##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139986_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9142110 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.479583050302395 34.0 31.0 34.0 31.0 34.0 2 32.68208794249905 34.0 31.0 34.0 31.0 34.0 3 32.77301837322019 34.0 31.0 34.0 31.0 34.0 4 36.19376413103758 37.0 37.0 37.0 35.0 37.0 5 36.037632340892856 37.0 35.0 37.0 35.0 37.0 6 36.06447144040052 37.0 35.0 37.0 35.0 37.0 7 36.08523087121026 37.0 35.0 37.0 35.0 37.0 8 36.07855735710903 37.0 35.0 37.0 35.0 37.0 9 37.94781303222123 39.0 38.0 39.0 35.0 39.0 10-11 37.83511897144095 39.0 38.0 39.0 35.0 39.0 12-13 37.85970197252057 39.0 38.0 39.0 35.0 39.0 14-15 39.16393622478837 40.0 39.0 41.0 36.0 41.0 16-17 39.13504989548365 40.0 39.0 41.0 36.0 41.0 18-19 39.178505399738135 40.0 39.0 41.0 36.0 41.0 20-21 39.22524506965695 40.0 39.0 41.0 36.0 41.0 22-23 39.183798109987926 40.0 39.0 41.0 36.0 41.0 24-25 39.16453103312076 40.0 39.0 41.0 36.0 41.0 26-27 39.05655641393625 40.0 39.0 41.0 36.0 41.0 28-29 38.97817956481673 40.0 38.5 41.0 35.0 41.0 30-31 38.84785354077105 40.0 38.0 41.0 35.0 41.0 32-33 38.76556764526999 40.0 38.0 41.0 35.0 41.0 34-35 38.702239701087194 40.0 38.0 41.0 35.0 41.0 36-37 38.63494621371116 40.0 38.0 41.0 35.0 41.0 38-39 38.5475292072756 40.0 38.0 41.0 35.0 41.0 40-41 38.54633145847129 40.0 38.0 41.0 35.0 41.0 42-43 38.49612032311239 40.0 38.0 41.0 34.0 41.0 44-45 38.45962047847814 40.0 38.0 41.0 34.0 41.0 46-47 38.35794281661347 40.0 38.0 41.0 34.0 41.0 48-49 38.339858888212866 40.0 38.0 41.0 34.0 41.0 50-51 38.25926914545522 40.0 37.5 41.0 34.0 41.0 52-53 38.08109065073194 40.0 37.0 41.0 33.5 41.0 54-55 37.932988228552034 40.0 37.0 41.0 33.0 41.0 56-57 37.73422553781555 39.0 36.0 41.0 33.0 41.0 58-59 37.49606073889473 39.0 36.0 41.0 33.0 41.0 60-61 37.327398706482285 39.0 35.5 40.5 32.5 41.0 62-63 37.15133694657081 39.0 35.0 40.0 32.0 41.0 64-65 36.88676338916458 38.0 35.0 40.0 32.0 41.0 66-67 36.68344710279077 37.5 35.0 40.0 32.0 41.0 68-69 36.40339999583357 37.0 35.0 40.0 32.0 41.0 70-71 36.07617487380452 36.5 35.0 39.0 31.0 41.0 72-73 35.82278961008894 36.0 35.0 39.0 31.0 41.0 74-75 35.47553236243909 35.5 34.0 38.5 31.0 40.0 76-77 33.498936835210195 34.5 32.0 36.5 28.0 39.0 78-79 34.63631976666626 35.0 34.0 37.0 30.5 39.0 80-81 34.628503476664136 35.0 34.0 36.5 31.0 39.0 82-83 34.40608703858383 35.0 34.0 36.0 31.0 38.0 84-85 34.15425050481163 35.0 34.0 36.0 31.0 37.0 86-87 33.953339256907654 35.0 34.0 35.5 30.0 37.0 88-89 33.76366228479198 35.0 34.0 35.0 30.0 36.5 90-91 33.7212359353518 35.0 34.0 35.0 30.0 36.0 92-93 33.64679505007949 35.0 34.0 35.0 30.0 36.0 94-95 33.57088426378441 35.0 34.0 35.0 30.0 36.0 96-97 33.578728230205286 35.0 34.0 35.0 30.0 35.0 98-99 33.64238770971127 35.0 34.0 35.0 31.0 35.0 100-101 32.38496522950851 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 3.0 18 14.0 19 54.0 20 72.0 21 244.0 22 790.0 23 2449.0 24 6273.0 25 13244.0 26 24483.0 27 39935.0 28 60419.0 29 83793.0 30 112830.0 31 148165.0 32 198809.0 33 274013.0 34 413139.0 35 654003.0 36 1212906.0 37 2272625.0 38 2538484.0 39 1066362.0 40 18999.