##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139984_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12380333 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25010837753718 33.0 31.0 34.0 30.0 34.0 2 32.46139736305962 34.0 31.0 34.0 31.0 34.0 3 32.55139009588837 34.0 31.0 34.0 31.0 34.0 4 36.052179614231704 37.0 35.0 37.0 35.0 37.0 5 35.84705419474581 37.0 35.0 37.0 35.0 37.0 6 35.86499280754403 37.0 35.0 37.0 35.0 37.0 7 35.88075506531206 37.0 35.0 37.0 35.0 37.0 8 35.862811767664084 37.0 35.0 37.0 35.0 37.0 9 37.689079041734985 39.0 37.0 39.0 35.0 39.0 10-11 37.54473264168257 39.0 37.0 39.0 35.0 39.0 12-13 37.574206404625784 39.0 37.0 39.0 35.0 39.0 14-15 38.822166374684755 40.0 38.0 41.0 35.5 41.0 16-17 38.775735717286445 40.0 38.0 41.0 35.0 41.0 18-19 38.80401427812968 40.0 38.0 41.0 35.0 41.0 20-21 38.84103112384078 40.0 38.0 41.0 35.0 41.0 22-23 38.79881291961531 40.0 38.0 41.0 35.0 41.0 24-25 38.78077907347139 40.0 38.0 41.0 35.0 41.0 26-27 38.67061952333802 40.0 38.0 41.0 35.0 41.0 28-29 38.587617982020745 40.0 38.0 41.0 34.5 41.0 30-31 38.46247625368545 40.0 38.0 41.0 34.0 41.0 32-33 38.398707483378956 40.0 38.0 41.0 34.0 41.0 34-35 38.33405631606515 40.0 38.0 41.0 34.0 41.0 36-37 38.26665743732303 40.0 38.0 41.0 34.0 41.0 38-39 38.184694408347326 40.0 38.0 41.0 34.0 41.0 40-41 38.1628269497936 40.0 38.0 41.0 34.0 41.0 42-43 38.10130274379209 40.0 38.0 41.0 33.0 41.0 44-45 38.05985204677561 40.0 37.5 41.0 33.0 41.0 46-47 37.95580169897747 40.0 37.0 41.0 33.0 41.0 48-49 37.935858757115554 40.0 37.0 41.0 33.0 41.0 50-51 37.86228580422215 40.0 37.0 41.0 33.0 41.0 52-53 37.678147857309234 39.5 37.0 41.0 33.0 41.0 54-55 37.522781248508394 39.0 36.0 40.5 32.5 41.0 56-57 37.33821274725325 39.0 36.0 40.0 32.0 41.0 58-59 37.11454783026742 39.0 35.5 40.0 31.5 41.0 60-61 36.94795191367309 39.0 35.0 40.0 31.0 41.0 62-63 36.77726877027686 38.0 35.0 40.0 31.0 41.0 64-65 36.50592882196712 38.0 35.0 40.0 31.0 41.0 66-67 36.30607385113825 37.5 35.0 40.0 31.0 41.0 68-69 36.022828732944006 37.0 34.5 39.5 31.0 41.0 70-71 35.70131337599676 36.5 34.0 39.0 30.5 41.0 72-73 35.448594611805724 36.0 34.0 39.0 30.0 40.0 74-75 35.093286379750694 35.5 34.0 38.5 30.0 40.0 76-77 33.041760690387484 34.0 31.0 36.0 27.5 38.5 78-79 34.262152879245264 35.0 33.5 37.0 29.5 39.0 80-81 34.271586173324025 35.0 34.0 36.5 30.0 39.0 82-83 34.043773467161635 35.0 34.0 36.0 30.0 37.5 84-85 33.78214551385284 35.0 33.0 36.0 29.0 37.0 86-87 33.561513475278105 35.0 33.0 35.0 29.0 37.0 88-89 33.36277183934388 35.0 33.0 35.0 29.0 36.0 90-91 33.322127152379025 35.0 33.0 35.0 29.0 36.0 92-93 33.245466330661415 35.0 33.0 35.0 29.0 36.0 94-95 33.16830797162988 35.0 33.0 35.0 29.0 35.5 96-97 33.19160525546751 35.0 33.0 35.0 29.0 35.0 98-99 33.28475392355556 34.0 33.0 35.0 29.5 35.0 100-101 32.047380985601954 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 28.0 20 99.0 21 380.0 22 1422.0 23 4444.0 24 11142.0 25 23539.0 26 42514.0 27 69048.0 28 102018.0 29 143591.0 30 192934.0 31 254809.0 32 340625.0 33 471343.0 34 695074.0 35 1082896.0 36 1874381.0 37 3029032.0 38 2969206.0 39 1057756.0 40 14049.