##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139982_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25064795 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.232649100062456 31.0 31.0 34.0 30.0 34.0 2 31.40781618201944 31.0 31.0 34.0 30.0 34.0 3 31.440425425382493 31.0 31.0 34.0 28.0 34.0 4 35.27293560549767 37.0 35.0 37.0 33.0 37.0 5 35.04394733729121 37.0 35.0 37.0 32.0 37.0 6 35.08173711374859 37.0 35.0 37.0 32.0 37.0 7 34.967802609197484 37.0 35.0 37.0 32.0 37.0 8 34.941840856867174 37.0 35.0 37.0 32.0 37.0 9 36.454875573488636 38.0 35.0 39.0 32.0 39.0 10-11 36.351075362874504 38.0 35.0 39.0 32.0 39.0 12-13 36.28450932872182 38.0 35.0 39.0 32.0 39.0 14-15 37.300777445018 39.0 36.0 41.0 32.0 41.0 16-17 37.278124417135665 39.0 36.0 41.0 32.0 41.0 18-19 37.30602356811616 39.0 36.0 41.0 31.5 41.0 20-21 37.28750575878711 39.0 36.0 41.0 31.0 41.0 22-23 37.19253696218941 39.0 36.0 40.5 31.0 41.0 24-25 37.07869044981045 39.0 36.0 40.0 31.0 41.0 26-27 36.84450075794312 39.0 36.0 40.0 30.5 41.0 28-29 36.66192160702589 39.0 35.0 40.0 30.0 41.0 30-31 36.4894572690496 38.0 35.0 40.0 30.0 41.0 32-33 36.27943469132967 38.0 35.0 40.0 30.0 41.0 34-35 36.10883787757136 38.0 34.5 40.0 29.5 41.0 36-37 35.95650192932076 38.0 34.0 40.0 29.0 41.0 38-39 35.779947372614544 38.0 34.0 40.0 28.5 41.0 40-41 35.63378034642432 38.0 34.0 40.0 28.0 41.0 42-43 35.472629234564806 38.0 33.5 40.0 27.0 41.0 44-45 35.300121085723646 38.0 33.0 40.0 27.0 41.0 46-47 35.60180020807893 38.0 33.5 40.0 27.5 41.0 48-49 35.99131330574808 38.0 34.0 40.0 29.0 41.0 50-51 36.00534054080978 38.0 34.0 40.0 28.5 41.0 52-53 35.916299301725054 38.0 34.0 40.0 28.0 41.0 54-55 35.804377371641564 38.0 34.0 40.0 28.0 41.0 56-57 35.65893341277986 38.0 34.0 40.0 28.0 41.0 58-59 35.484031534410335 38.0 33.5 40.0 28.0 41.0 60-61 35.30065536551115 37.0 33.0 40.0 28.0 41.0 62-63 35.089861747046285 37.0 33.0 40.0 27.0 41.0 64-65 34.796504071314246 36.5 32.5 39.5 26.5 41.0 66-67 34.53507420959373 36.0 32.0 39.0 26.0 40.5 68-69 34.27760245433424 36.0 32.0 39.0 26.0 40.0 70-71 34.012517039682585 35.0 32.0 39.0 26.0 40.0 72-73 33.727108386653725 35.0 31.0 38.0 26.0 40.0 74-75 33.40286934136131 35.0 31.0 37.5 26.0 39.5 76-77 31.702159113101846 33.0 29.5 35.5 24.0 38.5 78-79 32.79308195505091 34.0 31.0 36.0 26.0 39.0 80-81 32.8714812436163 34.0 31.0 36.0 26.0 39.0 82-83 32.64146564859981 34.0 31.0 36.0 26.0 37.5 84-85 32.415126086783204 34.0 31.0 35.5 26.0 37.0 86-87 32.197764584804034 34.0 31.0 35.0 26.0 37.0 88-89 32.008588992222684 34.0 31.0 35.0 26.0 36.0 90-91 31.90157419439733 34.0 31.0 35.0 25.5 36.0 92-93 31.84815122236943 34.0 31.0 35.0 25.0 36.0 94-95 31.854733745087206 34.0 31.0 35.0 26.0 35.0 96-97 31.963546338583967 34.0 31.0 35.0 26.0 35.0 98-99 32.17426703004338 34.0 31.0 35.0 26.5 35.0 100 30.59763660079051 32.0 29.0 34.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 3.0 18 8.0 19 55.0 20 496.0 21 3129.0 22 14087.0 23 46260.0 24 112120.0 25 219303.0 26 366517.0 27 539357.0 28 720944.0 29 902332.0 30 1076291.0 31 1259166.0 32 1466832.0 33 1728015.0 34 2071522.0 35 2516810.0 36 3185191.0 37 3920749.0 38 3512501.0 39 1368689.0 40 34417.