##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139983_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 33218498 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.98138892372557 31.0 31.0 33.0 28.0 34.0 2 31.15931232050287 31.0 31.0 34.0 28.0 34.0 3 31.176910075825823 31.0 31.0 34.0 27.0 34.0 4 35.03680717291914 35.0 35.0 37.0 32.0 37.0 5 34.796206017502655 35.0 35.0 37.0 32.0 37.0 6 34.857552499815014 35.0 35.0 37.0 32.0 37.0 7 34.74679418076037 35.0 35.0 37.0 31.0 37.0 8 34.7199445622135 35.0 35.0 37.0 30.0 37.0 9 36.20701583196206 38.0 35.0 39.0 32.0 39.0 10-11 36.07528446951454 38.0 35.0 39.0 30.5 39.0 12-13 36.01202637157165 37.0 35.0 39.0 30.0 39.0 14-15 36.95234012386713 38.0 36.0 40.0 31.0 41.0 16-17 36.91580757203411 38.0 36.0 40.0 31.0 41.0 18-19 36.94305966211958 38.5 36.0 40.0 31.0 41.0 20-21 36.918581866605635 39.0 36.0 40.0 31.0 41.0 22-23 36.81146918100428 39.0 35.5 40.0 30.5 41.0 24-25 36.679964947293 38.0 35.0 40.0 30.0 41.0 26-27 36.40921519133006 38.0 35.0 40.0 30.0 41.0 28-29 36.20459877289434 38.0 34.5 40.0 29.5 41.0 30-31 36.004435881936224 38.0 34.0 40.0 29.0 41.0 32-33 35.76784369532533 38.0 34.0 40.0 28.5 41.0 34-35 35.57961333503977 38.0 34.0 40.0 27.0 41.0 36-37 35.400378597836806 38.0 34.0 40.0 27.0 41.0 38-39 35.207016030601984 38.0 33.0 40.0 27.0 41.0 40-41 35.0410370223461 37.5 33.0 40.0 26.5 41.0 42-43 34.85603802811973 37.0 33.0 40.0 26.0 40.5 44-45 34.65675243558697 37.0 33.0 39.5 26.0 40.0 46-47 34.95840404685437 37.5 33.0 39.5 26.5 40.5 48-49 35.36402065705162 38.0 33.0 40.0 27.0 41.0 50-51 35.377138363088136 38.0 33.0 40.0 27.0 41.0 52-53 35.26938221509353 38.0 33.0 40.0 27.0 41.0 54-55 35.14122120925394 37.0 33.0 40.0 27.0 41.0 56-57 34.982019514329274 37.0 33.0 40.0 26.5 41.0 58-59 34.7921381205237 37.0 33.0 40.0 26.0 41.0 60-61 34.592037607327285 37.0 32.0 39.0 26.0 41.0 62-63 34.36298748183072 36.0 32.0 39.0 26.0 40.0 64-65 34.047965466430284 36.0 31.5 39.0 26.0 40.0 66-67 33.77224024736153 35.5 31.0 39.0 26.0 40.0 68-69 33.50278284044727 35.0 31.0 38.0 25.5 40.0 70-71 33.2310900127103 35.0 31.0 38.0 25.0 40.0 72-73 32.9353982975624 34.5 30.5 37.5 25.0 39.5 74-75 32.599289648053315 34.0 30.0 37.0 25.0 39.0 76-77 31.025681663923308 32.5 28.5 35.5 23.0 38.0 78-79 32.1429666808868 34.0 30.0 36.0 25.0 39.0 80-81 32.24083007808269 34.0 30.0 36.0 25.0 38.0 82-83 32.01557589282923 34.0 30.0 35.5 25.0 37.0 84-85 31.796366876447458 34.0 30.0 35.0 25.0 37.0 86-87 31.579695965580896 34.0 30.0 35.0 25.0 36.0 88-89 31.385378024605235 34.0 30.0 35.0 25.0 36.0 90-91 31.286509021963184 33.5 30.0 35.0 25.0 36.0 92-93 31.247851841079395 33.0 30.0 35.0 25.0 35.0 94-95 31.27900216385104 33.0 30.0 35.0 25.0 35.0 96-97 31.433493984219133 33.0 30.0 35.0 25.0 35.0 98-99 31.70921666185606 33.0 30.0 35.0 25.5 35.0 100 30.07411568480442 31.0 27.0 34.0 23.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 0.0 13 0.0 14 1.0 15 2.0 16 0.0 17 2.0 18 9.0 19 118.0 20 933.0 21 5599.0 22 25359.0 23 79627.0 24 189975.0 25 367944.0 26 603618.0 27 875686.0 28 1154190.0 29 1423784.0 30 1674953.0 31 1927625.0 32 2217191.0 33 2562047.0 34 3004784.0 35 3567168.0 36 4288607.0 37 4720312.0 38 3469286.0 39 1046880.0 40 12796.