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.49936031607551 20.486169475409103 13.871097005225948 24.143373203289443 2 14.925998835393099 21.22941552452181 41.404085558624 22.440500081461096 3 18.6968371727396 25.960527380739094 30.107593412215678 25.23504203430563 4 12.944720533267636 17.85323831659636 38.477780178550155 30.72426097158585 5 13.372332290631 37.76048475602147 35.52444599421453 13.342736959133001 6 30.284937981577624 37.79766407412825 18.6196217159347 13.297776228359423 7 26.703377041635314 32.259899632748166 23.189004689938468 17.847718635678056 8 24.215792055879625 37.26670040837374 21.203351188005872 17.314156347740763 9 25.56359360357265 16.761575621112467 21.2749608530853 36.399869922229584 10-11 24.478245447060303 26.74758600791477 28.720398314398704 20.05377023062622 12-13 25.051404164028067 24.13057578479393 28.939470062163174 21.87854998901482 14-15 22.184960159788943 25.523917736932884 26.392174005686925 25.89894809759125 16-17 21.971326822064864 28.64324727362812 27.12315657455594 22.262269329751078 18-19 22.031261194670613 28.04095818747363 28.541187058538732 21.386593559317024 20-21 22.742893727947102 27.27702387863148 28.336164771656748 21.643917621764672 22-23 22.474279406527884 27.21124962111444 28.193334716386794 22.12113625597088 24-25 22.272175342239052 27.281040481218888 28.338546128520292 22.108238048021768 26-27 22.27081679203594 27.462930550863955 28.19521478851506 22.071037868585037 28-29 22.11887852269792 27.60387816228444 28.202896688831625 22.074346626186017 30-31 22.49396481574178 27.431968072725667 28.108362475283442 21.965704636249107 32-33 22.298458045058275 27.568992995251335 28.0390279661685 22.093520993521885 34-35 22.33064962063326 27.565406575418315 28.120126996929486 21.983816807018943 36-37 22.326149686382074 27.51251880362683 28.080584324548795 22.080747185442302 38-39 22.192062078955548 27.56138856445556 28.1681797912053 22.07836956538359 40-41 22.42543687667435 27.371571268596327 28.079380975102953 22.12361087962637 42-43 22.2992377069563 27.469662560657216 27.94135115045546 22.289748581931022 44-45 22.33954078572393 27.658612824787664 27.795334885547014 22.206511503941393 46-47 22.473764675825837 27.520886660527456 27.521587490249654 22.483761173397056 48-49 22.42766177815912 27.602712613455978 27.561853870013266 22.407771738371647 50-51 22.340430444300306 27.688759651587013 27.54872635090994 22.422083553202736 52-53 22.50079624173899 27.62681571553695 27.439276792112654 22.4331112506114 54-55 22.496094958819484 27.527204177302966 27.429454670001796 22.547246193875754 56-57 22.56031340874517 27.64798300749562 27.348015641372854 22.443687942386354 58-59 22.434689788413408 27.756255776856364 27.423908620729666 22.385145814000563 60-61 22.562144612166644 27.74066815365565 27.351473966555908 22.345713267621793 62-63 22.58297276626005 27.7692487399558 27.236896589391606 22.410881904392543 64-65 22.462704137488814 27.726841946127344 27.303002882276967 22.50745103410687 66-67 22.552941225220366 27.71585683543634 27.17657431189248 22.554627627450813 68-69 22.50533181195712 27.684612463897412 27.274416770537357 22.53563895360811 70-71 22.50727652269348 27.453196046515366 27.31808940451781 22.721438026273344 72-73 22.572884220190065 27.496831164399133 27.29290715557025 22.637377459840554 74-75 22.433816664922812 27.65006071047067 27.272931889908435 22.64319073469808 76-77 22.53990396401924 27.63267071672723 27.154744744783287 22.67268057447024 78-79 