##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139980_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23555166 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.437301694244056 31.0 31.0 34.0 30.0 34.0 2 31.605498513574474 31.0 31.0 34.0 30.0 34.0 3 31.65666576070829 31.0 31.0 34.0 30.0 34.0 4 35.445926129325514 37.0 35.0 37.0 33.0 37.0 5 35.260101329788974 37.0 35.0 37.0 33.0 37.0 6 35.253656756229184 37.0 35.0 37.0 32.0 37.0 7 35.162059651797826 37.0 35.0 37.0 32.0 37.0 8 35.09635979640305 37.0 35.0 37.0 32.0 37.0 9 36.64723398680358 39.0 35.0 39.0 32.0 39.0 10-11 36.57918515624131 39.0 35.0 39.0 32.0 39.0 12-13 36.533818016820604 39.0 35.0 39.0 32.0 39.0 14-15 37.621631237920376 39.0 36.0 41.0 32.0 41.0 16-17 37.586161396612525 39.0 36.0 41.0 32.0 41.0 18-19 37.59572874587256 39.0 36.0 41.0 32.0 41.0 20-21 37.567014526480676 39.0 36.0 41.0 32.0 41.0 22-23 37.489813438837544 39.0 36.0 41.0 32.0 41.0 24-25 37.369047259142974 39.0 36.0 41.0 31.5 41.0 26-27 37.134560060076666 39.0 36.0 40.5 31.0 41.0 28-29 36.9725139982708 39.0 36.0 40.0 31.0 41.0 30-31 36.800383077823284 39.0 35.5 40.0 30.0 41.0 32-33 36.57634103776942 38.0 35.0 40.0 30.0 41.0 34-35 36.41696157682954 38.0 35.0 40.0 30.0 41.0 36-37 36.25725697258714 38.0 35.0 40.0 30.0 41.0 38-39 36.086862350243564 38.0 34.5 40.0 29.5 41.0 40-41 35.92517153091539 38.0 34.0 40.0 29.0 41.0 42-43 35.707333473723324 38.0 34.0 40.0 28.5 41.0 44-45 36.14625034686529 38.0 34.5 40.0 29.5 41.0 46-47 36.410322944123614 38.0 35.0 40.0 30.0 41.0 48-49 36.46270299144092 38.0 35.0 40.0 30.0 41.0 50-51 36.38889074268394 38.0 35.0 40.0 30.0 41.0 52-53 36.255304856343955 38.0 34.5 40.0 29.0 41.0 54-55 36.13280193952154 38.0 34.0 40.0 29.0 41.0 56-57 36.014084406150246 38.0 34.0 40.0 28.5 41.0 58-59 35.84598575066185 38.0 34.0 40.0 28.0 41.0 60-61 35.66677507946878 38.0 34.0 40.0 28.0 41.0 62-63 35.45714287540125 37.0 34.0 40.0 28.0 41.0 64-65 35.21498591181289 37.0 33.0 40.0 28.0 41.0 66-67 34.91812771563137 36.5 33.0 39.0 27.5 41.0 68-69 34.64793634895463 36.0 32.5 39.0 27.0 40.5 70-71 34.365105300921 36.0 32.0 39.0 26.5 40.0 72-73 34.05743059790852 35.0 32.0 38.5 26.0 40.0 74-75 33.71312533991467 35.0 32.0 37.5 26.0 40.0 76-77 32.00236922732844 33.5 29.5 36.0 25.0 38.5 78-79 32.99467837480465 34.0 31.0 36.0 26.0 39.0 80-81 33.036582620252936 34.0 31.0 36.0 26.0 39.0 82-83 32.79545393985272 34.0 31.0 36.0 26.0 37.5 84-85 32.561350422716274 34.0 31.0 35.0 26.0 37.0 86-87 32.343603306935954 34.0 31.0 35.0 26.0 37.0 88-89 32.13346067230969 34.0 31.0 35.0 26.0 36.0 90-91 31.99435215325782 34.0 31.0 35.0 26.0 36.0 92-93 31.966633718688897 34.0 31.0 35.0 26.0 35.5 94-95 31.932486437345464 34.0 31.0 35.0 26.0 35.0 96-97 32.032679270050444 34.0 31.0 35.0 26.0 35.0 98-99 32.24640389507834 34.0 31.0 35.0 27.0 35.0 100 30.373173426119077 32.0 29.0 34.0 24.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 43.0 20 290.0 21 2207.0 22 10177.0 23 33849.0 24 84577.0 25 170222.0 26 292380.0 27 438232.0 28 598559.0 29 762439.0 30 923748.0 31 1096615.0 32 1294494.0 33 1549603.0 34 1892258.0 35 2353190.0 36 3068658.0 37 3946006.0 38 3661271.0 39 1336178.0 40 40165.