##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139987_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10708560 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.93078658568472 31.0 31.0 34.0 30.0 34.0 2 32.161437298759125 33.0 31.0 34.0 30.0 34.0 3 32.25228079218868 34.0 31.0 34.0 30.0 34.0 4 35.857156797926145 37.0 35.0 37.0 35.0 37.0 5 35.518772178518866 37.0 35.0 37.0 33.0 37.0 6 35.51413224560538 37.0 35.0 37.0 33.0 37.0 7 35.53030024578468 37.0 35.0 37.0 33.0 37.0 8 35.49626541757248 37.0 35.0 37.0 33.0 37.0 9 37.28508165430273 39.0 37.0 39.0 34.0 39.0 10-11 37.090267692388146 39.0 37.0 39.0 33.0 39.0 12-13 37.12982562548092 39.0 37.0 39.0 33.0 39.0 14-15 38.27627421427344 40.0 38.0 41.0 34.0 41.0 16-17 38.2018621551357 40.0 38.0 41.0 33.5 41.0 18-19 38.22519400367557 40.0 38.0 41.0 33.5 41.0 20-21 38.260690361697044 40.0 38.0 41.0 34.0 41.0 22-23 38.206633177252385 40.0 38.0 41.0 34.0 41.0 24-25 38.17775372094715 40.0 38.0 41.0 34.0 41.0 26-27 38.04687462556769 40.0 37.5 41.0 33.5 41.0 28-29 37.94625409173526 40.0 37.0 41.0 33.0 41.0 30-31 37.805281901797414 39.0 37.0 40.5 33.0 41.0 32-33 37.72665090392941 39.0 37.0 40.0 33.0 41.0 34-35 37.64612425787321 39.0 37.0 40.0 33.0 41.0 36-37 37.56978218990635 39.0 37.0 40.0 33.0 41.0 38-39 37.474658202711915 39.0 37.0 40.0 32.5 41.0 40-41 37.44197622321491 39.0 37.0 40.0 32.0 41.0 42-43 37.37732058706768 39.0 36.0 40.0 32.0 41.0 44-45 37.3230214523252 39.0 36.0 40.0 32.0 41.0 46-47 37.212945446750396 39.0 36.0 40.0 31.5 41.0 48-49 37.19088618586656 39.0 36.0 40.0 31.0 41.0 50-51 37.1066804088737 39.0 36.0 40.0 31.0 41.0 52-53 36.902959084714766 39.0 35.5 40.0 31.0 41.0 54-55 36.7269233153599 38.5 35.0 40.0 31.0 41.0 56-57 36.545286880796034 38.0 35.0 40.0 30.0 41.0 58-59 36.31604353224971 38.0 35.0 40.0 30.0 41.0 60-61 36.14227201999521 38.0 34.0 40.0 30.0 41.0 62-63 35.98190874636026 38.0 34.0 40.0 29.5 41.0 64-65 35.71156785354205 37.0 34.0 40.0 29.0 41.0 66-67 35.51861888193435 37.0 34.0 39.0 29.0 41.0 68-69 35.2471661680551 36.0 34.0 39.0 29.0 40.0 70-71 34.9402018590914 36.0 33.5 39.0 29.0 40.0 72-73 34.70379582671271 35.5 33.0 38.5 29.0 40.0 74-75 34.3573952862002 35.0 33.0 37.5 28.5 39.5 76-77 32.30156775105718 33.5 30.0 35.5 25.5 38.5 78-79 33.57883806812458 35.0 32.0 36.0 28.0 39.0 80-81 33.62541752426177 35.0 33.0 36.0 29.0 39.0 82-83 33.40806122629144 35.0 32.5 36.0 28.5 37.5 84-85 33.14248556097897 34.5 32.0 35.5 28.0 37.0 86-87 32.91047894858524 34.0 32.0 35.0 27.0 37.0 88-89 32.709122461614115 34.0 32.0 35.0 27.0 36.0 90-91 32.68721552749635 34.0 32.0 35.0 27.0 36.0 92-93 32.61996307340764 34.0 32.0 35.0 27.0 36.0 94-95 32.54846612907218 34.0 32.0 35.0 27.0 35.0 96-97 32.61176044765948 34.0 32.0 35.0 28.0 35.0 98-99 32.77185070509472 34.0 32.0 35.0 29.0 35.0 100-101 31.54009298767111 33.0 29.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 6.0 19 37.0 20 135.0 21 544.0 22 1957.0 23 6074.0 24 15227.0 25 31288.0 26 56141.0 27 90264.0 28 133791.0 29 184935.0 30 246364.0 31 325251.0 32 430451.0 33 586264.0 34 834939.0 35 1231060.0 36 1860516.0 37 2411390.0 38 1820069.0 39 438715.0 40 3142.