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18020785136035 20.106189927708154 13.717369403780966 23.996232817150524 2 14.877390622253381 20.849758130650685 41.65780729407032 22.61504395302562 3 18.61327793422464 26.21212167618474 30.119633721815497 25.054966667775112 4 12.668195427630845 17.73573830972592 38.09493806855448 31.50112819408876 5 13.228555905426198 37.95054292177002 35.258844540138384 13.562056632665396 6 30.08334861066689 37.50734515237445 18.478696979813357 13.930609257145306 7 26.664522741467778 32.49837291391156 22.569702180350053 18.26740216427061 8 24.75313945748818 36.65189800379672 21.044912522881766 17.550050015833335 9 25.899958838585235 16.362094438921133 20.769122310219682 36.96882441227395 10-11 24.687083928931617 26.547543728618077 28.292542781348818 20.472829561101495 12-13 25.445256062092525 23.967974969424418 28.591300531748782 21.995468436734278 14-15 22.606476536921242 25.29084101828594 26.179334131690414 25.923348313102405 16-17 22.109757939756047 28.606568342397114 26.737438803473566 22.546234914373265 18-19 22.162580629635826 27.58031242240577 28.587147824736302 21.669959123222103 20-21 23.057533145498905 26.63710372829502 28.421775113028275 21.8835880131778 22-23 22.682108292493957 26.81649907631074 28.33600660686841 22.16538602432689 24-25 22.48972516660391 27.02457632691954 28.482968545151 22.00272996132555 26-27 22.472778820382526 27.189481830123285 28.371331450477832 21.966407899016353 28-29 22.158259729354732 27.3203002358658 28.39318942977624 22.12825060500323 30-31 22.86433102504878 27.040984731496952 28.282813760326743 21.811870483127525 32-33 22.109741964913145 27.458177833040683 28.340407165664832 22.091673036381344 34-35 22.365274083862115 27.343543317765256 28.499733319927977 21.791449278444656 36-37 22.252112695767146 27.310131720969327 28.395424141876656 22.042331441386867 38-39 22.164515665201495 27.059129587831265 28.596447266886628 22.17990748008061 40-41 22.387331607825516 26.91368072887203 28.53152643513101 22.167461228171444 42-43 22.453861927546136 26.991740097837287 28.292527892633245 22.261870081983336 44-45 22.26948224602645 27.33836671225434 28.079798126822126 22.312352914897083 46-47 22.700668627794236 26.99230423458041 27.590849493522008 22.716177644103343 48-49 22.547517034810273 27.151592193712766 27.59670598061718 22.704184790859777 50-51 22.32876380510191 27.33227610472963 27.676305030887004 22.66265505928146 52-53 22.57517465536305 27.310632896044407 27.662902320229776 22.451290128362768 54-55 22.459518613997677 27.2094005409979 27.516964518483277 22.814116326521138 56-57 22.801785520030855 27.465047369930478 27.114253997765008 22.61891311227366 58-59 22.411203442050915 27.792525438096906 27.476086817987134 22.32018430186504 60-61 22.695369613971376 27.938143878696053 27.047312011698466 22.319174495634105 62-63 22.51010999489293 28.020597234158434 27.042121249992928 22.427171520955707 64-65 22.504791685184784 27.830261345925916 27.119993233121313 22.544953735767983 66-67 22.692344534203688 27.70527207328296 26.936825382995412 22.66555800951794 68-69 22.614019358557048 27.565534462935616 27.167941422811836 22.652504755695503 70-71 22.645472035203614 27.256118622440482 27.229326051989005 22.869083290366895 72-73 22.730640874813176 27.276220931573707 27.231352361160315 22.761785832452798 74-75 22.483275057153605 27.4831593136045 27.208393889521528 22.825171739720368 76-77 22.6833913299445 