##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139988_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11745341 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4468504575559 33.0 31.0 34.0 31.0 34.0 2 32.642566273725045 34.0 31.0 34.0 31.0 34.0 3 32.73088427147411 34.0 31.0 34.0 31.0 34.0 4 36.16579850682922 37.0 37.0 37.0 35.0 37.0 5 36.009267674731625 37.0 35.0 37.0 35.0 37.0 6 36.03451649466797 37.0 35.0 37.0 35.0 37.0 7 36.05232023489143 37.0 35.0 37.0 35.0 37.0 8 36.038736380663615 37.0 35.0 37.0 35.0 37.0 9 37.8859586963035 39.0 38.0 39.0 35.0 39.0 10-11 37.76551247000832 39.0 37.5 39.0 35.0 39.0 12-13 37.79280444050113 39.0 38.0 39.0 35.0 39.0 14-15 39.09735328246323 40.0 38.5 41.0 36.0 41.0 16-17 39.066511478891925 40.0 38.0 41.0 36.0 41.0 18-19 39.10053492699787 40.0 38.5 41.0 36.0 41.0 20-21 39.14085607096777 40.0 39.0 41.0 36.0 41.0 22-23 39.10305459810073 40.0 39.0 41.0 36.0 41.0 24-25 39.09120701643543 40.0 39.0 41.0 36.0 41.0 26-27 38.99119383575173 40.0 39.0 41.0 35.5 41.0 28-29 38.91473646678178 40.0 38.0 41.0 35.0 41.0 30-31 38.79662951870484 40.0 38.0 41.0 35.0 41.0 32-33 38.733930321553075 40.0 38.0 41.0 35.0 41.0 34-35 38.67611633869086 40.0 38.0 41.0 35.0 41.0 36-37 38.61603892007256 40.0 38.0 41.0 35.0 41.0 38-39 38.542023920216636 40.0 38.0 41.0 35.0 41.0 40-41 38.521864476270196 40.0 38.0 41.0 34.5 41.0 42-43 38.46851997040391 40.0 38.0 41.0 34.0 41.0 44-45 38.44114378872441 40.0 38.0 41.0 34.0 41.0 46-47 38.3399699240122 40.0 38.0 41.0 34.0 41.0 48-49 38.33105818493141 40.0 38.0 41.0 34.0 41.0 50-51 38.27230611355802 40.0 38.0 41.0 34.0 41.0 52-53 38.10972732125221 40.0 37.0 41.0 33.5 41.0 54-55 37.97400257810399 40.0 37.0 41.0 33.0 41.0 56-57 37.799480547467965 39.5 37.0 41.0 33.0 41.0 58-59 37.58804987714669 39.0 36.0 41.0 33.0 41.0 60-61 37.43988774245394 39.0 36.0 41.0 33.0 41.0 62-63 37.27952650507717 39.0 35.5 40.0 32.5 41.0 64-65 37.01670976242664 38.5 35.0 40.0 32.0 41.0 66-67 36.816070959220966 38.0 35.0 40.0 32.0 41.0 68-69 36.53962847678626 37.5 35.0 40.0 31.5 41.0 70-71 36.21382325895742 37.0 35.0 39.5 31.0 41.0 72-73 35.95332490650269 36.5 35.0 39.0 31.0 41.0 74-75 35.59729971779008 36.0 34.0 39.0 31.0 40.0 76-77 33.56382313523034 34.5 32.0 36.5 28.0 39.0 78-79 34.7325442350746 35.0 34.0 37.0 30.5 39.0 80-81 34.70902137149885 35.0 34.0 37.0 31.0 39.0 82-83 34.460275896748996 35.0 34.0 36.5 31.0 39.0 84-85 34.18210290735736 35.0 34.0 36.0 30.0 37.0 86-87 33.950112800387075 35.0 34.0 36.0 30.0 37.0 88-89 33.738059359442005 35.0 34.0 35.0 30.0 36.5 90-91 33.675014013981695 35.0 34.0 35.0 30.0 36.0 92-93 33.587876404796525 35.0 34.0 35.0 30.0 36.0 94-95 33.501436974975505 35.0 33.5 35.0 30.0 36.0 96-97 33.50459632028646 35.0 33.0 35.0 30.0 35.5 98-99 33.56856392457379 35.0 33.0 35.0 30.0 35.0 100-101 32.293937278174184 34.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 5.0 19 16.0 20 53.0 21 261.0 22 956.0 23 3131.0 24 8044.0 25 17539.0 26 32894.0 27 53577.0 28 79967.0 29 112526.0 30 152578.0 31 200946.0 32 267456.0 33 369519.0 34 548466.0 35 859417.0 36 1556556.0 37 2866225.0 38 3287019.0 39 1302847.0 40 25342.