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43291908529251 20.590163383312042 14.004459983415138 23.97245754798031 2 14.947486262232879 21.226853295850113 41.430728072708284 22.394932369208725 3 18.78985763173785 25.870450054938043 30.131384388331206 25.208307924992894 4 12.914857477597058 17.97997054123317 38.42215647399498 30.683015507174797 5 13.26653754253957 37.88327635865853 35.630863125468146 13.21932297333376 6 30.373773476404487 38.004063680894035 18.433960703059004 13.18820213964248 7 26.861352039863434 32.257941310503 22.94060079039572 17.940105859237843 8 24.281478821096066 37.52176880601186 20.971714489636653 17.22503788325542 9 25.390158993974797 16.842786570206396 21.001849088562107 36.7652053472567 10-11 24.372450887049634 26.766501335457253 28.799245496885213 20.061802280607903 12-13 25.01190053686538 24.06381237124483 29.03386877617097 21.890418315718826 14-15 22.066524833059916 25.604176846414656 26.334854157527754 25.994444162997677 16-17 21.95309549663427 28.87094430567649 26.993155172458877 22.18280502523037 18-19 22.033023114218906 28.141262690781954 28.41525844744765 21.41045574755149 20-21 22.63217164463765 27.332525180682165 28.35271011692656 21.68259305775362 22-23 22.35695239691052 27.334221291579965 28.23520890345563 22.073617408053895 24-25 22.18357261712642 27.40562766257456 28.346925445039457 22.063874275259565 26-27 22.206384149851623 27.51861569359027 28.259182273173238 22.015817883384866 28-29 22.053278190001215 27.604182815728574 28.30619028237668 22.036348711893535 30-31 22.393745722057666 27.420471360531053 28.11672769216664 22.06905522524464 32-33 22.24938804179474 27.568213926606305 28.185816645732388 21.996581385866566 34-35 22.285759634485146 27.70414273723205 28.166573185789257 21.843524442493546 36-37 22.263984662788424 27.523757597950784 28.134270666128685 22.077987073132107 38-39 22.162595313355656 27.610635784065902 28.24568554297635 21.981083359602096 40-41 22.364246168018493 27.49372882484372 28.159498806516158 21.98252620062163 42-43 22.295379106937943 27.531954395525915 28.028081820905964 22.144584676630174 44-45 22.269209267379512 27.716534738768424 27.871119614159408 22.143136379692663 46-47 22.456119013549404 27.548060547020885 27.615529897887715 22.380290541541996 48-49 22.414157029212358 27.623220357522914 27.66765501308233 22.294967600182396 50-51 22.273671749583745 27.78001410102251 27.644883032391316 22.301431117002426 52-53 22.428243770022828 27.724271581176684 27.596310025605852 22.25117462319464 54-55 22.39368384818843 27.64824659652001 27.5554768148354 22.40259274045616 56-57 22.501865898498693 27.828153337847105 27.41413741554727 22.255843348106932 58-59 22.3565138538046 27.94136152136729 27.544663271023772 22.157461353804344 60-61 22.487541834113735 28.00087656766501 27.339146059648762 22.17243553857249 62-63 22.41789735873537 28.03783927165439 27.331418833853572 22.212844535756666 64-65 22.358127315531473 27.96015247926537 27.372471534486547 22.30924867071661 66-67 22.45915191231182 27.8905930819747 27.282967905020232 22.367287100693247 68-69 22.4005351833337 27.84763354391374 27.389093548167182 22.362737724585376 70-71 22.427464373354784 27.610601978988914 27.41287117302701 22.5490624746293 72-73 22.444110790509335 27.684664039905616 27.406625265215723 22.464599904369326 74-75 22.319586063087836 