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.508242056116266 21.87597404323111 14.95643885506899 23.65934504558363 2 14.440666964301197 22.565337353326303 41.17089719129796 21.823098491074536 3 17.540712725183088 27.415667544011363 31.640706756216446 23.4029129745891 4 12.303469545994401 19.35330175238275 39.807501788994735 28.535726912628114 5 12.366548382635045 38.68106469723032 36.57404070088065 12.378346219253984 6 28.522851420363583 39.867114500487915 19.137216014525222 12.472818064623276 7 24.962112345122083 33.42850990733837 24.462680500744508 17.146697246795036 8 23.518484964473153 37.644278464186 21.851231306418676 16.986005264922177 9 25.082022347029948 16.54199762379089 21.792234450820683 36.58374557835848 10-11 23.271048405161782 27.296980978289536 30.144469173393766 19.287501443154916 12-13 24.119311189038896 24.996022099972905 29.982464126091873 20.902202584896326 14-15 21.378840280134842 26.45713653760961 27.41462618368815 24.7493969985674 16-17 21.00144279254333 29.46418416630174 28.10516146986109 21.42921157129384 18-19 20.977298330134563 28.71434780865332 29.698524885936354 20.60982897527576 20-21 21.79462015929032 27.95482363054781 29.46515982251034 20.785396387651534 22-23 21.487603095224042 27.895598397100958 29.33370007341879 21.283098434256214 24-25 21.332710334683576 28.00086249588059 29.379437102496404 21.286990066939435 26-27 21.35636119765691 28.155575039280293 29.223291418769797 21.264772344292997 28-29 21.291471682166545 28.224501611685675 29.267507158688037 21.21651954745974 30-31 21.565445736706067 28.0257085302548 29.205392156789678 21.203453576249455 32-33 21.395819405436846 28.203455331654816 29.08487862488684 21.315846638021497 34-35 21.490565665203295 28.241435385480727 29.069525756127806 21.198473193188168 36-37 21.48022563367129 28.153394818214128 29.0773583923288 21.28902115578578 38-39 21.337602439548522 28.223175948604634 29.078649891054702 21.36057172079214 40-41 21.634839449744003 28.104250056250883 29.003093651914526 21.257816842090588 42-43 21.4624759907171 28.199122911370857 28.786072246938293 21.552328850973755 44-45 21.537520803926473 28.31791067741364 28.592496707997345 21.552071810662536 46-47 21.601551811412893 28.266484797075307 28.451343263386313 21.68062012812548 48-49 21.523485189836563 28.427140416654435 28.421448636939957 21.627925756569045 50-51 21.47255231793994 28.528970081303356 28.244129861515056 21.75434773924165 52-53 21.56904941515185 28.36354908600444 28.130012080580517 21.937389418263194 54-55 21.672534320891643 28.124597821824043 28.405897603903618 21.796970253380696 56-57 21.527353399692586 27.900668803647218 28.500171382872804 22.071806413787392 58-59 21.39062921477089 27.75984897918385 28.551244448088493 22.29827735795677 60-61 21.527163220584725 27.95926970653955 28.772008059119873 21.74155901375585 62-63 21.13959753877302 28.15084023251586 28.74732124166276 21.962240987048354 64-65 20.9843668921435 28.42735639099554 28.47552360307387 22.112753113787086 66-67 21.12074225112462 28.93086661008405 28.01845645439946 21.92993468439187 