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.3484918553512 23.329618937015155 16.050791941285244 22.271097266348406 2 15.348126909082517 23.994050891911176 39.89474909907247 20.763073099933845 3 18.149625548993818 28.309675530784084 32.190471104382866 21.350227815839233 4 13.107508726915796 20.556859079764422 39.10582460481201 27.229807588507775 5 12.106628060064606 39.285773848052976 36.591675517658864 12.015922574223554 6 28.05122916755598 40.861212328143196 18.752497478964884 12.335061025335945 7 24.37692095530629 34.004168400389446 24.641144220307613 16.977766423996655 8 23.466434274060195 38.1508880985528 21.63243503664735 16.750242590739653 9 25.037932178631316 16.41717214306318 21.71723417476612 36.82766150353938 10-11 23.264895962484516 27.61140344154031 30.118211545868206 19.00548905010696 12-13 24.127614727824334 25.333988163681052 30.062074713760346 20.476322394734268 14-15 21.342927796345965 26.757460916107984 27.613250864024124 24.286360423521927 16-17 20.695295454787317 29.75527042223752 28.326609132613406 21.22282499036176 18-19 20.73992779565169 28.76641803611951 30.170751549332543 20.322902618896254 20-21 21.57651505423819 27.977842283313308 30.04541463339 20.4002280290585 22-23 21.28840705402095 27.940979864594123 29.899863144425282 20.870749936959644 24-25 21.113395963454977 28.077239960232664 29.9714007308836 20.837963345428758 26-27 21.1442490280225 28.182088144825684 29.81093037907594 20.862732448075878 28-29 21.118606644416424 28.281443633254817 29.790228068524215 20.809721653804548 30-31 21.394136005560426 28.128993407279573 29.685558191478677 20.79131239568132 32-33 21.282925118930844 28.302630280490792 29.530708434157187 20.883736166421173 34-35 21.34514495689303 28.285945915437587 29.594711879073206 20.774197248596177 36-37 21.29717280224369 28.2495070529929 29.58210094989044 20.87121919487297 38-39 21.218213764588935 28.30724461097862 29.57737306258362 20.89716856184882 40-41 21.449899991426378 28.241557945910994 29.368052760510032 20.940489302152592 42-43 21.376039414699967 28.360320517151937 29.13990387181386 21.123736196334235 44-45 21.47453802437253 28.512405610274516 28.8429993958163 21.17005696953665 46-47 21.55920100358884 28.458679953734716 28.54961530060793 21.43250374206852 48-49 21.463105593090877 28.59568995411863 28.578706503751206 21.36249794903929 50-51 21.464963227894447 28.72273663364294 28.386439223224496 21.425860915238122 52-53 21.531454334722564 28.65453915844811 28.351675175836277 21.462331330993045 54-55 21.591176585501476 28.515767995966197 28.4211962893273 21.47185912920503 56-57 21.586715689257158 28.561554040057946 28.340264124833382 21.511466145851514 58-59 21.51066156173151 28.632325828708822 28.399929763879232 21.457082845680436 60-61 21.586935162069334 28.672440007430378 28.35818446865275 21.38244036184754 62-63 21.517875665808617 28.731315466896795 28.285573478821608 21.465235388472983 64-65 21.503916504887346 28.72518646725224 28.249822324784763 21.521074703075655 66-67 21.54974333225316 28.791879908023166 28.066507854268597 21.591868905455076 68-69 21.526332977473224 28.770600816632907 28.152212737959566 21.5508534679343 70-71 21.55352564612248 28.47586441759381 28.240494816581908 21.73011511970181 72-73 21.61749137753095 28.492205696624207 28.19936342888198 21.690939496962862 74-75 21.495944594570346 28.641299221647316 28.14502559706391 21.717730586718428 76-77 21.626303271336013 28.56880387559765 