##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139985_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12358789 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45267703817906 33.0 31.0 34.0 31.0 34.0 2 32.65702691420656 34.0 31.0 34.0 31.0 34.0 3 32.7494890478347 34.0 31.0 34.0 31.0 34.0 4 36.17737263739999 37.0 37.0 37.0 35.0 37.0 5 36.018156552393606 37.0 35.0 37.0 35.0 37.0 6 36.042745612049856 37.0 35.0 37.0 35.0 37.0 7 36.0573618499353 37.0 35.0 37.0 35.0 37.0 8 36.047367747762344 37.0 35.0 37.0 35.0 37.0 9 37.90672500355819 39.0 38.0 39.0 35.0 39.0 10-11 37.78645314682531 39.0 37.5 39.0 35.0 39.0 12-13 37.81465805428024 39.0 38.0 39.0 35.0 39.0 14-15 39.12786196123261 40.0 39.0 41.0 36.0 41.0 16-17 39.088311079669694 40.0 38.0 41.0 36.0 41.0 18-19 39.12102884837665 40.0 39.0 41.0 36.0 41.0 20-21 39.159551046511126 40.0 39.0 41.0 36.0 41.0 22-23 39.11894370839832 40.0 39.0 41.0 36.0 41.0 24-25 39.1105437146401 40.0 39.0 41.0 36.0 41.0 26-27 39.006095192238675 40.0 39.0 41.0 36.0 41.0 28-29 38.921079748519965 40.0 38.0 41.0 35.0 41.0 30-31 38.810077627599455 40.0 38.0 41.0 35.0 41.0 32-33 38.74876442604476 40.0 38.0 41.0 35.0 41.0 34-35 38.69294410329424 40.0 38.0 41.0 35.0 41.0 36-37 38.634792289550674 40.0 38.0 41.0 35.0 41.0 38-39 38.5456734975467 40.0 38.0 41.0 34.5 41.0 40-41 38.54784043284215 40.0 38.0 41.0 35.0 41.0 42-43 38.506596081191944 40.0 38.0 41.0 34.0 41.0 44-45 38.476973785174934 40.0 38.0 41.0 34.0 41.0 46-47 38.385414288653465 40.0 38.0 41.0 34.0 41.0 48-49 38.37332186901544 40.0 38.0 41.0 34.0 41.0 50-51 38.29101348243522 40.0 38.0 41.0 34.0 41.0 52-53 38.13150750540862 40.0 37.0 41.0 33.5 41.0 54-55 37.98194908862992 40.0 37.0 41.0 33.0 41.0 56-57 37.813559630283 39.5 37.0 41.0 33.0 41.0 58-59 37.613207645392734 39.0 36.0 41.0 33.0 41.0 60-61 37.45855832203877 39.0 36.0 41.0 32.5 41.0 62-63 37.30408974069907 39.0 35.5 40.5 32.0 41.0 64-65 37.060996047977824 39.0 35.0 40.0 32.0 41.0 66-67 36.876419964941846 38.0 35.0 40.0 32.0 41.0 68-69 36.607886418613525 37.5 35.0 40.0 32.0 41.0 70-71 36.28806520070952 37.0 35.0 39.5 31.0 41.0 72-73 36.02926424799382 36.5 35.0 39.0 31.0 41.0 74-75 35.66843245972508 36.0 34.5 39.0 31.0 40.0 76-77 33.63966826187402 34.5 32.0 36.5 28.0 39.0 78-79 34.80648600743511 35.0 34.0 37.0 30.5 39.0 80-81 34.77727245151203 35.0 34.0 37.0 31.0 39.0 82-83 34.52921075971104 35.0 34.0 36.5 31.0 39.0 84-85 34.25309446931197 35.0 34.0 36.0 31.0 37.0 86-87 34.02242248347325 35.0 34.0 36.0 30.0 37.0 88-89 33.81205020731027 35.0 34.0 35.0 30.0 36.5 90-91 33.75018029376852 35.0 34.0 35.0 30.0 36.0 92-93 33.66153804906685 35.0 34.0 35.0 30.0 36.0 94-95 33.572240310618476 35.0 34.0 35.0 30.0 36.0 96-97 33.571143421915 35.0 34.0 35.0 30.0 35.5 98-99 33.62835997810912 35.0 34.0 35.0 30.5 35.0 100-101 32.392562543321404 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 23.0 20 62.0 21 256.0 22 1017.0 23 3224.0 24 8362.0 25 18152.0 26 33012.0 27 54281.0 28 80761.0 29 113477.0 30 153600.0 31 202516.0 32 270761.0 33 370990.0 34 548850.0 35 858684.0 36 1562270.0 37 2946162.0 38 3558182.0 39 1543568.0 40 30577.