68-69 21.200246460319846 28.958346767611136 27.82146592225715 22.019940849811864 70-71 21.149211897289444 28.454231674278883 27.819049830318583 22.577506598113093 72-73 21.325812137970697 28.038135267547563 27.89343019232127 22.74262240216047 74-75 21.457192239623353 28.03956671980432 27.99390278454107 22.509338256031256 76-77 21.69708160742135 27.97351460618287 27.508113927535643 22.82128985886013 78-79 21.915682381772797 28.02002127886185 27.142073459945195 22.922222879420158 80-81 21.76473550056669 28.27445220972234 27.288184193753835 22.672628095957133 82-83 21.711143723534644 28.05675117678274 27.406754498168674 22.825350601513943 84-85 21.800131078481762 28.410058551015773 27.34699689021704 22.44281348028543 86-87 22.128262033297165 28.272426631430392 27.459480855680045 22.139830479592394 88-89 21.978001277031865 28.3724323044885 27.723497177968515 21.926069240511122 90-91 21.889813927551675 28.0189369562427 27.764395091425286 22.32685402478034 92-93 21.818968357595566 27.58502701081515 28.00081503215845 22.59518959943084 94-95 21.154209026909633 27.967806455108814 28.6096957063605 22.268288811621055 96-97 21.242657612994346 27.878001216006503 28.817761812462873 22.061579358536278 98-99 22.291578530091563 29.81809382129948 29.31527539066033 18.575052257948627 100 21.94060261131365 30.455778120090542 22.88089107871081 24.722728189884993 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3931.0 1 3671.0 2 5634.0 3 8298.5 4 11306.0 5 18908.0 6 25661.5 7 30157.0 8 32685.0 9 31782.5 10 28913.5 11 25988.5 12 27829.0 13 36511.0 14 56831.5 15 88681.5 16 115699.0 17 130288.5 18 136769.5 19 135933.5 20 130526.0 21 125047.0 22 121439.5 23 127267.5 24 148630.0 25 182344.0 26 228065.0 27 280489.5 28 336028.5 29 399139.0 30 459453.0 31 518847.0 32 581651.5 33 637897.0 34 695881.5 35 749355.5 36 800529.5 37 846758.5 38 874842.5 39 896942.5 40 924254.0 41 948011.0 42 960999.0 43 972041.5 44 980689.0 45 987417.5 46 985452.0 47 974990.0 48 960614.5 49 933382.5 50 899292.5 51 856271.0 52 801738.5 53 743206.0 54 683301.5 55 620121.5 56 555647.0 57 491811.0 58 430374.0 59 371824.0 60 310372.0 61 250651.5 62 197625.0 63 153117.0 64 116082.0 65 87420.5 66 66558.5 67 52025.5 68 41290.0 69 31426.5 70 23355.0 71 17626.5 72 13387.0 73 10079.0 74 7632.5 75 5812.5 76 4416.0 77 3245.0 78 2335.5 79 1740.5 80 1288.0 81 911.0 82 691.0 83 509.0 84 366.0 85 269.5 86 198.0 87 144.5 88 109.5 89 82.0 90 57.0 91 41.5 92 32.5 93 20.0 94 9.5 95 4.5 96 2.5 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11645003902753222 3 0.0 4 1.6132342264113105E-4 5 0.0 6 0.0 7 0.0 8 9.339777100276008E-5 9 0.0 10-11 1.0613383068495462E-5 12-13 1.0188847745755645E-4 14-15 3.43873611419253E-4 16-17 6.41048337337126E-4 18-19 1.910408952329183E-5 20-21 7.217576037375835E-5 22-23 0.0 24-25 0.0064882632839120226 26-27 3.1874721295405674E-5 28-29 0.0022243145049717894 30-31 0.0020740567295400424 32-33 0.02364892445950842 34-35 0.016036934022554652 36-37 0.008423143641930766 38-39 0.004419965411502345 40-41 8.795061006452057E-4 42-43 2.951649876078806E-4 44-45 0.0010539942279924463 46-47 0.001844923025538453 