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.04651923145591 22.44625579423251 15.356969805657696 23.15025516865388 2 14.530969060278833 23.028925967614494 41.091429340414024 21.34867563169265 3 17.462093745430593 27.98710701603584 32.006956370478996 22.543842868054575 4 12.309843287317781 19.80823136458331 39.86634316900439 28.015582179094523 5 12.06996905420531 39.02586476370543 36.75785898109281 12.146307200996457 6 28.028415951536807 40.51270317590868 19.09314239354441 12.365738479010101 7 24.44306446551827 33.83324300079055 24.712362498875414 17.011330034815764 8 23.290212427430586 38.10471220690215 21.82307894399296 16.781996421674307 9 24.892994337276647 16.662877154989697 21.913572403045787 36.530556104687875 10-11 23.11288203234856 27.56717938447133 30.280143922980418 19.039794660199693 12-13 24.017006730658856 25.24546478604175 30.136861877039607 20.600666606259786 14-15 21.234423508998642 26.705766276481807 27.64638914262198 24.413421071897574 16-17 20.687149893156857 29.754350338666775 28.32353314451507 21.2349666236613 18-19 20.679929758053078 28.86748126206498 30.060104221877737 20.392484758004205 20-21 21.54461641145062 28.072711137271156 29.884578422107204 20.49809402917102 22-23 21.21588057393996 27.99793557686868 29.784014768227795 21.002169080963558 24-25 21.026545997404558 28.199839495519935 29.831496644792054 20.942117862283453 26-27 21.054055505668597 28.349811343796272 29.66093415915168 20.93519899138345 28-29 21.02573078837776 28.422874610889302 29.658688189628112 20.892706411104825 30-31 21.38878307597033 28.19233592848193 29.557944640389678 20.860936355158064 32-33 21.18003839158505 28.37981483720901 29.47250150066577 20.967645270540167 34-35 21.248313776213593 28.364685926135717 29.48400524503551 20.90299505261518 36-37 21.211775312608342 28.367998474964207 29.464589765230304 20.955636447197147 38-39 21.102828057317826 28.42261679801951 29.487333752896383 20.987221391766283 40-41 21.331074412074916 28.309690636794638 29.362938660153056 20.996296290977398 42-43 21.282610572743188 28.41534112036989 29.115342791052818 21.186705515834102 44-45 21.36916382199913 28.591343624747605 28.84484114746657 21.194651405786693 46-47 21.452304287522004 28.492993839112724 28.569627335505704 21.48507453785957 48-49 21.39814890933831 28.605373095431148 28.59836746124686 21.39811053398368 50-51 21.33653111865111 28.726360829419995 28.49454383634172 21.44256421558718 52-53 21.45033739957391 28.62809774370641 28.43947398859533 21.482090868124352 54-55 21.471566368851715 28.536641170007123 28.480166396567864 21.5116260645733 56-57 21.491049255944613 28.584440408126877 28.407970404885198 21.51653993104331 58-59 21.404563672175307 28.668424883233456 28.46792182721491 21.45908961737632 60-61 21.473328697707355 28.714329076417023 28.413314987094022 21.3990272387816 62-63 21.375928190086775 28.79638220295756 28.37485570082418 21.45283390613148 64-65 21.3946566788845 28.76757452994065 28.296808255321903 21.540960535852946 66-67 21.458327073654125 28.830715215224657 28.129409871217142 21.581547839904076 68-69 21.438986972924255 28.798807880305528 28.187615526060732 21.57458962070948 70-71 21.4222896839056 28.487113879469746 28.314900539532452 21.775695897092202 72-73 21.495747384554363 28.49957938502324 28.28550761923197 21.719165611190427 74-75 