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.81038198807342 20.71600219082954 14.087035550165957 24.386580270931077 2 14.409167149934826 21.065588288864976 42.00659089572145 22.518653665478748 3 18.176896278144124 26.09731694459313 30.647114108242228 25.078672669020513 4 12.421185178136628 18.18613681227079 38.61196422023129 30.780713789361293 5 13.008888897519725 37.803140566858175 35.98089877421637 13.20707176140573 6 29.814727037663552 38.18597821233851 18.6832506684744 13.316044081523534 7 26.09231373721163 32.56976067800817 23.12590659165716 18.21201899312303 8 23.911761869128874 37.54678453802575 21.466755952689194 17.074697640156185 9 24.905789351844174 16.9086559868841 21.23411276278061 36.95144189849112 10-11 23.895572003775634 26.91785186592799 29.030834229428276 20.155741900868104 12-13 24.60796883186238 24.225305501556587 29.143005678151756 22.023719988429274 14-15 21.837736773920216 25.892978297296747 26.3513931752018 25.91789175358124 16-17 21.761717857413345 29.215258443738296 27.044495783713945 21.978527915134418 18-19 21.759886830335883 28.23164955725031 28.47545985290306 21.53300375951074 20-21 22.3452235783048 27.437509659492278 28.4921603358388 21.72510642636412 22-23 21.938509695259476 27.738877419970915 28.338590782442765 21.984022102326847 24-25 21.913774325138522 27.82456003598123 28.504639365955953 21.7570262729243 26-27 22.030191216979052 28.010160774333926 28.32186690057717 21.637781108109856 28-29 21.498206832985165 27.79753888126038 28.57700565520926 22.127248630545196 30-31 22.13576066412542 27.514488060654536 28.68375650861329 21.665994766606758 32-33 21.745984166232454 28.065421573948974 28.383217282790916 21.805376977027656 34-35 21.691039694267182 28.126450694371798 28.80478312323465 21.377726488126374 36-37 22.08565188439619 27.838892226687506 28.333176784141017 21.742279104775292 38-39 21.78924703283208 27.723715422943933 28.55878722929403 21.928250314929958 40-41 21.887078588619442 27.598301076676314 28.64878539252934 21.865834942174903 42-43 21.951904901281853 27.561534886427953 28.631812994339324 21.85474721795087 44-45 21.725685876085294 27.93811445802824 28.429265358928273 21.90693430695819 46-47 22.224113680484884 27.55840264351395 27.896596530991747 22.320887145009415 48-49 21.999286757018925 27.633875759915362 28.145583086610493 22.22125439645522 50-51 21.857902898405573 27.907872589386884 28.139128658418617 22.095095853788923 52-53 21.938891956052554 28.02342379976318 28.232332523753833 21.80535172043043 54-55 21.849002144450782 27.99057921832242 27.967203260720446 22.193215376506352 56-57 22.239364689139972 28.149052576125904 27.601213112295202 22.01036962243892 58-59 21.8172899226526 28.39863365955633 28.065859579345627 21.71821683844544 60-61 22.183220705774705 28.58353494611645 27.52396614052793 21.70927820758092 62-63 21.963810388787135 28.71207055132362 27.527021931828838 21.79709712806041 64-65 21.941169065665324 28.487532144608142 27.621716513608163 21.949582276118374 66-67 22.07318759407923 28.302618487948894 27.554975181134374 22.069218736837502 68-69 22.03367623101477 28.224882522225688 27.676446912326057 22.06499433443349 70-71 22.046600080976315 27.95888658475873 27.74676077056229 22.247752563702665 72-73 22.086864284785307 28.009777668995973 27.732844716037263 22.17051333018146 74-75 