.0557612915772582E-5 7 6.167283874731775E-5 2.0557612915772582E-5 0.0 3.0836419373658875E-5 2.0557612915772582E-5 8 6.167283874731775E-5 2.0557612915772582E-5 0.0 4.1115225831545164E-5 3.0836419373658875E-5 9 6.167283874731775E-5 5.139403228943145E-5 0.0 1.130668710367492E-4 3.0836419373658875E-5 10-11 6.681224197626088E-5 5.139403228943145E-5 0.0 1.3362448395252177E-4 3.0836419373658875E-5 12-13 7.195164520520403E-5 5.139403228943145E-5 0.0 1.7473970978406695E-4 4.1115225831545164E-5 14-15 7.195164520520403E-5 1.027880645788629E-4 0.0 1.8501851624195325E-4 5.139403228943145E-5 16-17 1.336244839525218E-4 1.027880645788629E-4 0.0 2.5697016144715727E-4 5.139403228943145E-5 18-19 1.336244839525218E-4 1.233456774946355E-4 0.0 3.289218066523613E-4 9.250925812097662E-5 20-21 1.336244839525218E-4 1.4390329041040806E-4 0.0 3.8031583894179277E-4 1.4390329041040806E-4 22-23 1.336244839525218E-4 1.4390329041040806E-4 0.0 4.368492744601674E-4 1.4390329041040806E-4 24-25 1.336244839525218E-4 1.6446090332618066E-4 0.0 4.574068873759399E-4 1.5418209686829436E-4 26-27 1.336244839525218E-4 1.7473970978406695E-4 0.0 4.8310390352065567E-4 1.5418209686829436E-4 28-29 1.3876388718146493E-4 1.7473970978406695E-4 0.0 6.527042100757795E-4 1.5932150009723752E-4 30-31 1.4390329041040806E-4 2.055761291577258E-4 0.0 0.0018296275495037597 1.6446090332618066E-4 32-33 1.4390329041040806E-4 2.158549356156121E-4 0.0 0.004296541099396469 1.696003065551238E-4 34-35 1.4390329041040806E-4 2.46691354989271E-4 0.0 0.00754978334331748 1.7473970978406695E-4 36-37 1.4390329041040806E-4 2.929459840497593E-4 0.0 0.012051900571871676 1.7473970978406695E-4 38-39 1.490426936393512E-4 3.135035969655319E-4 0.0 0.019062046576150127 1.8501851624195325E-4 40-41 1.5418209686829436E-4 3.289218066523613E-4 0.0 0.026658084548528097 1.8501851624195325E-4 42-43 1.5418209686829436E-4 3.6489762925496333E-4 0.0 0.033657951746348655 1.9015791947089638E-4 44-45 1.5932150009723752E-4 4.111522583154516E-4 0.0 0.041577772122150046 2.055761291577258E-4 46-47 1.6446090332618066E-4 4.317098712312242E-4 0.0 0.05010918148219567 2.055761291577258E-4 48-49 1.6446090332618066E-4 4.317098712312242E-4 0.0 0.058234577987154784 2.055761291577258E-4 50-51 1.9529732269983954E-4 4.625462906048831E-4 0.0 0.06653471420189797 2.055761291577258E-4 52-53 2.158549356156121E-4 4.625462906048831E-4 0.0 0.07460871667456764 2.055761291577258E-4 54-55 2.2099433884455524E-4 4.7796450029171256E-4 0.0 0.08227670629215081 2.055761291577258E-4 56-57 2.261337420734984E-4 5.036615164364282E-4 0.0 0.09036098757127839 2.2099433884455524E-4 58-59 2.261337420734984E-4 5.242191293522009E-4 0.0 0.09811634704375359 2.4155195176032784E-4 60-61 2.3127314530244157E-4 5.344979358100872E-4 0.0 0.10579461546779464 2.46691354989271E-4 62-63 2.5697016144715727E-4 5.499161454969165E-4 0.0 0.1131131256658097 2.518307582182141E-4 64-65 2.5697016144715727E-4 6.68122419762609E-4 0.0 0.12069888483172977 2.5697016144715727E-4 66-67 2.672489679050436E-4 6.732618229915521E-4 0.0 0.12796600099745536 2.5697016144715727E-4 68-69 2.672489679050436E-4 6.989588391362678E-4 0.0 0.13490933475975758 2.7238837113398675E-4 70-71 2.929459840497593E-4 7.040982423652109E-4 0.0 0.14107661863448934 2.8266717759187297E-4 72-73 3.597582260260202E-4 7.143770488230972E-4 0.0 0.1463239493312403 2.8780658082081613E-4 74-75 3.700370324839065E-4 7.297952585099267E-4 0.0 0.15079523014042084 3.032247905076456E-4 76-77 3.700370324839065E-4 7.452134681967561E-4 0.0 0.15480910406222542 3.1864300019447504E-4 78-79 3.700370324839065E-4 7.503528714256992E-4 0.0 0.15861226245164334 3.1864300019447504E-4 80-81 3.7517643571284966E-4 7.503528714256992E-4 0.0 0.1602003380493868 3.2378240342341815E-4 82-83 3.8031583894179277E-4 7.503528714256992E-4 0.0 0.1607348359851969 3.289218066523613E-4 84-85 3.8031583894179277E-4 7.606316778835855E-4 0.0 0.16136184317912794 3.340612098813045E-4 86-87 3.8031583894179277E-4 7.811892907993581E-4 0.0 0.16169590438900924 3.392006131102476E-4 88-89 3.8031583894179277E-4 8.017469037151307E-4 0.0 0.16181925006650388 3.4434001633919074E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 10555 0.0 41.241806 1 GGTATCA 9160 0.0 40.623444 1 GTATCAA 15775 0.0 33.999268 1 TATACAC 14415 0.0 32.735355 3 TTATACA 14695 0.0 30.868181 2 ATCAACG 18475 0.0 28.174467 3 TCAACGC 18560 0.0 28.000635 4 CAACGCA 18720 0.0 27.672333 5 AACGCAG 19345 0.0 26.971716 6 TATCAAC 19905 0.0 26.485792 2 TACACAT 19890 0.0 23.661661 5 ACACATC 18865 0.0 23.60295 6 ACATCTC 18905 0.0 23.31026 8 ACGCAGA 22750 0.0 22.825203 7 CGCAGAG 23110 0.0 22.522799 8 GTACATG 24570 0.0 21.050598 1 TACATGG 24285 0.0 20.681627 2 CACATCT 21310 0.0 20.504673 7 ATACACA 25285 0.0 20.142294 4 ACATGGG 24615 0.0 19.82915 3 >>END_MODULE