27.38452798442425 27.081641883214658 22.85043880241659 78-79 22.639374611332595 27.45478577046135 27.05588867348932 22.849950944716735 80-81 22.642987776425908 27.413347107791864 27.074459724295057 22.869205391487167 82-83 22.750690033342412 27.208820650213816 27.265407064469354 22.775082251974414 84-85 22.86973462526246 27.252312683458964 27.116372112596608 22.761580578681976 86-87 22.63406517066416 27.302823665706693 27.21892761480501 22.844183548824134 88-89 22.770357969974977 27.22979173212935 27.13579416467339 22.86405613322228 90-91 22.79691920686455 27.133430059197668 27.283651015036604 22.78599971890118 92-93 22.856533600052547 27.11145660360115 27.221162545031873 22.810847251314424 94-95 22.66510648672125 27.177807234089958 27.27592258622833 22.881163692960463 96-97 22.70958061770211 27.140446803102975 27.33433136665935 22.815641212535567 98-99 22.891587545405322 27.8101655619628 27.33200405898823 21.966242833643644 100-101 27.221302119282107 34.77620329688389 27.93607447875843 10.06642010507557 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1735.0 1 1662.5 2 2711.0 3 4058.0 4 5666.0 5 9750.0 6 13194.0 7 15844.0 8 17767.0 9 17038.5 10 14534.0 11 12280.0 12 13086.5 13 17825.0 14 29302.0 15 44871.0 16 56823.5 17 62790.0 18 62940.0 19 58257.0 20 51747.0 21 45351.0 22 41539.5 23 43261.0 24 50750.5 25 63224.0 26 80316.5 27 98227.5 28 114759.0 29 132269.5 30 147820.5 31 161758.5 32 178472.0 33 197293.0 34 215358.5 35 233132.5 36 253596.0 37 271675.0 38 283401.5 39 293179.5 40 307092.0 41 320754.5 42 331535.0 43 345915.0 44 360450.5 45 375020.0 46 395369.0 47 417259.5 48 424626.5 49 422089.0 50 419409.0 51 413100.0 52 398036.5 53 377523.5 54 355890.5 55 330126.5 56 303961.5 57 274888.0 58 245560.5 59 216043.0 60 181404.0 61 146721.5 62 116129.5 63 89952.5 64 67573.5 65 50027.5 66 37609.0 67 28814.0 68 21940.5 69 15710.5 70 11117.0 71 7947.0 72 5409.0 73 3602.0 74 2502.5 75 1737.0 76 1223.0 77 861.5 78 593.0 79 414.0 80 282.5 81 190.0 82 140.5 83 106.5 84 74.0 85 51.0 86 37.0 87 26.0 88 14.5 89 9.5 90 6.0 91 2.5 92 0.5 93 0.0 94 0.0 95 0.5 96 0.5 97 0.0 98 0.0 99 0.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0020892332295279754 3 0.002253309137606089 4 7.219339955436984E-4 5 1.0938393871874217E-5 6 2.843982406687297E-4 7 0.0 8 5.469196935937109E-5 9 5.797348752093334E-4 10-11 4.594125426187171E-4 12-13 1.2032233259061639E-4 14-15 2.1876787743748435E-5 16-17 5.141045119780882E-4 18-19 0.0 20-21 3.828591759175015E-5 22-23 0.0 24-25 0.0 26-27 3.284176509161211E-5 28-29 2.5199274217077724E-4 30-31 6.255722408354353E-4 32-33 3.577447922402623E-4 34-35 0.001093776835165566 36-37 1.3883584588265916E-4 38-39 1.2313436741201951E-4 40-41 2.8801677409692343E-4 42-43 0.001487889011004735 44-45 4.035141470618838E-4 46-47 1.8101605244513855E-4 48-49 2.423910350315939E-4 50-51 0.0 52-53 5.802520288421524E-4 54-55 6.047157936555785E-4 56-57 5.871760140452503E-4 58-59 5.946882321903237E-4 60-61 6.342928259768792E-4 62-63 1.9286518395770542E-5 64-65 6.646928330603097E-4 66-67 0.0024392859092963763 68-69 0.0011196845573709269 70-71 2.2429042156880003E-4 72-73 0.0 74-75 9.761494613119196E-5 76-77 1.4124842419726754E-5 78-79 9.875364315070493E-4 80-81 1.7416396579477767E-4 82-83 9.56845319256225E-5 84-85 