21.963571005356965 28.140304431405283 27.744893060988137 22.15123150224962 76-77 22.063781784549743 28.118393301279088 27.609954973567035 22.207869940604134 78-79 22.040730950125443 28.14529714556847 27.571635356730646 22.242336547575448 80-81 22.019814157817347 28.15877854785108 27.641380450652616 22.180026843678956 82-83 22.10712514790924 28.070212693759732 27.757958639048912 22.064703519282112 84-85 22.211147122293255 28.06402272066768 27.642066036989437 22.08276412004962 86-87 21.999850902252362 28.124842638580027 27.697708536408683 22.177597922758927 88-89 22.08901735477179 28.083499067722645 27.63224736288739 22.195236214618173 90-91 22.11127213888574 28.069040036357134 27.71846332397449 22.10122450078264 92-93 22.137979635974826 28.07152582496904 27.66710714717971 22.123387391876427 94-95 21.990712095484586 28.148554860774453 27.71681889450387 22.143914149237094 96-97 22.013260381190946 28.134566425732878 27.768842207269362 22.083330985806814 98-99 22.19670516565608 28.784592999969043 27.796851208411244 21.221850625963633 100-101 26.225493980244668 35.79508071048643 28.388033525125888 9.59139178414301 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2693.0 1 2341.0 2 2959.0 3 4245.5 4 5721.0 5 8898.0 6 11629.5 7 13751.5 8 15392.0 9 15374.0 10 14084.0 11 12687.5 12 13490.0 13 17446.5 14 26465.0 15 38384.5 16 47811.0 17 53192.0 18 54882.5 19 54172.0 20 52709.0 21 51883.0 22 54094.0 23 62241.0 24 76914.0 25 97116.0 26 122381.0 27 149893.5 28 178285.5 29 207516.0 30 232812.0 31 256998.0 32 283657.5 33 309590.0 34 335029.0 35 359455.5 36 386809.0 37 412391.5 38 431753.5 39 448220.5 40 465797.5 41 484891.5 42 500548.0 43 514239.0 44 526639.5 45 542324.0 46 562551.5 47 583356.5 48 584780.5 49 573574.5 50 564961.5 51 543498.5 52 508085.5 53 467408.0 54 428256.0 55 390928.5 56 353764.5 57 314802.5 58 276523.0 59 238426.5 60 198495.0 61 161214.0 62 128195.5 63 99791.5 64 75369.0 65 55995.5 66 42106.5 67 32026.0 68 24333.0 69 17779.5 70 12770.5 71 9142.5 72 6387.0 73 4420.0 74 3036.5 75 2109.0 76 1490.5 77 992.0 78 664.0 79 458.0 80 324.5 81 216.5 82 148.5 83 101.5 84 76.5 85 64.5 86 48.0 87 36.0 88 28.5 89 21.0 90 13.0 91 9.0 92 7.5 93 3.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018286581314722664 3 0.00245978792906004 4 5.906727592808647E-4 5 8.091407661381709E-6 6 4.126617907304672E-4 7 0.0 8 4.045703830690855E-5 9 3.883875677463221E-4 10-11 5.86627055450174E-4 12-13 1.1327970725934393E-4 14-15 4.854844596829026E-5 16-17 3.641133447621769E-4 18-19 0.0 20-21 8.496300124276595E-5 22-23 4.046264993940718E-5 24-25 0.0 26-27 1.0526771381320107E-4 28-29 2.3500681823661015E-4 30-31 6.696633492761913E-4 32-33 3.3789750078795254E-4 34-35 0.0010175189382136756 36-37 1.2737582100393594E-4 38-39 1.6982909849288274E-4 40-41 2.6329848556980114E-4 42-43 0.0013284830347444704 44-45 3.196310486020744E-4 46-47 1.6820388484555023E-4 48-49 4.7566761586357605E-4 50-51 0.0 52-53 4.729750743474428E-4 54-55 5.144489299778146E-4 56-57 7.133751810189521E-4 58-59 5.982190323802514E-4 60-61 7.101585642982972E-4 62-63 7.630546489247559E-5 64-65 7.547158857534314E-4 66-67 0.002396975135263321 68-69 0.001166192033154142 70-71 2.6776473785958466E-4 72-73 0.0 74-75 4.6649459581560566E-5 