22.531784743479157 27.661957151219475 27.09880204718426 22.707456058117106 80-81 22.496352482507973 27.694922380416497 27.151755867545514 22.656969269530016 82-83 22.584990992683633 27.592837540713106 27.30183275750277 22.520338709100493 84-85 22.723601977829365 27.604009207323582 27.136407463633837 22.535981351213216 86-87 22.45785436338377 27.63968276772203 27.253595771438082 22.648867097456122 88-89 22.560525211681416 27.56927875830008 27.207951945670494 22.662244084348007 90-91 22.562186766569248 27.604826667559866 27.23584817813754 22.59713838773335 92-93 22.604224956013823 27.57394514754553 27.224736587401416 22.597093309039227 94-95 22.420273047238158 27.714628778793948 27.249640395870173 22.615457778097724 96-97 22.434094513047853 27.72412547161091 27.28620405282282 22.55557596251841 98-99 22.66944735014305 28.304028283685952 27.326698841987223 21.699825524183776 100-101 26.89259829429482 35.3512597437173 27.86788163819741 9.888260323790465 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2456.0 1 2216.5 2 2927.5 3 4164.5 4 5682.0 5 9248.5 6 12259.5 7 14233.5 8 15452.0 9 15052.5 10 13812.0 11 12499.5 12 13103.5 13 16949.0 14 26015.5 15 38037.0 16 47634.5 17 53123.0 18 54343.0 19 52444.5 20 49871.5 21 48005.0 22 48995.5 23 55224.5 24 67525.0 25 85833.0 26 109226.5 27 134336.0 28 159594.0 29 185494.5 30 208405.0 31 230964.0 32 256091.0 33 280879.5 34 307461.0 35 335518.5 36 366401.5 37 394358.0 38 414818.0 39 434900.0 40 457554.0 41 478398.0 42 495053.5 43 512050.0 44 528995.5 45 544362.5 46 555551.5 47 562683.0 48 563907.0 49 557970.0 50 550438.0 51 536791.0 52 511940.5 53 482699.5 54 451720.0 55 417723.5 56 383528.5 57 345923.0 58 306835.5 59 267672.0 60 224809.5 61 183403.0 62 147060.5 63 115191.0 64 86987.0 65 64686.5 66 48441.0 67 36848.0 68 28221.5 69 20582.0 70 14773.5 71 10526.0 72 7212.0 73 4921.5 74 3437.5 75 2308.0 76 1537.0 77 1082.5 78 759.0 79 536.0 80 382.0 81 263.0 82 192.5 83 136.0 84 93.0 85 64.5 86 42.5 87 30.5 88 22.0 89 13.5 90 8.0 91 5.0 92 3.5 93 2.0 94 1.5 95 2.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001534692160542047 3 0.0016720067222747562 4 4.684849753233617E-4 5 1.6154654321495228E-5 6 4.846396296448569E-4 7 0.0 8 5.6541290125233306E-5 9 3.796343765551379E-4 10-11 5.048329475467259E-4 12-13 1.0500525308971898E-4 14-15 1.6154654321495228E-5 16-17 4.2002101235887594E-4 18-19 0.0 20-21 9.693239268523932E-5 22-23 1.2117873463468793E-5 24-25 0.0 26-27 8.892528897384218E-5 28-29 2.1438690663923483E-4 30-31 6.603866997632493E-4 32-33 3.494641373806915E-4 34-35 9.217249928260431E-4 36-37 1.6400868721214425E-4 38-39 1.7356343712633497E-4 40-41 2.1677763875290493E-4 42-43 0.0013038964548064862 44-45 3.612026228579728E-4 46-47 1.7628201200721276E-4 48-49 3.479548756459293E-4 50-51 0.0 52-53 4.7543226012276374E-4 54-55 7.229010981945297E-4 56-57 6.539448359384105E-4 58-59 5.605946015566977E-4 60-61 7.02150729534608E-4 62-63 6.58612525455374E-5 64-65 7.138892338031501E-4 66-67 0.0022211833144516694 68-69 0.0012200793832449915 70-71 2.2741012838241052E-4 72-73 0.0 74-75 1.2166412185878446E-4 76-77 0.0 78-79 8.113361973847826E-4 80-81 1.370898410364203E-4 82-83 1.069338644524513E-4 84-85 8.075583559824546E-4 86-87 2.7479817173478767E-4 88-89 2.789263033194127E-5 90-91 2.833761250173851E-5 92-93 1.1530539614264246E-4 