##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139981_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6919806 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.945871603914906 31.0 31.0 34.0 30.0 34.0 2 32.116860357067814 33.0 31.0 34.0 30.0 34.0 3 32.17270700941616 34.0 31.0 34.0 30.0 34.0 4 35.84761119025591 37.0 35.0 37.0 35.0 37.0 5 35.720782634657674 37.0 35.0 37.0 33.0 37.0 6 35.74008534343304 37.0 35.0 37.0 33.0 37.0 7 35.62543082855213 37.0 35.0 37.0 33.0 37.0 8 35.6104111878281 37.0 35.0 37.0 33.0 37.0 9 37.18536661287903 39.0 37.0 39.0 33.0 39.0 10-11 37.096512315518666 39.0 37.0 39.0 33.0 39.0 12-13 37.05956864975694 39.0 37.0 39.0 33.0 39.0 14-15 38.227015251583644 40.0 38.0 41.0 33.0 41.0 16-17 38.22990052033251 40.0 38.0 41.0 33.0 41.0 18-19 38.2694726557363 40.0 38.0 41.0 33.0 41.0 20-21 38.24295112946075 40.0 38.0 41.0 33.0 41.0 22-23 38.15982039144973 40.0 37.5 41.0 33.0 41.0 24-25 38.08060760626815 40.0 37.0 41.0 33.0 41.0 26-27 37.90989339569268 40.0 37.0 41.0 33.0 41.0 28-29 37.804245353644916 40.0 37.0 41.0 32.5 41.0 30-31 37.677509177675766 40.0 37.0 41.0 32.0 41.0 32-33 37.850372816291 40.0 37.0 41.0 33.0 41.0 34-35 37.83790905536276 40.0 37.0 41.0 33.0 41.0 36-37 37.7571067197631 40.0 37.0 41.0 33.0 41.0 38-39 37.56810350395891 40.0 37.0 41.0 32.0 41.0 40-41 37.58576167993196 40.0 37.0 41.0 32.0 41.0 42-43 37.55222536534761 40.0 37.0 41.0 32.0 41.0 44-45 37.529140830522415 40.0 36.5 41.0 32.0 41.0 46-47 37.553835202336245 40.0 37.0 41.0 32.0 41.0 48-49 37.46833234336864 40.0 36.0 41.0 32.0 41.0 50-51 37.38622069818184 39.0 36.0 41.0 31.0 41.0 52-53 37.243464184874185 39.0 36.0 41.0 31.0 41.0 54-55 37.134150175069834 39.0 35.5 41.0 31.0 41.0 56-57 36.98734483444893 39.0 35.0 40.0 31.0 41.0 58-59 36.83684545923759 39.0 35.0 40.0 31.0 41.0 60-61 36.63599319659642 38.0 35.0 40.0 31.0 41.0 62-63 36.39243578126578 38.0 35.0 40.0 30.0 41.0 64-65 36.191968645353384 38.0 34.5 40.0 30.0 41.0 66-67 35.90627702398226 37.0 34.0 40.0 30.0 41.0 68-69 35.62375962370261 37.0 34.0 39.5 29.0 41.0 70-71 35.338487321244635 36.0 34.0 39.0 29.0 40.5 72-73 35.04049988567818 36.0 34.0 39.0 29.0 40.0 74-75 34.70983306669174 35.0 33.5 38.0 29.0 40.0 76-77 33.66967449843021 35.0 32.0 37.0 27.5 39.0 78-79 34.00861180230615 35.0 33.0 37.0 29.0 39.0 80-81 33.90503080291809 35.0 33.0 36.5 29.0 39.0 82-83 33.69574738733394 35.0 33.0 36.0 29.0 37.5 84-85 33.484494964755775 35.0 33.0 36.0 29.0 37.0 86-87 33.29238072521859 35.0 33.0 35.0 29.0 37.0 88-89 33.086716900125325 35.0 33.0 35.0 29.0 36.0 90-91 32.98712289728908 34.5 32.5 35.0 29.0 36.0 92-93 32.9312804050635 34.0 32.0 35.0 29.0 36.0 94-95 32.8831254094807 34.0 32.0 35.0 29.0 35.5 96-97 32.80418083680841 34.0 32.0 35.0 29.0 35.0 98-99 32.94326838907282 34.0 32.0 35.0 29.0 35.0 100-101 32.49141732613303 34.0 31.5 35.0 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 10.0 20 67.0 21 287.0 22 1486.0 23 5305.0 24 13395.0 25 27743.0 26 49528.0 27 76995.0 28 107637.0 29 139247.0 30 174622.0 31 215321.0 32 263072.0 33 331628.0 34 432968.0 35 592098.0 36 888332.0 37 1411364.0 38 1535012.0 39 632948.0 40 20740.