21.397444474814943 28.654507262235107 28.201524874274487 21.74652338867546 76-77 21.5475517198736 28.59242372191225 28.154321308044473 21.705703250169684 78-79 21.510328629876906 28.632458221412175 28.1174304120422 21.739782736668715 80-81 21.505233539529296 28.59827816004559 28.124568947003 21.771919353422106 82-83 21.55626859443264 28.566427687040484 28.26489543125427 21.612408287272604 84-85 21.649849649570985 28.536860154756695 28.22626189371053 21.587028301961787 86-87 21.441514035796263 28.616433669164948 28.312598006935595 21.629454288103194 88-89 21.5140740778245 28.594570118115996 28.304810987221135 21.586544816838373 90-91 21.586080299227525 28.525941986778125 28.435374969240033 21.45260274475431 92-93 21.63021312708687 28.41070030920911 28.42526335515364 21.533823208550384 94-95 21.3493089424537 28.44344454150553 28.62782982088879 21.579416695151984 96-97 21.270863143519836 28.62706209701394 28.79636909559473 21.30570566387149 98-99 22.292310117439797 30.565083105925606 29.10179660660401 18.04081017003058 100 21.819754017321372 31.186579551962428 22.95774509345298 24.035921337263222 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5641.0 1 5044.5 2 7309.5 3 10739.0 4 14150.0 5 23048.0 6 31291.5 7 37493.5 8 41621.0 9 40882.5 10 36952.0 11 32747.5 12 35069.0 13 46327.5 14 74697.0 15 115773.0 16 148627.5 17 166234.5 18 173263.5 19 172481.5 20 166658.5 21 157829.0 22 153151.5 23 162638.5 24 188145.0 25 231643.5 26 291117.5 27 357198.5 28 425207.0 29 501858.5 30 574914.5 31 643082.0 32 714570.0 33 779278.0 34 841174.0 35 891946.0 36 938976.5 37 978915.5 38 990734.0 39 994784.0 40 1008336.5 41 1014716.0 42 1008633.5 43 1004675.0 44 1002159.0 45 1001132.5 46 996576.5 47 987522.5 48 968597.5 49 936354.0 50 905370.5 51 867133.5 52 812365.0 53 750791.5 54 690467.0 55 633079.0 56 576920.5 57 518223.0 58 458344.5 59 399396.0 60 336389.0 61 274249.0 62 218913.5 63 171117.5 64 131052.0 65 99386.0 66 76053.5 67 59567.5 68 47005.5 69 35550.0 70 26847.0 71 20551.0 72 15511.5 73 11616.5 74 8726.5 75 6682.5 76 5233.5 77 3862.5 78 2745.5 79 1980.5 80 1430.0 81 1052.5 82 789.5 83 565.0 84 392.5 85 278.5 86 217.5 87 175.5 88 125.5 89 86.0 90 57.0 91 37.5 92 27.5 93 18.0 94 13.5 95 14.0 96 14.0 97 14.5 98 8.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11950626366583089 3 0.0 4 3.191727680198461E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.005681275270753262 14-15 7.181387280446539E-4 16-17 0.001923015927319573 18-19 0.0 20-21 2.194485389884344E-5 22-23 1.7160263350979204E-4 24-25 4.131963248841738E-4 26-27 5.9921575839972166E-5 28-29 0.00938575857569964 30-31 0.0028492586971719555 32-33 0.007643038348458064 34-35 0.006578429211739568 36-37 0.00911147728451007 38-39 0.003143567971650762 40-41 4.1031490643281456E-5 42-43 2.6052660863705256E-4 44-45 0.0015133016817415518 46-47 6.712747780344454E-4 48-49 6.822280613363962E-5 50-51 0.0 52-53 2.8184826902235165E-5 54-55 2.185471192943603E-5 56-57 0.0 58-59 0.0010823560244893964 60-61 0.0 62-63 0.0 64-65 0.0 66-67 5.7530488189049E-4 68-69 0.0011491417786822307 70-71 0.001327183714006688 72-73 6.011173122610044E-4 74-75 1.9657242558677117E-4 76-77 0.004121188763127849 78-79 0.00212663462621353 80-81 1.589901071483055E-4 82-83 2.606177903020263E-5 