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.90658236316851 20.37017912038484 13.955056732707888 23.76818178373876 2 14.646567461386798 21.181533708279876 41.91231080154763 22.25958802878569 3 18.610585950986348 26.147051173277013 30.07543148863419 25.166931387102448 4 12.493185562238049 17.887759707450215 39.0165737172957 30.602481013016035 5 13.062900951603016 38.17262319972203 35.600045260507166 13.164430588167782 6 29.92547570316868 38.04439342828027 18.886895750699196 13.143235117851852 7 26.700076225969088 32.5883088451838 23.13032886827211 17.581286060574996 8 24.25154559196168 37.36678331436694 21.14939561551996 17.232275478151415 9 25.70617692919525 16.823098220000773 21.276127290557252 36.19459756024672 10-11 24.19468954518256 26.986882564951177 28.91186794631786 19.90655994354841 12-13 24.921028173925837 24.49474378237883 29.170577441515473 21.413650602179864 14-15 21.95785681093213 25.900203978804186 26.78833933940428 25.3535998708594 16-17 21.564414583218838 29.06457560514979 27.4731765985093 21.897833213122073 18-19 21.56156215473012 28.34273606871014 29.10131770546296 20.994384071096786 20-21 22.42144528566988 27.472466141269962 28.975467060051496 21.130621513008666 22-23 22.128815762858377 27.40885015026395 28.81794272560636 21.64439136127131 24-25 21.83049471445521 27.49764258139966 28.940740907612227 21.731121796532896 26-27 21.804385362845142 27.68050216197409 28.813938333052942 21.70117414212782 28-29 21.65522292332454 27.849402568602244 28.861620193622468 21.633754314450748 30-31 21.95528091352426 27.6728582781466 28.790291181652407 21.58156962667674 32-33 21.770010382467085 27.81163575717556 28.686691512016516 21.73166234834084 34-35 21.865094418696813 27.876778125407853 28.71847075345904 21.53965670243629 36-37 21.861863601543664 27.79281523002819 28.6806441696266 21.664676998801543 38-39 21.748091741465334 27.90153201171307 28.760210396656987 21.590165850164606 40-41 21.92753072994658 27.74941799914566 28.655584252485365 21.667467018422393 42-43 21.863678830668245 27.827787767547452 28.47631695292357 21.83221644886073 44-45 21.90153483078982 27.99669374456525 28.300366794652515 21.801404629992412 46-47 21.982619905015866 27.940479839996478 28.06844944076418 22.008450814223472 48-49 21.970196468233418 28.013773545034965 28.04423278714989 21.971797199581726 50-51 21.9496899202694 28.1287073891908 27.940164664339783 21.981438026200017 52-53 22.066114503625656 28.08838039617626 27.822650277265726 22.022854822932363 54-55 22.065593378108847 28.006263724329006 27.85042573095817 22.077717166603975 56-57 22.10774393343248 28.069419605037744 27.797859522957886 22.024976938571886 58-59 22.03938829352767 28.09255451198563 27.86753573704548 22.00052145744122 60-61 22.12346082727604 28.09216937470892 27.81651700832932 21.96785278968572 62-63 22.116282656494555 28.09178615876998 27.754728019673426 22.037203165062042 64-65 22.055746436763894 28.0673016758345 27.752646958946087 22.12430492845552 66-67 22.14001459842883 28.081249337143987 27.66109641508655 22.117639649340628 68-69 22.080710326976703 28.09403271269006 27.68709666114279 22.138160299190442 70-71 22.121653832388787 27.877751116682703 27.754314764925258 22.246280286003252 72-73 22.11569812626514 27.940303210309654 27.769902216360197 22.17409644706501 74-75 22.052149078238532 28.062560707272837 27.6720249338884 22.213265280600233 76-77 22.09299688835898 28.020108227940945 27.631358650759523 22.255536232940557 78-79 22.094485372528798 28.00042507335217 