28.132395419764684 21.672497433301654 78-79 21.63456012869056 28.63333654766657 28.051512923578798 21.68059040006407 80-81 21.591207787184274 28.574068169813387 28.11407299256746 21.720651050434878 82-83 21.652234011458333 28.521116161702103 28.243248341853942 21.583401484985618 84-85 21.76933935102862 28.514795714757895 28.16406738915478 21.5517975450587 86-87 21.556450062130754 28.542727598320866 28.298496759298718 21.602325580249662 88-89 21.65932483404321 28.504441808387384 28.29986101023242 21.53637234733699 90-91 21.677332773620975 28.495364131841892 28.439652048545945 21.387651045991188 92-93 21.682392173625 28.462494685869792 28.408645720482472 21.446467420022728 94-95 21.374820387821323 28.48986029066326 28.614139027467655 21.521180294047763 96-97 21.33278445620177 28.69326497406029 28.767121235145616 21.206829334592328 98-99 22.302341451246836 30.64618414902542 29.10340100118744 17.948073398540306 100 21.983048029155743 31.212434539970896 22.968871871823858 23.83564555904951 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9358.0 1 8155.5 2 11249.5 3 16384.0 4 20941.5 5 32734.5 6 44097.0 7 54484.5 8 62922.5 9 63451.5 10 57652.5 11 50009.0 12 51808.0 13 67367.0 14 109244.0 15 170862.0 16 219319.0 17 243153.0 18 251277.5 19 249273.5 20 239108.0 21 223180.5 22 210699.0 23 216501.5 24 247212.0 25 304022.0 26 379816.5 27 464024.0 28 556741.5 29 661729.5 30 760749.5 31 854675.0 32 953537.5 33 1042952.5 34 1124794.0 35 1190559.5 36 1250702.5 37 1301885.5 38 1311735.5 39 1303687.5 40 1309541.5 41 1311450.5 42 1303734.0 43 1301722.0 44 1296841.0 45 1291948.0 46 1285731.0 47 1274912.0 48 1256526.0 49 1224203.5 50 1189480.5 51 1143542.0 52 1078700.0 53 1007219.5 54 933887.5 55 855234.5 56 776903.5 57 699095.0 58 619283.5 59 541904.5 60 460646.0 61 378667.5 62 303388.0 63 238195.5 64 183836.0 65 141259.0 66 109170.0 67 85625.0 68 67722.0 69 51435.0 70 38786.0 71 29898.0 72 22684.5 73 17233.0 74 13141.0 75 10005.5 76 7569.5 77 5540.5 78 4062.5 79 3069.5 80 2265.0 81 1644.0 82 1243.5 83 913.5 84 678.0 85 519.5 86 398.5 87 310.5 88 219.5 89 158.5 90 127.5 91 99.0 92 78.5 93 48.5 94 23.0 95 14.0 96 11.0 97 9.0 98 4.0 99 1.0 100 1.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.10344838589631596 3 0.0 4 1.2041483633606794E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.005274169831519775 14-15 7.270045743790101E-4 16-17 0.0016481780723499298 18-19 0.0 20-21 5.569758691107912E-5 22-23 1.8520210488365605E-4 24-25 2.8170158543610636E-4 26-27 3.9198553018583326E-5 28-29 0.009053447500440334 30-31 0.0025608247657695673 32-33 0.0069527814286069614 34-35 0.005836910868849816 36-37 0.008637053801583944 38-39 0.003172367879220097 40-41 3.096287640910889E-5 42-43 2.1998105042667743E-4 44-45 0.0014583857653989632 46-47 4.42761568244911E-4 48-49 4.9856694971706246E-5 50-51 0.0 52-53 2.7794378560776664E-5 54-55 9.887093511718472E-6 56-57 0.0 58-59 8.797906742927281E-4 60-61 0.0 62-63 0.0 64-65 0.0 66-67 3.231906107787898E-4 68-69 7.547447903473838E-4 70-71 0.0013772031188686936 72-73 5.30943030252255E-4 74-75 1.9689010226026123E-4 76-77 0.0038636571554233174 78-79 0.001959143917183068 80-81 1.2236533830481042E-4 82-83 1.778771148996038E-5 84-85 4.588661791052508E-4 86-87 0.0010119648109661022 88-89 8.815144653585384E-5 90-91 2.1536233366624763E-6 92-93 