6.34221155901633E-4 86-87 2.042550719182108E-4 88-89 1.5354059624880363E-5 90-91 3.899815608918379E-5 92-93 1.586604488694491E-4 94-95 6.458102254362045E-4 96-97 8.233239101167407E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 230.0 20-21 769.0 22-23 1655.0 24-25 3593.0 26-27 6057.0 28-29 12084.0 30-31 25869.0 32-33 31211.0 34-35 42134.0 36-37 65253.0 38-39 79897.0 40-41 80796.0 42-43 92215.0 44-45 109691.0 46-47 107721.0 48-49 100130.0 50-51 89559.0 52-53 84763.0 54-55 93543.0 56-57 101870.0 58-59 102804.0 60-61 107565.0 62-63 104654.0 64-65 105181.0 66-67 109657.0 68-69 101890.0 70-71 97419.0 72-73 90562.0 74-75 91412.0 76-77 90824.0 78-79 96443.0 80-81 98073.0 82-83 92788.0 84-85 91245.0 86-87 94784.0 88-89 100635.0 90-91 107937.0 92-93 107035.0 94-95 115697.0 96-97 169044.0 98-99 720466.0 100-101 5216955.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.41065696294318 #Duplication Level Percentage of deduplicated Percentage of total 1 90.00390103247446 76.87292316411363 2 6.938627808547122 11.852655190987127 3 1.7248640260684784 4.419653089147676 4 0.6551908189743627 2.2384111313875636 5 0.2753222965350274 1.1757729111801472 6 0.13716399584733094 0.7029160198189767 7 0.07311474103746338 0.43713446459796457 8 0.05032781049582086 0.34388250863636527 9 0.029897445830049284 0.22982044408726643 >10 0.10859299224864759 1.4182738542144353 >50 0.002386379243380121 0.13484020408396938 >100 4.681425268634905E-4 0.06196190820837136 >500 1.0179323112786226E-4 0.05913810485103896 >1k 4.0716939913594E-5 0.05261700468547245 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.281518161562265E-5 0.0 1.0938393871874217E-5 0.0 3 0.0 3.281518161562265E-5 0.0 1.0938393871874217E-5 0.0 4 0.0 1.0938393871874218E-4 0.0 2.1876787743748435E-5 0.0 5 0.0 1.0938393871874218E-4 0.0 2.1876787743748435E-5 0.0 6 0.0 1.0938393871874218E-4 0.0 2.1876787743748435E-5 3.281518161562265E-5 7 0.0 1.2032233259061639E-4 0.0 3.281518161562265E-5 3.281518161562265E-5 8 0.0 1.2032233259061639E-4 0.0 3.281518161562265E-5 3.281518161562265E-5 9 0.0 2.7345984679685544E-4 0.0 3.281518161562265E-5 4.375357548749687E-5 10-11 1.0938393871874217E-5 2.7345984679685544E-4 0.0 3.281518161562265E-5 4.375357548749687E-5 12-13 1.0938393871874217E-5 2.843982406687296E-4 0.0 7.109956016718242E-5 4.375357548749687E-5 14-15 1.0938393871874217E-5 4.156589671312202E-4 0.0 7.656875710311953E-5 4.922277242343398E-5 16-17 1.6407590807811325E-5 4.375357548749687E-4 0.0 8.203795403905663E-5 6.56303632312453E-5 18-19 2.1876787743748435E-5 4.484741487468429E-4 0.0 1.0938393871874218E-4 6.56303632312453E-5 20-21 2.1876787743748435E-5 4.594125426187171E-4 0.0 1.257915295265535E-4 6.56303632312453E-5 22-23 3.281518161562265E-5 5.086353150421511E-4 0.0 1.5860671114217617E-4 9.844554484686795E-5 24-25 4.9222772423433975E-5 5.414504966577737E-4 0.0 2.2423707437342144E-4 1.312607264624906E-4 26-27 7.109956016718242E-5 5.797348752093335E-4 0.0 3.336210130921636E-4 1.5860671114217617E-4 28-29 7.656875710311953E-5 5.797348752093335E-4 0.0 0.0010227398270202393 1.6407590807811326E-4 30-31 7.656875710311953E-5 7.438107832874468E-4 0.0 0.002575991756826378 1.6954510501405036E-4 32-33 7.656875710311953E-5 7.711567679671322E-4 0.0 0.005102760741229322 1.859526958218617E-4 34-35 