27.606119742485223 22.29896981163381 80-81 22.06747483527785 28.06099278212999 27.6376835627094 22.23384881988276 82-83 22.152801399537687 27.994039062462665 27.71512852626718 22.13803101173247 84-85 22.24751357248821 27.991379479509256 27.60007781070704 22.1610291372955 86-87 22.062701691691935 28.02620321028227 27.693178525829282 22.217916572196515 88-89 22.130419692115446 27.982600256744334 27.651048758021147 22.235931293119076 90-91 22.168323103710737 27.98353697637384 27.685050017970187 22.16308990194524 92-93 22.164312297104104 28.008323791155398 27.641791498950237 22.18557241279026 94-95 22.026894115890393 28.05533333471043 27.70565494098008 22.2121176084191 96-97 22.045391690416903 28.07364073786569 27.730876917443037 22.150090654274372 98-99 22.249980451167016 28.668263321777797 27.78574002859142 21.296016198463764 100-101 22.985473569305913 31.286675387114794 24.846910711459394 20.8809403321199 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3239.0 1 2731.5 2 3224.5 3 4497.5 4 6165.5 5 9979.0 6 13099.5 7 15282.5 8 16694.5 9 16206.5 10 14579.0 11 13113.5 12 14268.5 13 19110.5 14 30186.0 15 44487.0 16 55221.0 17 60796.5 18 61595.5 19 58743.0 20 54464.5 21 51060.0 22 51196.0 23 57483.0 24 69534.5 25 86456.0 26 108636.5 27 133906.0 28 161025.5 29 188606.5 30 214118.0 31 240062.0 32 266699.0 33 291035.5 34 315545.0 35 341580.0 36 367675.0 37 389873.5 38 407204.5 39 422956.5 40 438629.0 41 453116.5 42 463243.0 43 472910.5 44 483070.0 45 492739.0 46 499537.5 47 503210.0 48 503481.0 49 496555.5 50 485919.5 51 468979.5 52 445613.5 53 420723.5 54 393200.0 55 361232.0 56 328865.5 57 295045.5 58 259180.5 59 223800.0 60 188490.5 61 154638.5 62 123170.5 63 95836.0 64 71529.5 65 52006.5 66 38196.5 67 28403.5 68 21053.5 69 14883.5 70 10423.5 71 7435.0 72 5270.5 73 3663.5 74 2530.0 75 1712.0 76 1178.5 77 819.0 78 559.5 79 380.5 80 274.0 81 194.5 82 142.0 83 96.5 84 61.5 85 41.0 86 31.5 87 25.5 88 20.0 89 15.5 90 9.0 91 4.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.5 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0017028028390150612 3 0.0020944474919885256 4 4.938128233143678E-4 5 1.7028028390150616E-5 6 3.746166245833135E-4 7 0.0 8 2.554204258522592E-5 9 4.6827078072914183E-4 10-11 4.8529880911929246E-4 12-13 1.1068218453597898E-4 14-15 2.554204258522592E-5 16-17 3.9590166007100175E-4 18-19 0.0 20-21 5.10859641398669E-5 22-23 4.2575530054705296E-6 24-25 0.0 26-27 6.816272777693781E-5 28-29 2.557810241600098E-4 30-31 5.933448393853938E-4 32-33 3.123630603552612E-4 34-35 8.454751286967649E-4 36-37 9.913846518569605E-5 38-39 9.976905199576928E-5 40-41 3.2768365926352094E-4 42-43 0.0012546056131847517 44-45 3.819883943930678E-4 46-47 1.3016427314766252E-4 48-49 3.763745095057917E-4 50-51 0.0 52-53 4.4811728143968904E-4 54-55 6.75869838655886E-4 56-57 6.447745470494105E-4 58-59 6.228163689644042E-4 60-61 6.820653977752563E-4 62-63 1.0188144958090824E-4 64-65 6.663255014773073E-4 66-67 0.002450836103974667 68-69 0.0012115664342428325 70-71 2.2789132561548128E-4 72-73 0.0 74-75 4.1427348212138053E-5 76-77 1.0473907114563753E-5 78-79 8.687864420154447E-4 80-81 2.037972577684565E-4 82-83 1.2489650559669387E-4 84-85 8.739611679814927E-4 86-87 2.6156616357846997E-4 88-89 5.639014219112695E-6 90-91 3.431606537484982E-5 92-93 9.291492349559415E-5 94-95 