27.84695748025961 27.367644022700212 22.465812433952344 76-77 22.409668283967374 27.818181591070058 27.2837762599394 22.488373865023163 78-79 22.41460477768025 27.816259073711585 27.22880294329807 22.540333205310095 80-81 22.37511259548818 27.834308037074084 27.31401457498313 22.476564792454603 82-83 22.480956066010492 27.73832647941682 27.39173700742823 22.38898044714446 84-85 22.53630499739501 27.757524032507696 27.314938093777013 22.391232876320277 86-87 22.316256984816416 27.80574224996591 27.40733486453394 22.470665900683738 88-89 22.4079818521181 27.780968708581177 27.335777178483323 22.475272260817402 90-91 22.398393199854482 27.81257400781678 27.389606400561657 22.39942639176708 92-93 22.41337778423291 27.80335233832461 27.373806555990406 22.409463321452073 94-95 22.232283471178686 27.897009929438628 27.42043873074018 22.450267868642506 96-97 22.214105267227133 27.917132567821216 27.494723611504234 22.374038553447413 98-99 22.435177224911556 28.554045341486695 27.520487587573733 21.490289846028016 100-101 23.25541169160495 31.159516252468038 24.533969565457298 21.051102490469713 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1404.0 1 1313.0 2 2104.0 3 3190.0 4 4449.5 5 7271.0 6 9613.5 7 11314.5 8 12451.0 9 12037.5 10 10673.0 11 9447.5 12 10051.5 13 13331.5 14 21364.5 15 32155.0 16 40469.0 17 45105.0 18 46282.0 19 44732.5 20 42117.0 21 40144.5 22 40831.5 23 46401.5 24 57127.5 25 72600.0 26 92748.5 27 114457.5 28 136261.0 29 158828.5 30 179106.5 31 199130.5 32 221919.5 33 244110.0 34 265963.5 35 287599.0 36 310805.5 37 332025.0 38 348911.5 39 365157.5 40 382646.5 41 399263.5 42 411438.5 43 423253.5 44 436623.0 45 447935.0 46 455311.5 47 463224.5 48 472137.5 49 471746.5 50 462117.0 51 449498.5 52 428975.5 53 402052.5 54 374888.5 55 346563.5 56 317167.5 57 285624.0 58 253111.0 59 220428.0 60 185036.0 61 151118.0 62 121362.5 63 94846.5 64 71617.0 65 53482.5 66 40072.0 67 30440.0 68 23362.0 69 17260.5 70 12612.5 71 9230.5 72 6665.5 73 4679.0 74 3299.5 75 2404.5 76 1652.0 77 1114.0 78 790.5 79 557.0 80 409.0 81 301.0 82 219.5 83 161.0 84 121.0 85 84.0 86 54.0 87 37.5 88 26.5 89 18.5 90 12.5 91 7.5 92 4.5 93 3.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0011579521429585305 3 0.0012513353802938957 4 3.0816468320670566E-4 5 9.338323733536536E-6 6 3.9220959680853453E-4 7 0.0 8 2.8014971200609602E-5 9 3.8287127307499796E-4 10-11 5.182769672112777E-4 12-13 8.871407546859709E-5 14-15 2.3345809333841337E-5 16-17 3.3617965440731526E-4 18-19 0.0 20-21 3.735537225585684E-5 22-23 1.8680090054846146E-5 24-25 0.0 26-27 6.075385533450863E-5 28-29 2.33832023772673E-4 30-31 6.133884340319703E-4 32-33 3.190571223919074E-4 34-35 9.408370165926486E-4 36-37 1.085909358201602E-4 38-39 9.967958235584053E-5 40-41 2.0059314437586494E-4 42-43 0.0012114944866183945 44-45 3.197595873008352E-4 46-47 1.4665103301476494E-4 48-49 3.896031201785073E-4 50-51 0.0 52-53 3.7609062520402916E-4 54-55 6.117873833565416E-4 56-57 6.225150741770083E-4 58-59 5.771247336595119E-4 60-61 5.517556996493904E-4 62-63 4.732956845898659E-5 64-65 5.739142578475601E-4 66-67 0.002181325298032971 68-69 0.0010212488754718998 70-71 1.867609758326903E-4 72-73 0.0 74-75 3.368881962966667E-5 76-77 5.67779372291515E-6 78-79 