8.750715097499374E-5 9.735170545968053E-4 0.0 0.008581169992485323 1.859526958218617E-4 36-37 9.844554484686795E-5 0.001159469750418667 0.0 0.01397926736825525 1.859526958218617E-4 38-39 9.844554484686795E-5 0.0011922849320342896 0.0 0.022046332848762486 1.859526958218617E-4 40-41 1.0938393871874218E-4 0.001301668870753032 0.0 0.031201768519521205 1.859526958218617E-4 42-43 1.0938393871874218E-4 0.0013344840523686545 0.0 0.03936181034793937 1.859526958218617E-4 44-45 1.0938393871874218E-4 0.0014438679910873968 0.0 0.04824378617190124 1.859526958218617E-4 46-47 1.0938393871874218E-4 0.0015204367481905163 0.0 0.058947004575530156 2.0236028662967302E-4 48-49 1.0938393871874218E-4 0.0015204367481905163 0.0 0.06861107556133103 2.2970627130935856E-4 50-51 1.0938393871874218E-4 0.0016735742623967553 0.0 0.07830249253181158 2.3517546824529568E-4 52-53 1.0938393871874218E-4 0.0016899818532045666 0.0 0.08703680003850314 2.679906498609183E-4 54-55 1.0938393871874218E-4 0.0017063894440123779 0.0 0.09692510809867744 3.0080583147654096E-4 56-57 1.0938393871874218E-4 0.0017282662317561262 0.0 0.10586177589199867 3.062750284124781E-4 58-59 1.0938393871874218E-4 0.001766550610307686 0.0 0.11375382707055592 3.062750284124781E-4 60-61 1.0938393871874218E-4 0.0018376501704748685 0.0 0.12172244700621629 3.062750284124781E-4 62-63 1.0938393871874218E-4 0.001870465352090491 0.0 0.1288542798106783 3.062750284124781E-4 64-65 1.0938393871874218E-4 0.0021001716233998496 0.0 0.13573999875302312 3.062750284124781E-4 66-67 1.2032233259061639E-4 0.0021384560019514095 0.0 0.14284448557280538 3.117442253484152E-4 68-69 1.312607264624906E-4 0.002209555562118592 0.0 0.15015680187615332 3.172134222843523E-4 70-71 1.312607264624906E-4 0.002236901546798277 0.0 0.15702064403075439 3.2815181615622653E-4 72-73 1.312607264624906E-4 0.0022697167284139 0.0 0.16224919630151027 4.156589671312203E-4 74-75 1.312607264624906E-4 0.0023408162885810825 0.0 0.16689254450012087 4.156589671312203E-4 76-77 1.312607264624906E-4 0.002461138621171699 0.0 0.17064441359817373 4.156589671312203E-4 78-79 1.312607264624906E-4 0.0025322381813388814 0.0 0.17410094606168597 4.156589671312203E-4 80-81 1.367299233984277E-4 0.002543176575210755 0.0 0.17574717433940307 4.430049518109058E-4 82-83 1.421991203343648E-4 0.0025595841660185667 0.0 0.17635425519929204 4.976969211702769E-4 84-85 1.421991203343648E-4 0.0025978685445701265 0.0 0.17686289051433424 5.03166118106214E-4 86-87 1.421991203343648E-4 0.0026470913169935606 0.0 0.17714181955806702 5.03166118106214E-4 88-89 1.421991203343648E-4 0.0028658591944310447 0.0 0.17727854948146543 5.195737089140253E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13875 0.0 45.564903 1 CTTATAC 9315 0.0 37.286568 1 GTATCAA 25255 0.0 34.561836 1 TATACAC 12120 0.0 31.556608 3 ATCAACG 30740 0.0 27.748951 3 TCAACGC 30885 0.0 27.61822 4 CAACGCA 30960 0.0 27.551468 5 TATCAAC 31705 0.0 27.1394 2 AACGCAG 32000 0.0 26.75941 6 TTATACA 14215 0.0 25.451721 2 ACGCAGA 36660 0.0 23.312675 7 TACACAT 16430 0.0 23.051773 5 CGCAGAG 37155 0.0 22.979832 8 ACACATC 15570 0.0 22.598904 6 GTACATG 34555 0.0 22.316387 1 TACATGG 33920 0.0 22.307516 2 ACATCTC 16675 0.0 21.398779 8 ACATGGG 34610 0.0 21.39662 3 GCAGAGT 42375 0.0 20.090498 9 CACATCT 17710 0.0 19.681269 7 >>END_MODULE