84-85 4.5843182661631335E-4 86-87 0.001116752720466274 88-89 1.15570016360862E-4 90-91 2.8149131282622203E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1208.0 20-21 4036.0 22-23 7754.0 24-25 14454.0 26-27 19035.0 28-29 32110.0 30-31 62681.0 32-33 81772.0 34-35 114123.0 36-37 146708.0 38-39 164660.0 40-41 183796.0 42-43 215828.0 44-45 265048.0 46-47 245129.0 48-49 211893.0 50-51 188772.0 52-53 179945.0 54-55 196891.0 56-57 220798.0 58-59 231576.0 60-61 239750.0 62-63 242593.0 64-65 258047.0 66-67 277077.0 68-69 279368.0 70-71 282239.0 72-73 278475.0 74-75 288187.0 76-77 262560.0 78-79 292679.0 80-81 311853.0 82-83 315389.0 84-85 325621.0 86-87 355785.0 88-89 395526.0 90-91 440649.0 92-93 502568.0 94-95 614861.0 96-97 1158545.0 98-99 1837039.0 100-101 1.3317767E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.4910245864504 #Duplication Level Percentage of deduplicated Percentage of total 1 88.83925922616093 73.28441517067282 2 7.2393834524391965 11.943683167318078 3 2.0152218099772274 4.987131356219475 4 0.8123394690608975 2.6804286045938626 5 0.41012705674528277 1.691590056077183 6 0.21975074803822686 1.0876478615587342 7 0.1423644239148824 0.8220651035378888 8 0.08355956656274399 0.5514331407808363 9 0.05618838437125758 0.4171533656978101 >10 0.1785046482763878 2.2002186332381264 >50 0.00261785494344986 0.1411847274057657 >100 6.024803903345087E-4 0.08720081467364446 >500 3.60693959537333E-5 0.02211091084251319 >1k 4.4809723243176364E-5 0.08373708738327307 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.9948298001240386E-5 0.0 0.0 0.0 3 0.0 2.3937957601488463E-5 0.0 0.0 0.0 4 0.0 3.989659600248077E-5 0.0 0.0 7.979319200496155E-6 5 3.989659600248077E-6 4.7875915202976925E-5 0.0 0.0 7.979319200496155E-6 6 7.979319200496155E-6 4.7875915202976925E-5 0.0 0.0 1.1968978800744231E-5 7 7.979319200496155E-6 5.1865574803225E-5 0.0 0.0 1.1968978800744231E-5 8 1.1968978800744231E-5 6.383455360396924E-5 0.0 0.0 1.1968978800744231E-5 9 1.595863840099231E-5 1.1968978800744231E-4 0.0 0.0 1.9948298001240386E-5 10-11 3.5906936402232696E-5 1.3165876680818655E-4 0.0 5.9844894003721165E-6 1.9948298001240386E-5 12-13 3.5906936402232696E-5 1.4163291580880673E-4 0.0 9.974149000620193E-6 1.9948298001240386E-5 14-15 3.790176620235673E-5 2.074622992129E-4 0.0 1.595863840099231E-5 4.388625560272885E-5 16-17 3.989659600248077E-5 2.61322703816249E-4 0.0 3.790176620235673E-5 5.785006420359712E-5 18-19 4.388625560272885E-5 2.7728134221724135E-4 0.0 6.18397238038452E-5 6.782421320421731E-5 20-21 4.388625560272885E-5 2.992244700186058E-4 0.0 1.1171046880694614E-4 7.181387280446539E-5 22-23 4.388625560272885E-5 3.271520872203423E-4 0.0 3.3114174682059036E-4 9.774666020607789E-5 24-25 5.1865574803225E-5 3.790176620235673E-4 0.0 0.0010173631980632597 1.1171046880694616E-4 26-27 5.1865574803225E-5 3.8699698122406345E-4 0.0 0.0027568547837714215 1.1570012840719424E-4 28-29 5.1865574803225E-5 3.9298147062443556E-4 0.0 0.010434954684448845 1.1968978800744231E-4 30-31 5.585523440347308E-5 4.229039176262962E-4 0.0 0.013824170514859586 1.2168461780756635E-4 32-33 5.9844894003721155E-5 4.3287806662691637E-4 0.0 0.020724286793488637 1.3963808600868269E-4 34-35 6.18397238038452E-5 4.8075398182989326E-4 0.0 