76-77 5.250834462612798E-6 78-79 9.418247114158626E-4 80-81 1.5109799676434432E-4 82-83 8.75687606327631E-5 84-85 7.767613424078292E-4 86-87 2.5318421345792245E-4 88-89 3.426229453901282E-5 90-91 1.1602352121640917E-5 92-93 1.297610968445994E-4 94-95 6.001297960722945E-4 96-97 6.123981849742594E-6 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 288.0 20-21 1007.0 22-23 2173.0 24-25 4396.0 26-27 7665.0 28-29 15078.0 30-31 36653.0 32-33 42883.0 34-35 58786.0 36-37 91388.0 38-39 108770.0 40-41 106409.0 42-43 117507.0 44-45 137580.0 46-47 137381.0 48-49 132098.0 50-51 123239.0 52-53 121732.0 54-55 141169.0 56-57 152819.0 58-59 150014.0 60-61 150450.0 62-63 148278.0 64-65 149585.0 66-67 153857.0 68-69 137499.0 70-71 130638.0 72-73 122713.0 74-75 124348.0 76-77 123382.0 78-79 130506.0 80-81 131285.0 82-83 124824.0 84-85 123823.0 86-87 129063.0 88-89 135623.0 90-91 141308.0 92-93 143726.0 94-95 156975.0 96-97 235474.0 98-99 967775.0 100-101 7008622.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.98295161591537 #Duplication Level Percentage of deduplicated Percentage of total 1 89.87230626608934 76.37613855021799 2 6.961486828973627 11.83215396722996 3 1.7537029979555245 4.471045710718203 4 0.6465538663159442 2.197842237528436 5 0.30757775430479795 1.3069432706108275 6 0.15522331943353382 0.7914801507049068 7 0.08836475385270068 0.5256648320851434 8 0.05592494410388458 0.3802133455122556 9 0.03825137322172328 0.2925643139769627 >10 0.117064571919442 1.5383913809607646 >50 0.00272443099282104 0.15709240228251195 >100 7.559709275573663E-4 0.09852083622474732 >500 6.292190910398933E-5 0.03194900194738469 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.09140766138171E-6 0.0 8.09140766138171E-6 0.0 3 0.0 8.09140766138171E-6 0.0 1.618281532276342E-5 0.0 4 0.0 7.282266895243539E-5 0.0 1.618281532276342E-5 0.0 5 0.0 8.90054842751988E-5 0.0 2.427422298414513E-5 0.0 6 0.0 9.709689193658052E-5 0.0 2.427422298414513E-5 0.0 7 0.0 9.709689193658052E-5 0.0 3.236563064552684E-5 0.0 8 0.0 1.0518829959796223E-4 0.0 3.236563064552684E-5 0.0 9 0.0 1.699195608890159E-4 0.0 4.854844596829026E-5 8.09140766138171E-6 10-11 0.0 1.699195608890159E-4 0.0 1.1327970725934393E-4 8.09140766138171E-6 12-13 0.0 1.7396526471970676E-4 0.0 1.3350822641279821E-4 8.09140766138171E-6 14-15 0.0 2.0228519153454275E-4 0.0 1.4969104173556162E-4 2.0228519153454275E-5 16-17 0.0 2.0228519153454275E-4 0.0 1.618281532276342E-4 4.045703830690855E-5 18-19 0.0 2.1846800685730616E-4 0.0 1.9823948770385187E-4 4.854844596829026E-5 20-21 0.0 2.3869652601076044E-4 0.0 2.5487934133352385E-4 4.854844596829026E-5 22-23 0.0 2.710621566562873E-4 0.0 2.8319926814835984E-4 7.282266895243539E-5 24-25 4.045703830690855E-6 3.034277873018141E-4 0.0 2.993820834711233E-4 8.90054842751988E-5 26-27 8.09140766138171E-6 3.155648987938867E-4 0.0 3.8029616008494033E-4 9.709689193658052E-5 28-29 8.09140766138171E-6 3.1961060262457753E-4 0.0 7.889122469847168E-4 9.709689193658052E-5 30-31 8.09140766138171E-6 3.560219371007952E-4 0.0 0.0022655941451868787 9.709689193658052E-5 32-33 8.09140766138171E-6 3.560219371007952E-4 0.0 0.005053084084532878 9.709689193658052E-5 34-35 8.09140766138171E-6 4.207531983918489E-4 0.0 