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.85208718279096 22.223310884727116 15.616319301437063 24.308282631044857 2 14.11166261206046 22.822138872454335 40.40236125775358 22.66383725773162 3 16.954254333540998 27.281210173179787 31.763115221632752 24.001420271646463 4 12.219143137827853 19.425501235150232 38.96947399970462 29.385881627317296 5 12.63268074278383 38.36152342999211 36.184627141281126 12.82116868594293 6 29.316732289893675 39.310668536083234 18.598180353611067 12.774418820412018 7 25.548331846297422 33.05734293707078 23.934760598779793 17.459564617852003 8 24.09466392554936 37.233298158936826 21.323690288427162 17.348347627086653 9 25.429600193993878 16.181537459287153 21.202949909289366 37.1859124374296 10-11 23.773245955161173 26.971529259635314 29.628605195001136 19.626619590202385 12-13 24.583774458416897 24.68426137958203 29.465826065065986 21.266138096935087 14-15 21.81436878432719 26.071959242788022 26.879611942878167 25.23406003000662 16-17 21.461223045848396 29.022128655051887 27.605961785633877 21.91068651346584 18-19 21.501029075092568 28.27239665389463 29.183730006303644 21.042844264709153 20-21 22.323997791976208 27.461201150201475 28.999331508440257 21.21546954938206 22-23 22.038605876656113 27.363295213770595 28.866341986844805 21.731756922728483 24-25 21.840253449793945 27.545945870927184 28.88281127513006 21.730989404148808 26-27 21.80429231056725 27.644517123016225 28.832783808505013 21.71840675791151 28-29 21.761960343604457 27.677083057517677 28.893565757853167 21.6673908410247 30-31 22.052009617896548 27.582741931967703 28.712755692202684 21.652492757933068 32-33 21.880600739293047 27.723757938247857 28.65722628146222 21.738415040996877 34-35 21.954983047491773 27.693243308162973 28.684240791126758 21.667532853218503 36-37 21.91796901482677 27.650629033228864 28.685701180017354 21.745700771927012 38-39 21.84131717917509 27.794925917608555 28.640167427109414 21.72358947610694 40-41 22.017579704145575 27.655836687623925 28.579340214235533 21.74724339399497 42-43 21.916708798129594 27.78782965247 28.34254961412745 21.95291193527296 44-45 22.02645699804551 27.86814960776892 28.15864524402497 21.946748150160595 46-47 22.108924415145232 27.79329734997205 27.93061086386234 22.167167371020373 48-49 22.00091931593952 27.91904630005192 27.963549827337335 22.116484556671217 50-51 22.004877044706088 28.054487818428907 27.79324072857341 22.147394408291593 52-53 22.190659348568953 27.908082057419342 27.68994754982883 22.211311044182878 54-55 22.154499085071134 27.806043235328985 27.76919672570263 22.270260953897246 56-57 22.135716192739313 27.900677707889677 27.72907595870486 22.23453014066614 58-59 22.092402794997852 27.945534561689893 27.762852825395612 22.199209817916646 60-61 22.110428345291762 27.809741808615367 27.849857309164545 22.229972536928326 62-63 22.28345684340226 27.857532631937726 27.819301492788284 22.03970903187173 64-65 22.003597567079023 27.833484785739003 27.787329419777002 22.375588227404968 66-67 22.09882835093723 27.926571138362384 27.611331535686922 22.363268975013465 68-69 22.04190653131875 28.101834677845623 27.660227721240748 22.19603106959488 70-71 22.060054698780085 27.860981133900246 27.747326161955964 22.331638005363697 72-73 22.058083756030435 27.881665336785037 