48-49 0.0013264184513559598 50-51 5.202847604454008E-5 52-53 0.0 54-55 0.0 56-57 0.0 58-59 6.628768397689531E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 1.2507241873437633E-4 70-71 5.771070824870111E-4 72-73 9.863171914716605E-6 74-75 5.2444196752445555E-5 76-77 3.11219209603405E-4 78-79 1.4607541114910582E-4 80-81 2.599429544788678E-5 82-83 2.639162372089697E-6 84-85 0.0 86-87 1.4722959703150233E-4 88-89 5.084540346716751E-4 90-91 5.678315532240014E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 955.0 20-21 3148.0 22-23 5929.0 24-25 11874.0 26-27 14808.0 28-29 25773.0 30-31 51373.0 32-33 67531.0 34-35 94923.0 36-37 121460.0 38-39 95559.0 40-41 151882.0 42-43 179094.0 44-45 214337.0 46-47 193465.0 48-49 178084.0 50-51 107383.0 52-53 47342.0 54-55 49546.0 56-57 52694.0 58-59 131070.0 60-61 214850.0 62-63 213853.0 64-65 229489.0 66-67 248483.0 68-69 252611.0 70-71 256639.0 72-73 254518.0 74-75 266156.0 76-77 243683.0 78-79 270189.0 80-81 288490.0 82-83 292112.0 84-85 306020.0 86-87 333327.0 88-89 373088.0 90-91 414798.0 92-93 478574.0 94-95 591174.0 96-97 1175199.0 98-99 1989607.0 100-101 1.3064076E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.74355369556162 #Duplication Level Percentage of deduplicated Percentage of total 1 88.07280675037912 71.99384207718438 2 7.82624597708212 12.794903165245708 3 2.1274529166302387 5.217166851760292 4 0.864110230390926 2.825417640673791 5 0.41490543699903915 1.6957922433955712 6 0.2352201286703285 1.1536637530943945 7 0.1369081527680354 0.7833951256007838 8 0.08946237882361299 0.5850378213680547 9 0.054575746461265284 0.40150939151986165 >10 0.17475454378992142 2.1911533772651075 >50 0.0026344250588502737 0.14134685114751705 >100 8.154495491124652E-4 0.1055097495750191 >500 4.923275511762657E-5 0.02530757240146241 >1k 5.863064237494175E-5 0.08595437976801544 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2736059682194555E-5 0.0 4.245353227398185E-6 0.0 3 0.0 1.2736059682194555E-5 0.0 1.698141290959274E-5 0.0 4 0.0 3.820817904658367E-5 0.0 2.9717472591787295E-5 0.0 5 0.0 4.245353227398185E-5 0.0 3.396282581918548E-5 0.0 6 0.0 4.245353227398185E-5 0.0 3.820817904658367E-5 8.49070645479637E-6 7 0.0 4.245353227398185E-5 0.0 3.820817904658367E-5 8.49070645479637E-6 8 0.0 6.368029841097277E-5 0.0 3.820817904658367E-5 1.2736059682194555E-5 9 0.0 1.1037918391235282E-4 0.0 7.641635809316734E-5 2.1226766136990925E-5 10-11 0.0 1.2311524359454737E-4 0.0 9.552044761645916E-5 2.1226766136990925E-5 12-13 0.0 1.2736059682194554E-4 0.0 1.0825650729865373E-4 2.3349442750690016E-5 14-15 0.0 1.8679554200552015E-4 0.0 1.3372862666304283E-4 2.9717472591787295E-5 16-17 0.0 1.995316016877147E-4 0.0 1.6556877586852922E-4 2.9717472591787295E-5 18-19 0.0 2.2288104443840472E-4 0.0 1.974089250740156E-4 2.9717472591787295E-5 20-21 0.0 2.4623048718909474E-4 0.0 2.589665468712893E-4 2.9717472591787295E-5 22-23 0.0 2.801933130082802E-4 0.0 4.967063276055877E-4 3.820817904658367E-5 24-25 0.0 3.3113755173705845E-4 0.0 0.0012014349633536862 4.245353227398185E-5 26-27 0.0 3.523643178740494E-4 0.0 0.0028783494881759694 