94-95 5.284598220511369E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 365.0 20-21 1090.0 22-23 2458.0 24-25 4938.0 26-27 7602.0 28-29 14508.0 30-31 35347.0 32-33 41787.0 34-35 57195.0 36-37 88927.0 38-39 106599.0 40-41 104761.0 42-43 115858.0 44-45 135247.0 46-47 135053.0 48-49 129282.0 50-51 117992.0 52-53 115199.0 54-55 123944.0 56-57 128817.0 58-59 128586.0 60-61 126131.0 62-63 121987.0 64-65 126048.0 66-67 132625.0 68-69 131487.0 70-71 129263.0 72-73 123266.0 74-75 125301.0 76-77 122810.0 78-79 129602.0 80-81 132603.0 82-83 127102.0 84-85 126209.0 86-87 132913.0 88-89 138930.0 90-91 148228.0 92-93 153923.0 94-95 173189.0 96-97 261135.0 98-99 1022829.0 100-101 7099197.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.62115395141579 #Duplication Level Percentage of deduplicated Percentage of total 1 89.68205266735288 75.88998785443047 2 6.982214171682759 11.816860406874477 3 1.8293608048320302 4.644078668951314 4 0.7049793133159056 2.3862465201867455 5 0.3198125161985692 1.353145208441439 6 0.1671229967397501 0.8485284501561811 7 0.09828714152619951 0.5822019934173185 8 0.05858598322349666 0.39660908046004584 9 0.039900658208573844 0.30387957669274945 >10 0.11478996862224733 1.4755822352878103 >50 0.0022086106503821285 0.13130313001809082 >100 5.910196248732374E-4 0.08429982087596376 >500 6.27659528564713E-5 0.0413619560011568 >1k 3.1382069590537955E-5 0.04591509820628467 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.077327160747614E-6 8.077327160747614E-6 2 0.0 0.0 0.0 8.077327160747614E-6 8.077327160747614E-6 3 0.0 0.0 0.0 2.4231981482242846E-5 8.077327160747614E-6 4 0.0 8.077327160747614E-5 0.0 4.038663580373807E-5 8.077327160747614E-6 5 0.0 8.885059876822377E-5 0.0 4.038663580373807E-5 8.077327160747614E-6 6 5.6541290125233306E-5 8.885059876822377E-5 0.0 4.038663580373807E-5 8.077327160747614E-6 7 5.6541290125233306E-5 8.885059876822377E-5 0.0 4.038663580373807E-5 1.6154654321495228E-5 8 6.461861728598091E-5 1.05005253089719E-4 0.0 4.038663580373807E-5 1.6154654321495228E-5 9 6.461861728598091E-5 2.0193317901869037E-4 0.0 6.461861728598091E-5 1.6154654321495228E-5 10-11 6.865728086635471E-5 2.0193317901869037E-4 0.0 8.481193518784996E-5 1.6154654321495228E-5 12-13 7.269594444672853E-5 2.0193317901869037E-4 0.0 1.3327589815233563E-4 1.6154654321495228E-5 14-15 7.269594444672853E-5 2.786677870457927E-4 0.0 1.5346921605420468E-4 1.6154654321495228E-5 16-17 1.3731456173270945E-4 2.9886110494766176E-4 0.0 1.6154654321495228E-4 1.6154654321495228E-5 18-19 1.3731456173270945E-4 3.190544228495308E-4 0.0 1.7770119753644754E-4 1.6154654321495228E-5 20-21 1.3731456173270945E-4 3.473250679121474E-4 0.0 1.8577852469719514E-4 1.6154654321495228E-5 22-23 1.3731456173270945E-4 4.1194368519812833E-4 0.0 1.8981718827756894E-4 1.6154654321495228E-5 24-25 1.4135322531308325E-4 4.442529938411188E-4 0.0 2.3828115124205465E-4 1.6154654321495228E-5 26-27 1.4539188889345705E-4 4.6848497532336165E-4 0.0 3.35209077171026E-4 1.6154654321495228E-5 28-29 1.5346921605420468E-4 4.6848497532336165E-4 0.0 8.60235342619621E-4 1.6154654321495228E-5 30-31 1.5346921605420468E-4 5.169489382878473E-4 0.0 0.0030734229846644677 1.6154654321495228E-5 32-33 1.5346921605420468E-4 5.25026265448595E-4 0.0 0.007346329052699956 1.6154654321495228E-5 