27.51980924964743 22.540441657537094 74-75 21.977189555558173 27.951187123237798 27.463338688498943 22.60828463270509 76-77 22.130521871698367 27.667745725567567 27.607913480050783 22.593818922683287 78-79 22.070649542590193 27.747884523436074 27.557811141505468 22.623654792468265 80-81 22.354899299222303 27.703827725430642 27.307010141323335 22.63426283402372 82-83 22.32959631977597 27.850479232295 27.469164215012963 22.350760232916063 84-85 22.190193208863658 27.633985986074773 27.39518197407128 22.780638830990288 86-87 22.08100240352537 27.85310868942644 27.46681845511645 22.59907045193174 88-89 22.35986844297212 27.60577632449464 27.45744625152904 22.57690898100419 90-91 22.3944677002879 27.80760688307599 27.524069652836953 22.27385576379916 92-93 22.218476813058942 27.70247534091601 27.54113691303771 22.537910932987337 94-95 22.292446488462016 27.49594357712172 27.61569241939032 22.59591751502594 96-97 22.221417839882978 27.76860598314501 27.679243809916443 22.330732367055564 98-99 22.409074185996623 28.24632900544636 27.829298009542676 21.51529879901434 100-101 22.845472928308862 30.990348003619804 25.065383311339694 21.09879575673164 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1606.0 1 1420.0 2 1826.5 3 2539.0 4 3274.5 5 4939.5 6 6439.5 7 7912.5 8 8990.0 9 9100.0 10 8557.5 11 7942.5 12 8829.5 13 11732.0 14 18835.5 15 28693.0 16 35994.0 17 39054.0 18 39400.5 19 38097.0 20 35519.5 21 32989.0 22 32256.0 23 34912.5 24 41261.0 25 51320.0 26 64370.0 27 78563.5 28 93985.0 29 111068.5 30 127227.0 31 143361.0 32 161217.5 33 178984.5 34 194692.5 35 208180.0 36 223350.0 37 236142.0 38 244528.5 39 250958.5 40 258280.0 41 265716.0 42 268328.0 43 271395.5 44 275455.5 45 278163.0 46 279479.5 47 279058.0 48 277331.5 49 273530.0 50 268901.5 51 260958.5 52 248455.5 53 235982.0 54 222812.5 55 206121.5 56 188974.0 57 171703.5 58 153540.0 59 133831.0 60 112545.0 61 92592.0 62 74029.0 63 57409.0 64 43321.5 65 32611.0 66 24979.5 67 19538.0 68 15194.5 69 11270.5 70 8418.0 71 6386.0 72 4803.5 73 3554.0 74 2621.0 75 1921.5 76 1403.0 77 988.5 78 685.0 79 454.0 80 293.0 81 208.0 82 159.0 83 117.5 84 86.0 85 62.0 86 45.5 87 32.0 88 21.0 89 14.0 90 9.0 91 6.0 92 4.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0015029323076398383 3 4.33538165665338E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.002485735383496581 22-23 3.468840955448881E-4 24-25 0.001098700215959647 26-27 0.012025134628360069 28-29 2.3873822939141068E-4 30-31 0.002737631680627019 32-33 0.0030265258661996866 34-35 0.0016449994999492672 36-37 0.05853180338839791 38-39 0.02734830295654348 40-41 0.02541989057610083 42-43 0.0030838758360078257 44-45 0.0016223927453807062 46-47 0.0034054169337656265 48-49 0.0028096225053978055 50-51 6.48538972945888E-4 52-53 9.41534152867485E-4 54-55 0.0012938062202909747 56-57 0.011544754585402559 58-59 0.008568082027658151 60-61 0.004340308768442601 62-63 0.0024379856633483603 64-65 0.001128520308704277 66-67 4.1319968031567136E-4 68-69 0.0012200785145594225 70-71 3.3815808839908944E-5 72-73 5.131349724574804E-4 74-75 1.2113134600632548E-4 76-77 0.0043085767650014655 78-79 0.001055410094225949 80-81 6.742437277802979E-4 82-83 5.468681499067681E-4 84-85 