0.00861330345554083 9.709689193658052E-5 36-37 8.09140766138171E-6 4.895301635135935E-4 0.0 0.013787758654994434 9.709689193658052E-5 38-39 8.09140766138171E-6 5.01667275005666E-4 0.0 0.02195603468915927 9.709689193658052E-5 40-41 8.09140766138171E-6 5.58307128635338E-4 0.0 0.03037919006465763 9.709689193658052E-5 42-43 8.09140766138171E-6 5.866270554501739E-4 0.0 0.038486780541362106 1.0114259576727137E-4 44-45 8.09140766138171E-6 6.351755014184642E-4 0.0 0.04762602549489274 1.1327970725934394E-4 46-47 1.2137111492072565E-5 6.554040205719185E-4 0.0 0.057392354542180474 1.173254110900348E-4 48-49 1.618281532276342E-5 6.594497244026094E-4 0.0 0.06699280973240987 1.2946252258210736E-4 50-51 1.618281532276342E-5 7.322723933550447E-4 0.0 0.07642334536175024 1.2946252258210736E-4 52-53 1.618281532276342E-5 7.403638010164264E-4 0.0 0.08550190475782053 1.3350822641279821E-4 54-55 1.618281532276342E-5 7.646380240005716E-4 0.0 0.0946249668960284 1.3755393024348907E-4 56-57 1.618281532276342E-5 7.848665431540258E-4 0.0 0.10284988278382291 1.3755393024348907E-4 58-59 1.618281532276342E-5 7.929579508154076E-4 0.0 0.11142272920105684 1.4159963407417992E-4 60-61 1.618281532276342E-5 7.970036546460984E-4 0.0 0.11957482241989892 1.5373674556625247E-4 62-63 1.618281532276342E-5 8.131864699688618E-4 0.0 0.1278523324574924 1.618281532276342E-4 64-65 1.618281532276342E-5 8.90054842751988E-4 0.0 0.13596396863802757 1.6587385705832506E-4 66-67 1.618281532276342E-5 9.062376580747514E-4 0.0 0.14390568525767372 1.699195608890159E-4 68-69 1.618281532276342E-5 9.345575848895874E-4 0.0 0.15150756275554184 1.699195608890159E-4 70-71 1.618281532276342E-5 9.547861040430418E-4 0.0 0.15867250423969534 1.699195608890159E-4 72-73 2.0228519153454275E-5 9.628775117044235E-4 0.0 0.1643445810103239 1.9419378387316104E-4 74-75 2.427422298414513E-5 9.952431423499502E-4 0.0 0.16909828301138566 1.9419378387316104E-4 76-77 2.427422298414513E-5 0.0010680658113023855 0.0 0.17300643291183304 1.9419378387316104E-4 78-79 2.427422298414513E-5 0.001084248626625149 0.0 0.17698740548123282 1.9419378387316104E-4 80-81 2.427422298414513E-5 0.0010882943304558398 0.0 0.17867850968246163 1.982394877038519E-4 82-83 2.427422298414513E-5 0.0010923400342865309 0.0 0.17935818792601768 2.0228519153454275E-4 84-85 2.427422298414513E-5 0.0011085228496092942 0.0 0.18005404898489652 2.0228519153454275E-4 86-87 2.427422298414513E-5 0.0011327970725934393 0.0 0.180361522476029 2.0228519153454275E-4 88-89 2.427422298414513E-5 0.0011489798879162029 0.0 0.1805354877407487 2.063308953652336E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12195 0.0 42.109566 1 CTTATAC 13185 0.0 38.57266 1 GTATCAA 20745 0.0 34.60822 1 TATACAC 18350 0.0 30.545261 3 TCAACGC 24320 0.0 28.69014 4 ATCAACG 24325 0.0 28.599644 3 CAACGCA 24600 0.0 28.246199 5 TTATACA 19160 0.0 27.55486 2 AACGCAG 25710 0.0 27.122879 6 TATCAAC 26265 0.0 26.926779 2 ACGCAGA 30155 0.0 23.151978 7 CGCAGAG 30615 0.0 22.804111 8 ACATCTC 23925 0.0 21.670189 8 ACACATC 23745 0.0 21.661072 6 TACACAT 25575 0.0 21.65814 5 GTACATG 30350 0.0 20.02986 1 CACATCT 26150 0.0 19.700277 7 TACATGG 30060 0.0 19.537565 2 GCAGAGT 37270 0.0 18.809649 9 ACATGGG 30050 0.0 18.693577 3 >>END_MODULE