0.02802137420234237 1.4761740520917885E-4 36-37 6.582938340409327E-5 5.266350672327462E-4 0.0 0.04148647535317963 1.4761740520917885E-4 38-39 6.981904300434134E-5 5.425937056337385E-4 0.0 0.08083249833082616 1.5360189460955094E-4 40-41 7.580353240471346E-5 6.124127486380798E-4 0.0 0.12035606116068374 1.595863840099231E-4 42-43 8.378285160520961E-5 6.423351956399404E-4 0.0 0.14535127855623795 1.595863840099231E-4 44-45 8.577768140533365E-5 7.221283876449019E-4 0.0 0.17994761177978913 1.6158121381004714E-4 46-47 9.176217080570577E-5 7.879577710489952E-4 0.0 0.21496884375076675 1.6956053301054328E-4 48-49 9.575183040595385E-5 8.039164094499876E-4 0.0 0.24715941223536836 1.8352434161141154E-4 50-51 9.575183040595385E-5 8.81714771654825E-4 0.0 0.2785101573741178 1.8352434161141154E-4 52-53 9.575183040595385E-5 8.976734100558173E-4 0.0 0.3606333105856242 2.1344678861327213E-4 54-55 9.575183040595385E-5 9.076475590564376E-4 0.0 0.46080967348825314 2.4536406541525674E-4 56-57 9.575183040595385E-5 9.116372186566856E-4 0.0 0.5580496469250995 2.493537250155048E-4 58-59 9.575183040595385E-5 9.256010272575539E-4 0.0 0.609617992088106 2.57333044216001E-4 60-61 9.575183040595385E-5 9.455493252587942E-4 0.0 0.6392970698543514 2.7129685281686923E-4 62-63 9.974149000620192E-5 9.774666020607788E-4 0.0 0.6607754023122869 2.8725549121786157E-4 64-65 9.974149000620192E-5 0.001091171900667849 0.0 0.6683697193613591 2.8725549121786157E-4 66-67 1.0173631980632596E-4 0.0011131150284692136 0.0 0.6748190041051603 2.8725549121786157E-4 68-69 1.0373114960645E-4 0.001182934071473555 0.0 0.6815874616169811 2.8725549121786157E-4 70-71 1.0772080920669807E-4 0.0012208358376759117 0.0 0.6866224120324942 2.952348104183577E-4 72-73 1.0772080920669807E-4 0.0012407841356771518 0.0 0.6906419940797441 3.311417468205904E-4 74-75 1.0772080920669807E-4 0.0012687117528788886 0.0 0.6937499389083374 3.311417468205904E-4 76-77 1.0772080920669807E-4 0.0013305514766827338 0.0 0.6967282197999225 3.3313657662071444E-4 78-79 1.0772080920669807E-4 0.001346510115083726 0.0 0.6988886204734569 3.3513140642083846E-4 80-81 1.1171046880694616E-4 0.0013564842640843462 0.0 0.6997045058617076 3.471003852215827E-4 82-83 1.1171046880694616E-4 0.0013664584130849665 0.0 0.7002810116739435 3.6305902362257503E-4 84-85 1.1171046880694616E-4 0.001388401540886331 0.0 0.7005722568247617 3.6305902362257503E-4 86-87 1.1171046880694616E-4 0.0014243084772885635 0.0 0.7007178794001706 3.6505385342269905E-4 88 1.1171046880694616E-4 0.0014761740520917886 0.0 0.7007358328683717 3.6704868322282307E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 31035 0.0 50.740635 1 GTATCAA 55530 0.0 34.116695 1 ATCAACG 69395 0.0 26.588348 3 TCAACGC 69390 0.0 26.578308 4 CAACGCA 70745 0.0 26.122019 5 AACGCAG 72300 0.0 25.692158 6 TATCAAC 72950 0.0 25.525816 2 ACGCAGA 82545 0.0 22.415714 7 CGCAGAG 83635 0.0 22.128578 8 GCAGAGT 97340 0.0 18.736174 9 GTACATG 65960 0.0 18.472208 1 GAGTACT 61695 0.0 18.352015 12-13 TACATGG 64720 0.0 18.332052 2 AGAGTAC 88890 0.0 18.310305 10-11 GTGGTAT 13835 0.0 18.250036 1 ACATGGG 64960 0.0 17.758642 3 CAGAGTA 95405 0.0 17.564383 10-11 TGGTATC 13900 0.0 16.670887 2 AGTACTT 67825 0.0 16.387514 12-13 GTACTTT 71115 0.0 15.876578 14-15 >>END_MODULE