0.003058061312928273 86-87 0.0034110004389320344 88-89 0.041696275272300846 90-91 3.1930855956909215E-4 92-93 5.420957559914641E-4 94-95 2.2129094498576343E-4 96-97 0.016779055360866886 98-99 1.0817632351297851E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 207.0 20-21 616.0 22-23 1157.0 24-25 2366.0 26-27 3176.0 28-29 5337.0 30-31 13815.0 32-33 18079.0 34-35 25713.0 36-37 39477.0 38-39 40812.0 40-41 44399.0 42-43 52659.0 44-45 63159.0 46-47 63224.0 48-49 56284.0 50-51 51735.0 52-53 48217.0 54-55 52452.0 56-57 55176.0 58-59 34320.0 60-61 59805.0 62-63 58311.0 64-65 62324.0 66-67 66870.0 68-69 68407.0 70-71 68655.0 72-73 67115.0 74-75 69026.0 76-77 70757.0 78-79 75334.0 80-81 76408.0 82-83 74078.0 84-85 75088.0 86-87 79586.0 88-89 85522.0 90-91 93503.0 92-93 98145.0 94-95 122028.0 96-97 157792.0 98-99 598380.0 100-101 4120292.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.0504454102385 #Duplication Level Percentage of deduplicated Percentage of total 1 92.17673453272849 82.08379266600784 2 5.785790686429109 10.304544753538433 3 1.2068970358542852 3.2242415582136204 4 0.40508062936273415 1.4429044188724487 5 0.1779836048399933 0.792475964336064 6 0.08088227891960037 0.4321561778151334 7 0.04781415361674701 0.2980510173539422 8 0.027422191105214655 0.1953566665635236 9 0.02246650325984514 0.18005869098898067 >10 0.06766320144384927 0.9320420724252548 >50 9.536814872519733E-4 0.05634235472659736 >100 2.8884419720127556E-4 0.04437454651145058 >500 2.265675570522927E-5 0.013659112646678025 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.44512721888446E-5 0.0 0.0 0.0 3 0.0 1.44512721888446E-5 0.0 0.0 0.0 4 0.0 5.78050887553784E-5 0.0 0.0 0.0 5 0.0 7.2256360944223E-5 0.0 0.0 0.0 6 7.2256360944223E-5 7.2256360944223E-5 0.0 0.0 1.44512721888446E-5 7 7.2256360944223E-5 7.2256360944223E-5 0.0 1.44512721888446E-5 1.44512721888446E-5 8 7.2256360944223E-5 7.2256360944223E-5 0.0 1.44512721888446E-5 1.44512721888446E-5 9 7.2256360944223E-5 1.300614496996014E-4 0.0 1.44512721888446E-5 1.44512721888446E-5 10-11 9.39332692274899E-5 1.300614496996014E-4 0.0 2.16769082832669E-5 1.44512721888446E-5 12-13 1.011589053219122E-4 1.372870857940237E-4 0.0 4.33538165665338E-5 1.44512721888446E-5 14-15 1.011589053219122E-4 1.8786653845497982E-4 0.0 4.33538165665338E-5 3.61281804721115E-5 16-17 1.44512721888446E-4 2.16769082832669E-4 0.0 5.7805088755378406E-5 5.78050887553784E-5 18-19 1.44512721888446E-4 2.3122035502151362E-4 0.0 7.2256360944223E-5 7.2256360944223E-5 20-21 1.44512721888446E-4 2.601228993992028E-4 0.0 1.156101775107568E-4 7.948199703864531E-5 22-23 1.5896399407729062E-4 3.0347671596573663E-4 0.0 3.251536242490035E-4 8.67076331330676E-5 24-25 1.734152662661352E-4 3.251536242490035E-4 0.0 7.297892455366524E-4 9.39332692274899E-5 26-27 1.734152662661352E-4 3.323792603434258E-4 0.0 0.0021749164644211125 1.083845414163345E-4 28-29 1.734152662661352E-4 3.323792603434258E-4 0.0 0.013172334600131855 1.156101775107568E-4 30-31 1.734152662661352E-4 3.323792603434258E-4 0.0 0.02018842724781591 1.156101775107568E-4 32-33 1.734152662661352E-4 3.323792603434258E-4 0.0 0.024776706167774068 1.300614496996014E-4 34-35 1.8786653845497982E-4 3.829587130043819E-4 0.0 