9.014561445030754E-4 80-81 1.6276037882245658E-4 82-83 4.710053798234483E-5 84-85 7.333747083866645E-4 86-87 1.7520348676688065E-4 88-89 1.2255787351304362E-5 90-91 6.224047278858978E-6 92-93 5.0672631679959254E-5 94-95 3.294170809732376E-4 96-97 1.98584397740189E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 378.0 20-21 1125.0 22-23 2409.0 24-25 4437.0 26-27 6394.0 28-29 10609.0 30-31 21014.0 32-33 25637.0 34-35 34390.0 36-37 52382.0 38-39 64620.0 40-41 66824.0 42-43 76099.0 44-45 90699.0 46-47 91170.0 48-49 87225.0 50-51 82252.0 52-53 80294.0 54-55 88121.0 56-57 94873.0 58-59 97073.0 60-61 98872.0 62-63 98268.0 64-65 100350.0 66-67 103629.0 68-69 101162.0 70-71 101528.0 72-73 97225.0 74-75 100182.0 76-77 95471.0 78-79 104936.0 80-81 109723.0 82-83 106452.0 84-85 108368.0 86-87 114750.0 88-89 123062.0 90-91 137205.0 92-93 147534.0 94-95 173938.0 96-97 269820.0 98-99 966970.0 100-101 6371090.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.0491240295843 #Duplication Level Percentage of deduplicated Percentage of total 1 89.69047487284755 76.28096321733126 2 7.0806012512646745 12.043978680456783 3 1.7962175054138108 4.5830017620614925 4 0.6697978805715761 2.278628920779387 5 0.31893703065254014 1.356265753879761 6 0.15673078775900048 0.7997889724421812 7 0.09237835669242617 0.5499688821188332 8 0.05541478962568704 0.3770383452758704 9 0.032804999650624014 0.25110328356687533 >10 0.10475885139449065 1.3151386848200683 >50 0.0015554547829081033 0.08834394538534159 >100 2.5848375268918675E-4 0.03739331499357217 >500 6.973559197881998E-5 0.0383862368885476 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.338323733536536E-6 2 0.0 4.669161866768267E-5 0.0 0.0 9.338323733536536E-6 3 0.0 4.669161866768267E-5 0.0 9.338323733536536E-6 9.338323733536536E-6 4 0.0 7.470658986829229E-5 0.0 9.338323733536536E-6 9.338323733536536E-6 5 0.0 7.470658986829229E-5 0.0 9.338323733536536E-6 9.338323733536536E-6 6 0.0 7.470658986829229E-5 0.0 9.338323733536536E-6 1.867664746707307E-5 7 0.0 7.470658986829229E-5 0.0 3.735329493414614E-5 1.867664746707307E-5 8 0.0 9.338323733536535E-5 0.0 3.735329493414614E-5 1.867664746707307E-5 9 0.0 1.4007485600304803E-4 0.0 7.470658986829229E-5 1.867664746707307E-5 10-11 0.0 1.4007485600304803E-4 0.0 1.0739072293567016E-4 1.867664746707307E-5 12-13 0.0 1.4007485600304803E-4 0.0 1.1205988480243842E-4 2.334580933384134E-5 14-15 0.0 1.7742815093719415E-4 0.0 1.1205988480243842E-4 2.8014971200609605E-5 16-17 0.0 1.867664746707307E-4 0.0 1.1205988480243842E-4 2.8014971200609605E-5 18-19 0.0 1.9610479840426724E-4 0.0 1.3540569413627977E-4 2.8014971200609605E-5 20-21 0.0 2.0544312213780378E-4 0.0 1.5408234160335283E-4 2.8014971200609605E-5 22-23 0.0 2.4279641707194993E-4 0.0 1.587515034701211E-4 4.202245680091441E-5 24-25 0.0 2.7081138827255954E-4 0.0 1.7742815093719418E-4 5.602994240121921E-5 26-27 0.0 2.7081138827255954E-4 0.0 2.1478144587134033E-4 6.536826613475574E-5 28-29 0.0 2.8948803573963257E-4 0.0 5.322844528115826E-4 6.536826613475574E-5 30-31 0.0 3.5485630187438835E-4 0.0 0.00142876353123109 7.003742800152401E-5 32-33 0.0 3.6419462560792487E-4 0.0 0.0033524582203396163 8.404491360182882E-5 34-35 9.338323733536536E-6 4.2489372987591234E-4 0.0 