34-35 1.5346921605420468E-4 6.623408271813044E-4 0.0 0.012519857099158803 1.6154654321495228E-5 36-37 1.5346921605420468E-4 7.996553889140139E-4 0.0 0.02067391886793352 1.6154654321495228E-5 38-39 1.5346921605420468E-4 8.279260339766304E-4 0.0 0.03242239122324092 2.4231981482242846E-5 40-41 1.5346921605420468E-4 8.885059876822376E-4 0.0 0.044449531365594125 2.4231981482242846E-5 42-43 1.5346921605420468E-4 9.248539599056018E-4 0.0 0.054804664785672565 2.4231981482242846E-5 44-45 1.5750787963457848E-4 0.0010379365401560685 0.0 0.06635524262554165 2.4231981482242846E-5 46-47 1.6154654321495228E-4 0.0011146711481831708 0.0 0.07817237226171542 2.4231981482242846E-5 48-49 1.6154654321495228E-4 0.0011267871389242924 0.0 0.08919792383613592 2.827064506261665E-5 50-51 1.6154654321495228E-4 0.0012277537284336375 0.0 0.09980345439819752 3.2309308642990457E-5 52-53 1.6154654321495228E-4 0.0012439083827551327 0.0 0.10946797634603206 3.2309308642990457E-5 54-55 1.6154654321495228E-4 0.0012479470463355065 0.0 0.11943539806239462 3.2309308642990457E-5 56-57 1.6154654321495228E-4 0.0012519857099158804 0.0 0.1291645386275151 4.4425299384111885E-5 58-59 1.6154654321495228E-4 0.0012519857099158804 0.0 0.1383080729734814 4.846396296448569E-5 60-61 1.8981718827756894E-4 0.0012762176913981233 0.0 0.1469911996712851 4.846396296448569E-5 62-63 2.10010506179438E-4 0.0012842950185588708 0.0 0.15507660415919344 4.846396296448569E-5 64-65 2.10010506179438E-4 0.0013973775988093374 0.0 0.1630085394310476 4.846396296448569E-5 66-67 2.10010506179438E-4 0.0014054549259700849 0.0 0.1711666398634027 4.846396296448569E-5 68-69 2.10010506179438E-4 0.0014216095802915803 0.0 0.17922377370624842 4.846396296448569E-5 70-71 2.180878333401856E-4 0.0014418028981934491 0.0 0.18639240156141196 4.846396296448569E-5 72-73 2.5847446914392365E-4 0.001445841561773823 0.0 0.191751708132568 4.846396296448569E-5 74-75 2.5847446914392365E-4 0.0014700735432560657 0.0 0.19606096217282687 4.846396296448569E-5 76-77 2.5847446914392365E-4 0.0014983441883186827 0.0 0.19971191404948477 4.846396296448569E-5 78-79 2.5847446914392365E-4 0.001510460179059804 0.0 0.20324170601873148 4.846396296448569E-5 80-81 2.5847446914392365E-4 0.001510460179059804 0.0 0.20487332610520248 4.846396296448569E-5 82-83 2.5847446914392365E-4 0.001530653496961673 0.0 0.2055195122780623 4.846396296448569E-5 84-85 2.5847446914392365E-4 0.0015589241420242896 0.0 0.2061980077595651 4.846396296448569E-5 86-87 2.705904598850451E-4 0.0015750787963457848 0.0 0.20646859821945016 4.846396296448569E-5 88-89 2.827064506261665E-4 0.0016235427593102706 0.0 0.20657764213612026 4.846396296448569E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13005 0.0 43.17843 1 GTATCAA 21565 0.0 33.76237 1 ATCAACG 25520 0.0 27.537113 3 TCAACGC 25630 0.0 27.467432 4 CAACGCA 26115 0.0 26.989124 5 TATCAAC 27355 0.0 26.251781 2 AACGCAG 27285 0.0 25.968704 6 ACGCAGA 31790 0.0 22.197014 7 CGCAGAG 32395 0.0 21.731188 8 GTACATG 35605 0.0 21.54549 1 TACATGG 35000 0.0 21.360182 2 ACATGGG 35520 0.0 20.345812 3 CATGGGG 26115 0.0 18.512281 4 GCAGAGT 39340 0.0 17.85258 9 GAGTACT 20710 0.0 16.83554 12-13 AGAGTAC 34830 0.0 16.777561 10-11 CAGAGTA 38065 0.0 16.38824 10-11 TATACCG 1070 0.0 16.302813 5 GTGGTAT 7170 0.0 16.161644 1 TGGTATC 6690 0.0 15.33456 2 >>END_MODULE