0.031120814658676846 1.300614496996014E-4 36-37 1.8786653845497982E-4 4.190868934764934E-4 0.0 0.03966874215837843 1.300614496996014E-4 38-39 1.8786653845497982E-4 4.479894378541826E-4 0.0 0.05518218285310311 1.372870857940237E-4 40-41 1.8786653845497982E-4 5.05794526609561E-4 0.0 0.08737961728984887 1.44512721888446E-4 42-43 2.16769082832669E-4 5.419227070816725E-4 0.0 0.10230778146092535 1.5173835798286831E-4 44-45 2.239947189270913E-4 6.214047041203179E-4 0.0 0.1253575606021325 1.5896399407729062E-4 46-47 2.312203550215136E-4 6.792097928756963E-4 0.0 0.15052445111900536 1.734152662661352E-4 48-49 2.312203550215136E-4 6.864354289701185E-4 0.0 0.17293837428390332 1.8786653845497982E-4 50-51 2.601228993992028E-4 7.370148816310746E-4 0.0 0.19348085770034595 1.8786653845497982E-4 52-53 2.601228993992028E-4 7.370148816310746E-4 0.0 0.2213429104804383 1.9509217454940212E-4 54-55 2.601228993992028E-4 7.370148816310746E-4 0.0 0.2789673583334562 2.2399471892709132E-4 56-57 2.601228993992028E-4 7.44240517725497E-4 0.0 0.34308765303535965 2.4567162721035824E-4 58-59 2.745741715880474E-4 7.514661538199193E-4 0.0 0.396904190666617 2.601228993992028E-4 60-61 2.745741715880474E-4 7.514661538199193E-4 0.0 0.7656284005649869 2.601228993992028E-4 62-63 2.745741715880474E-4 7.586917899143415E-4 0.0 0.7751373376652467 2.601228993992028E-4 64-65 2.745741715880474E-4 8.526250591418314E-4 0.0 0.7852749051057212 2.601228993992028E-4 66-67 2.89025443776892E-4 8.743019674250983E-4 0.0 0.793006335726753 2.6734853549362507E-4 68-69 3.0347671596573663E-4 9.176557839916321E-4 0.0 0.8007883458004459 2.8179980768246974E-4 70-71 3.0347671596573663E-4 9.248814200860544E-4 0.0 0.8086642891433662 2.89025443776892E-4 72-73 3.323792603434258E-4 9.39332692274899E-4 0.0 0.8147771772792474 3.323792603434258E-4 74-75 3.396048964378481E-4 9.754608727470106E-4 0.0 0.8203120145275749 3.396048964378481E-4 76-77 3.468305325322704E-4 0.0010260403254079668 0.0 0.82518931889131 3.468305325322704E-4 78-79 3.468305325322704E-4 0.0010693941419745005 0.0 0.830066623255045 3.468305325322704E-4 80-81 3.468305325322704E-4 0.0010693941419745005 0.0 0.8331375185951745 3.685074408155373E-4 82-83 3.468305325322704E-4 0.001083845414163345 0.0 0.8351173428850462 3.7573307690995963E-4 84-85 3.61281804721115E-4 0.001083845414163345 0.0 0.8368442699116132 3.829587130043819E-4 86-87 3.61281804721115E-4 0.001083845414163345 0.0 0.8371405209914844 3.901843490988042E-4 88-89 3.829587130043819E-4 0.0011705530472964126 0.0 0.8371766491719566 4.046356212876488E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7830 0.0 52.226524 1 GTATCAA 14065 0.0 35.602737 1 TCAACGC 17490 0.0 28.071577 4 ATCAACG 17630 0.0 27.872772 3 CAACGCA 17950 0.0 27.30483 5 AACGCAG 18450 0.0 26.657022 6 TATCAAC 18630 0.0 26.582197 2 GACCGAG 5645 0.0 26.35486 90-91 GAGACCG 5715 0.0 26.135456 88-89 CGAGACC 5635 0.0 25.507248 88-89 AGACCGA 5780 0.0 25.160305 90-91 ACCGAGG 5985 0.0 24.990583 92-93 ACGAGAC 5910 0.0 24.734417 86-87 GCCCACG 6035 0.0 23.383368 82-83 CACGAGA 6075 0.0 23.20153 86-87 ACGCAGA 21745 0.0 22.59816 7 CCACGAG 6390 0.0 22.591248 84-85 CCCACGA 6200 0.0 22.54732 84-85 CGCAGAG 22030 0.0 22.3444 8 ATCTCCG 6270 0.0 22.25144 74-75 >>END_MODULE