0.005915828085195396 9.338323733536535E-5 36-37 9.338323733536536E-6 4.762545104103633E-4 0.0 0.009772555787145984 9.338323733536535E-5 38-39 9.338323733536536E-6 4.996003197442046E-4 0.0 0.015823789566477658 9.338323733536535E-5 40-41 9.338323733536536E-6 5.556302621454238E-4 0.0 0.022524036845290123 9.805239920213362E-5 42-43 9.338323733536536E-6 5.74306909612497E-4 0.0 0.029014171840098017 1.1205988480243842E-4 44-45 9.338323733536536E-6 6.396751757472526E-4 0.0 0.03627471854292267 1.2139820853597495E-4 46-47 9.338323733536536E-6 6.910359562817036E-4 0.0 0.0443196844393644 1.2606737040274322E-4 48-49 9.338323733536536E-6 6.910359562817036E-4 0.0 0.05194442576779698 1.3073653226951148E-4 50-51 9.338323733536536E-6 7.84419193617069E-4 0.0 0.059335709002891146 1.3073653226951148E-4 52-53 9.338323733536536E-6 7.937575173506055E-4 0.0 0.06683438296092098 1.4474401786981629E-4 54-55 9.338323733536536E-6 8.21772488551215E-4 0.0 0.07459452998348984 1.587515034701211E-4 56-57 9.338323733536536E-6 8.497874597518247E-4 0.0 0.08248541353832822 1.587515034701211E-4 58-59 9.338323733536536E-6 8.778024309524343E-4 0.0 0.09054905608223701 1.587515034701211E-4 60-61 9.338323733536536E-6 8.964790784195074E-4 0.0 0.0981597899250693 1.587515034701211E-4 62-63 9.338323733536536E-6 9.011482402862756E-4 0.0 0.10554173483642992 1.6808982720365763E-4 64-65 9.338323733536536E-6 0.0010085389632219458 0.0 0.11263419171205091 1.6808982720365763E-4 66-67 9.338323733536536E-6 0.001031884772555787 0.0 0.11990407673860912 1.6808982720365763E-4 68-69 9.338323733536536E-6 0.0010505614200228602 0.0 0.12715061595583346 1.6808982720365763E-4 70-71 9.338323733536536E-6 0.0010692380674899335 0.0 0.13344464615223708 1.6808982720365763E-4 72-73 9.338323733536536E-6 0.0010739072293567016 0.0 0.13789435741126727 1.7742815093719418E-4 74-75 9.338323733536536E-6 0.0011112605242908477 0.0 0.14170906265641692 1.7742815093719418E-4 76-77 9.338323733536536E-6 0.001153282981091762 0.0 0.14498681428688825 1.7742815093719418E-4 78-79 9.338323733536536E-6 0.0011626213048252987 0.0 0.147993754529087 1.7742815093719418E-4 80-81 9.338323733536536E-6 0.0011766287904256035 0.0 0.14949255548831963 1.8209731280396243E-4 82-83 9.338323733536536E-6 0.0011906362760259084 0.0 0.15020226809206838 2.0544312213780378E-4 84-85 9.338323733536536E-6 0.001204643761626213 0.0 0.15083260494408213 2.0544312213780378E-4 86-87 9.338323733536536E-6 0.0012139820853597496 0.0 0.1510707321992873 2.0544312213780378E-4 88-89 9.338323733536536E-6 0.0012233204090932861 0.0 0.15113143130355527 2.0544312213780378E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10575 0.0 39.71272 1 GTATCAA 17865 0.0 34.309574 1 TCAACGC 20615 0.0 28.907845 4 ATCAACG 20845 0.0 28.608871 3 CAACGCA 21130 0.0 28.303724 5 AACGCAG 22185 0.0 27.09187 6 TATCAAC 22455 0.0 26.804226 2 ACGCAGA 26290 0.0 22.861557 7 CGCAGAG 26755 0.0 22.432451 8 CTTATAC 7825 0.0 21.076595 1 TACATGG 26210 0.0 20.953112 2 GTACATG 26940 0.0 20.653568 1 ACATGGG 26985 0.0 19.846916 3 GCAGAGT 32375 0.0 18.38092 9 CATGGGG 20495 0.0 17.81543 4 TATACAC 12365 0.0 17.531576 3 AGAGTAC 28180 0.0 17.263298 10-11 GAGTACT 17820 0.0 17.030895 12-13 CAGAGTA 31390 0.0 16.14113 10-11 CTAACGC 750 0.0 15.868713 3 >>END_MODULE