5.606720983005734E-4 96-97 6.016144202644914E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 266.0 20-21 861.0 22-23 2016.0 24-25 4250.0 26-27 6552.0 28-29 11954.0 30-31 26963.0 32-33 32418.0 34-35 44471.0 36-37 68342.0 38-39 82798.0 40-41 83603.0 42-43 96276.0 44-45 115176.0 46-47 115816.0 48-49 108093.0 50-51 99080.0 52-53 94378.0 54-55 101864.0 56-57 106698.0 58-59 107215.0 60-61 105161.0 62-63 100201.0 64-65 104867.0 66-67 110641.0 68-69 113878.0 70-71 112252.0 72-73 107111.0 74-75 108446.0 76-77 106941.0 78-79 114533.0 80-81 116501.0 82-83 111552.0 84-85 111318.0 86-87 115644.0 88-89 122921.0 90-91 131100.0 92-93 135419.0 94-95 150962.0 96-97 232302.0 98-99 981205.0 100-101 7143296.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.57101735660216 #Duplication Level Percentage of deduplicated Percentage of total 1 89.85505313145397 76.88988311090057 2 7.150411177565903 12.237359179646678 3 1.709139902179253 4.387585207027264 4 0.6188508561335664 2.11822789405414 5 0.2753529792894466 1.1781117284984672 6 0.144048399646862 0.7395820863823436 7 0.07571825068381592 0.45355014204334554 8 0.0440067650491097 0.3012562924660223 9 0.03065717052431349 0.23610287439363073 >10 0.09394630327156925 1.2284202057863611 >50 0.0023019185001330353 0.13016330481342323 >100 4.5067176471547E-4 0.05387973911634676 >500 4.68589699866237E-5 0.02742546979787409 >1k 1.5614967287177324E-5 0.01845276507357033 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.514014195075306E-6 0.0 0.0 0.0 8.514014195075306E-6 2 8.514014195075306E-6 0.0 0.0 0.0 8.514014195075306E-6 3 8.514014195075306E-6 0.0 0.0 0.0 8.514014195075306E-6 4 8.514014195075306E-6 8.514014195075306E-6 0.0 0.0 1.7028028390150613E-5 5 8.514014195075306E-6 8.514014195075306E-6 0.0 8.514014195075306E-6 1.7028028390150613E-5 6 8.514014195075306E-6 8.514014195075306E-6 0.0 8.514014195075306E-6 1.7028028390150613E-5 7 8.514014195075306E-6 8.514014195075306E-6 0.0 1.7028028390150613E-5 1.7028028390150613E-5 8 8.514014195075306E-6 8.514014195075306E-6 0.0 3.4056056780301226E-5 2.554204258522592E-5 9 8.514014195075306E-6 3.4056056780301226E-5 0.0 5.108408517045184E-5 4.257007097537654E-5 10-11 5.108408517045184E-5 3.4056056780301226E-5 0.0 1.0642517743844134E-4 5.108408517045184E-5 12-13 5.9598099365527146E-5 3.4056056780301226E-5 0.0 1.1919619873105429E-4 5.108408517045184E-5 14-15 6.38551064630648E-5 9.791116324336603E-5 0.0 1.1919619873105429E-4 8.514014195075306E-5 16-17 7.23691206581401E-5 1.0216817034090368E-4 0.0 1.362242271212049E-4 9.365415614582837E-5 18-19 7.662612775567776E-5 1.0642517743844134E-4 0.0 1.4899524841381786E-4 1.0642517743844134E-4 20-21 7.662612775567776E-5 1.1919619873105429E-4 0.0 2.0007933358426972E-4 1.2345320582859195E-4 22-23 8.939714904829073E-5 1.4899524841381786E-4 0.0 2.1710736197442035E-4 1.362242271212049E-4 24-25 1.4048123421874257E-4 1.575092626088932E-4 0.0 2.469064116571839E-4 1.5325225551135552E-4 26-27 1.745372909990438E-4 1.6176626970643084E-4 0.0 2.8096246843748514E-4 1.6176626970643084E-4 28-29 1.7879429809658143E-4 1.6602327680396848E-4 0.0 5.53410922679895E-4 1.6176626970643084E-4 30-31 1.7879429809658143E-4 1.9156531938919439E-4 0.0 0.0015367795622110928 1.6176626970643084E-4 32-33 1.7879429809658143E-4 2.0433634068180737E-4 0.0 0.0035631149406390155 1.7879429809658143E-4 