2.2183803325676E-6 94-95 2.2998821908346567E-6 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2081.0 20-21 6788.0 22-23 12745.0 24-25 24944.0 26-27 30581.0 28-29 46565.0 30-31 83655.0 32-33 107870.0 34-35 153005.0 36-37 185488.0 38-39 210112.0 40-41 239697.0 42-43 285414.0 44-45 349645.0 46-47 320719.0 48-49 274834.0 50-51 245230.0 52-53 234231.0 54-55 257235.0 56-57 292419.0 58-59 305579.0 60-61 313625.0 62-63 328177.0 64-65 348278.0 66-67 375147.0 68-69 385000.0 70-71 392671.0 72-73 389621.0 74-75 401509.0 76-77 357368.0 78-79 406759.0 80-81 440689.0 82-83 451349.0 84-85 473738.0 86-87 521123.0 88-89 585862.0 90-91 658091.0 92-93 760959.0 94-95 941982.0 96-97 1679926.0 98-99 2534785.0 100-101 1.6803002E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.15323559670112 #Duplication Level Percentage of deduplicated Percentage of total 1 88.58964540236745 71.89336364766537 2 7.192812356987277 11.674399916189033 3 2.0525835572302427 4.997213910054622 4 0.8779562858663387 2.849959732420627 5 0.4358558446053081 1.768555602172686 6 0.2703912713315748 1.3165875927397699 7 0.1627657077841643 0.9246274681610468 8 0.10827514269033625 0.7029502531212232 9 0.06961323464917246 0.5084405308919457 >10 0.23571110543038798 2.882290138591125 >50 0.003455510072617827 0.1854706893285548 >100 8.134767065640964E-4 0.12344358725208478 >500 6.111478387050548E-5 0.034427510467407836 >1k 5.998949465171524E-5 0.1382694209445058 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.0103709084016985E-6 3.0103709084016985E-6 2 0.0 1.5051854542008492E-5 0.0 6.020741816803397E-6 6.020741816803397E-6 3 0.0 2.107259635881189E-5 0.0 9.031112725205095E-6 6.020741816803397E-6 4 0.0 6.622815998483737E-5 0.0 1.806222545041019E-5 1.5051854542008492E-5 5 0.0 6.923853089323907E-5 0.0 3.0103709084016984E-5 1.5051854542008492E-5 6 4.214519271762378E-5 6.923853089323907E-5 0.0 3.0103709084016984E-5 3.0103709084016984E-5 7 4.214519271762378E-5 6.923853089323907E-5 0.0 3.0103709084016984E-5 3.0103709084016984E-5 8 4.214519271762378E-5 7.525927271004246E-5 0.0 3.0103709084016984E-5 3.913482180922208E-5 9 4.214519271762378E-5 1.4750817451168323E-4 0.0 3.913482180922208E-5 4.5155563626025474E-5 10-11 4.214519271762378E-5 1.4750817451168323E-4 0.0 4.6660749080226325E-5 4.8165934534427177E-5 12-13 4.214519271762378E-5 1.4901335996588406E-4 0.0 6.472297453063652E-5 5.117630544282887E-5 14-15 4.214519271762378E-5 1.8513781086670444E-4 0.0 8.429038543524756E-5 7.826964361844416E-5 16-17 5.418667635123057E-5 1.89653367229307E-4 0.0 1.1890965088186709E-4 9.633186906885435E-5 18-19 5.418667635123057E-5 2.1373633449652058E-4 0.0 1.7911706904990106E-4 1.09878538156662E-4 20-21 5.418667635123057E-5 2.4082967267213587E-4 0.0 2.2728300358432823E-4 1.1890965088186709E-4 22-23 5.569186180543142E-5 2.814696799355588E-4 0.0 4.2596748353884034E-4 1.3847706178647814E-4 24-25 5.719704725963227E-5 3.145837599279775E-4 0.0 0.001089754268841415 1.5202373087428578E-4 26-27 5.719704725963227E-5 3.3114079992418684E-4 0.0 0.0025994552794048665 1.5653928723688833E-4 28-29 5.719704725963227E-5 3.341511708325885E-4 0.0 0.008821891947071177 1.5653928723688833E-4 30-31 5.8702232713833116E-5 3.6576006537080634E-4 0.0 0.012691723749821561 1.5804447269108916E-4 32-33 6.321778907643566E-5 3.702756217334089E-4 0.0 0.019811250948191576 