34-35 2.0007933358426972E-4 2.639344400473345E-4 0.0 0.0059172398655773385 1.7879429809658143E-4 36-37 2.21364369071958E-4 3.2353253941286167E-4 0.0 0.00994436857984796 1.7879429809658143E-4 38-39 2.21364369071958E-4 3.490745819980876E-4 0.0 0.016206426020325845 1.830513051941191E-4 40-41 2.469064116571839E-4 3.661026103882382E-4 0.0 0.023226230724165436 1.9582232648673206E-4 42-43 2.469064116571839E-4 3.7887363168085113E-4 0.0 0.02968411049113006 1.9582232648673206E-4 44-45 2.639344400473345E-4 4.2144370265622766E-4 0.0 0.03700190569179729 1.9582232648673206E-4 46-47 2.8096246843748514E-4 4.5124275233899126E-4 0.0 0.044664518467365064 2.0433634068180737E-4 48-49 2.8096246843748514E-4 4.5975676653406655E-4 0.0 0.052476126491346656 2.469064116571839E-4 50-51 2.8096246843748514E-4 5.363828942897443E-4 0.0 0.06018982335208488 2.554204258522592E-4 52-53 2.9799049682763577E-4 5.448969084848196E-4 0.0 0.06779283802828713 2.596774329497968E-4 54-55 2.9799049682763577E-4 5.491539155823573E-4 0.0 0.07499995104441838 2.639344400473345E-4 56-57 2.9799049682763577E-4 5.704389510700456E-4 0.0 0.08196441465598997 2.9373348973009807E-4 58-59 3.0650451102271105E-4 5.746959581675832E-4 0.0 0.08842655143005214 3.277895465103993E-4 60-61 3.2353253941286167E-4 5.832099723626585E-4 0.0 0.09473543594860294 3.405605678030123E-4 62-63 3.2353253941286167E-4 6.002380007528092E-4 0.0 0.1006782178567655 3.490745819980876E-4 64-65 3.2353253941286167E-4 7.151771923863257E-4 0.0 0.10656140166556255 3.490745819980876E-4 66-67 3.2353253941286167E-4 7.236912065814011E-4 0.0 0.11269149188601676 3.490745819980876E-4 68-69 3.2353253941286167E-4 7.49233249166627E-4 0.0 0.11908551654651832 3.533315890956252E-4 70-71 3.277895465103993E-4 7.577472633617023E-4 0.0 0.12532628895150852 3.661026103882382E-4 72-73 3.3204655360793696E-4 7.577472633617023E-4 0.0 0.13019204806399404 4.3421472394884064E-4 74-75 3.3204655360793696E-4 7.747752917518528E-4 0.0 0.13420214874987452 4.5124275233899126E-4 76-77 3.3204655360793696E-4 8.045743414346164E-4 0.0 0.13766309552017264 4.5124275233899126E-4 78-79 3.3204655360793696E-4 8.173453627272295E-4 0.0 0.14083882281493573 4.5124275233899126E-4 80-81 3.3204655360793696E-4 8.173453627272295E-4 0.0 0.14241817244812222 4.7678479492421717E-4 82-83 3.3204655360793696E-4 8.216023698247671E-4 0.0 0.14295881234950947 5.193548658995938E-4 84-85 3.4056056780301224E-4 8.258593769223048E-4 0.0 0.14346965320121402 5.193548658995938E-4 86-87 3.490745819980876E-4 8.514014195075307E-4 0.0 0.14370804559867612 5.236118729971314E-4 88-89 3.490745819980876E-4 9.109995188730578E-4 0.0 0.14375912968384655 5.321258871922067E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14065 0.0 47.66189 1 GTATCAA 24390 0.0 35.154705 1 TCAACGC 29255 0.0 28.41085 4 ATCAACG 29265 0.0 28.358242 3 CAACGCA 29715 0.0 27.942436 5 TATCAAC 31195 0.0 27.133186 2 AACGCAG 30990 0.0 26.874868 6 ACGCAGA 36070 0.0 23.089788 7 CGCAGAG 36645 0.0 22.739033 8 GTACATG 40245 0.0 21.578499 1 TACATGG 39565 0.0 21.264786 2 ACATGGG 40170 0.0 20.343735 3 GTGGTAT 7080 0.0 19.964985 1 TGGTATC 6735 0.0 19.228245 2 GCAGAGT 44190 0.0 18.789534 9 GAGTACT 22795 0.0 17.803833 12-13 AGAGTAC 39460 0.0 17.62592 10-11 CATGGGG 26695 0.0 17.565184 4 CAGAGTA 43120 0.0 17.194696 10-11 AGTACTT 25555 0.0 15.392461 12-13 >>END_MODULE