1.7309632723309766E-4 34-35 6.622815998483737E-5 4.1392599990523353E-4 0.0 0.02844499471348765 2.0018966540871294E-4 36-37 6.622815998483737E-5 4.620919344396607E-4 0.0 0.043761761895435486 2.047052217713155E-4 38-39 6.622815998483737E-5 4.8466971625267345E-4 0.0 0.0859912449984945 2.107259635881189E-4 40-41 6.773334543903821E-5 5.478875053291091E-4 0.0 0.1277526154252971 2.1373633449652058E-4 42-43 6.923853089323907E-5 5.539082471459126E-4 0.0 0.15673345616048023 2.1373633449652058E-4 44-45 7.375408725584162E-5 6.126104798597457E-4 0.0 0.19590590760605733 2.1825189085912313E-4 46-47 7.826964361844416E-5 6.637867853025745E-4 0.0 0.23639840669496856 2.2577781813012737E-4 48-49 7.826964361844416E-5 6.68302341665177E-4 0.0 0.2725017849994301 2.3480893085533246E-4 50-51 8.730075634364926E-5 7.074371634743992E-4 0.0 0.308832446307476 2.4233485812633673E-4 52-53 9.031112725205095E-5 7.164682761996043E-4 0.0 0.39675333905825605 2.603970835767469E-4 54-55 9.031112725205095E-5 7.315201307416127E-4 0.0 0.5020079474996131 2.754489381187554E-4 56-57 9.332149816045265E-5 7.435616143752195E-4 0.0 0.6066439247192934 2.814696799355588E-4 58-59 9.332149816045265E-5 7.450667998294203E-4 0.0 0.6675602852362561 2.874904217523622E-4 60-61 9.633186906885435E-5 7.571082834630272E-4 0.0 0.7137273334875045 2.905007926607639E-4 62-63 1.09878538156662E-4 7.67644581642433E-4 0.0 0.7479687973851196 3.0404746174857156E-4 64-65 1.1439409451926454E-4 8.203260725394628E-4 0.0 0.7562653796086747 3.0404746174857156E-4 66-67 1.1589927997346539E-4 8.218312579936636E-4 0.0 0.7629694756216852 3.1006820356537494E-4 68-69 1.1740446542766623E-4 8.398934834440738E-4 0.0 0.7696916338601463 3.175941308363792E-4 70-71 1.2041483633606793E-4 8.564505234402832E-4 0.0 0.7753857504333881 3.3114079992418684E-4 72-73 1.3245631996967473E-4 8.639764507112874E-4 0.0 0.7800442994141397 3.642548799166055E-4 74-75 1.3245631996967473E-4 8.985957161579069E-4 0.0 0.783703405253302 3.642548799166055E-4 76-77 1.339615054238756E-4 9.332149816045265E-4 0.0 0.7868823569325741 3.642548799166055E-4 78-79 1.3546669087807642E-4 9.48266836146535E-4 0.0 0.7892740966192993 3.642548799166055E-4 80-81 1.3697187633227728E-4 9.512772070549367E-4 0.0 0.7901636612227321 3.702756217334089E-4 82-83 1.3847706178647814E-4 9.527823925091375E-4 0.0 0.7910637621243441 3.9736895990902417E-4 84-85 1.3847706178647814E-4 9.693394325053469E-4 0.0 0.7915469266551426 3.9736895990902417E-4 86-87 1.3847706178647814E-4 9.813809161389536E-4 0.0 0.7918133444805362 3.9736895990902417E-4 88 1.4449780360328152E-4 0.0010024535124977655 0.0 0.7918299015205323 4.0640007263422926E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 45740 0.0 52.225483 1 GTATCAA 79420 0.0 33.626686 1 ATCAACG 102955 0.0 25.419392 3 TCAACGC 103475 0.0 25.295647 4 CAACGCA 105150 0.0 24.896627 5 TATCAAC 107260 0.0 24.640156 2 AACGCAG 107900 0.0 24.373215 6 ACGCAGA 124705 0.0 21.02429 7 CGCAGAG 125380 0.0 20.88472 8 GTGGTAT 18910 0.0 19.719032 1 AGAGTAC 130835 0.0 18.259449 10-11 TGGTATC 19145 0.0 18.158342 2 GAGTACT 92660 0.0 18.133415 12-13 GCAGAGT 142590 0.0 18.007627 9 CAGAGTA 140420 0.0 17.395882 10-11 GTACATG 89090 0.0 17.174053 1 TACATGG 87520 0.0 17.141665 2 AGTACTT 101125 0.0 16.431494 12-13 ACATGGG 89390 0.0 16.32656 3 GTACTTT 104710 0.0 16.038969 14-15 >>END_MODULE