4.245353227398185E-5 28-29 0.0 3.651003775562439E-4 0.0 0.010415974143421448 4.4576208887680944E-5 30-31 0.0 4.2028996951242034E-4 0.0 0.014207074575488025 4.669888550138004E-5 32-33 0.0 4.3302602919461486E-4 0.0 0.022960992930383086 5.943494518357459E-5 34-35 0.0 5.009516808329858E-4 0.0 0.03373994477474708 6.792565163837096E-5 36-37 0.0 5.540185961754633E-4 0.0 0.05405820532107479 6.792565163837096E-5 38-39 0.0 5.794907155398523E-4 0.0 0.1841528096214648 7.004832825207005E-5 40-41 0.0 6.346803074960287E-4 0.0 0.32087228763320963 7.641635809316734E-5 42-43 0.0 6.559070736330197E-4 0.0 0.3646864556165726 7.641635809316734E-5 44-45 0.0 7.195873720439924E-4 0.0 0.4285981257784386 7.641635809316734E-5 46-47 0.0 7.662862575453724E-4 0.0 0.49451572534025023 8.278438793426461E-5 48-49 0.0 7.960037301371597E-4 0.0 0.5554789976856882 8.915241777536189E-5 50-51 0.0 8.787881180714243E-4 0.0 0.6162045302503918 8.915241777536189E-5 52-53 0.0 8.978922075947161E-4 0.0 1.0466769794787267 9.764312423015827E-5 54-55 0.0 9.106282672769107E-4 0.0 1.6279847061999053 1.0825650729865373E-4 56-57 0.0 9.38223063254999E-4 0.0 2.2735543447242104 1.1037918391235282E-4 58-59 0.0 9.679405358467862E-4 0.0 2.9477164372350426 1.1037918391235282E-4 60-61 0.0 0.0010019033616659716 0.0 3.134210559161417 1.14624537139751E-4 62-63 0.0 0.0010252528044166617 0.0 3.1430939607897477 1.14624537139751E-4 64-65 0.0 0.001101669162509829 0.0 3.1506995110966316 1.14624537139751E-4 66-67 0.0 0.001125018605260519 2.1226766136990925E-6 3.1562248383220903 1.2311524359454737E-4 68-69 0.0 0.0011632267843071026 4.245353227398185E-6 3.1616503997467054 1.3160595004934374E-4 70-71 0.0 0.0011695948141482 4.245353227398185E-6 3.1665240652517586 1.3585130327674192E-4 72-73 0.0 0.0011780855206029964 4.245353227398185E-6 3.1706420578823344 1.698141290959274E-4 74-75 0.0 0.0012226617294906774 4.245353227398185E-6 3.174053199200549 1.719368057096265E-4 76-77 0.0 0.001284219351287951 4.245353227398185E-6 3.177468585871991 1.740594823233256E-4 78-79 0.0 0.0013033234408112429 4.245353227398185E-6 3.1796464520776464 1.740594823233256E-4 80-81 0.0 0.00130969147065234 4.245353227398185E-6 3.1804297197481013 1.9316357184661742E-4 82-83 0.0 0.0013203048537208356 4.245353227398185E-6 3.1810007197571863 2.1651301459730743E-4 84-85 0.0 0.0013521450029263219 4.245353227398185E-6 3.1813085078661727 2.1863569121100652E-4 86-87 0.0 0.001375494445677012 4.245353227398185E-6 3.1814889353783373 2.2075836782470563E-4 88 0.0 0.001422193331178392 4.245353227398185E-6 3.1815016714380193 2.250037210521038E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 26745 0.0 46.761005 1 ATCTCGT 17680 0.0 43.56585 94 TATCTCG 21880 0.0 34.538906 94 GTATCAA 45775 0.0 33.752857 1 TCAACGC 55155 0.0 27.249857 4 ATCAACG 55235 0.0 27.218061 3 CGCTATC 32940 0.0 26.75025 94 CAACGCA 56375 0.0 26.645117 5 AACGCAG 57960 0.0 25.996885 6 GCCGTCT 10645 0.0 25.87967 90-91 TATCAAC 59160 0.0 25.650194 2 ATGCCGT 10430 0.0 25.263693 88-89 TATGCCG 9840 0.0 25.117807 86-87 TGCCGTC 10500 0.0 24.040129 88-89 CCGTCTT 10830 0.0 23.910757 90-91 TCGTATG 11710 0.0 22.709614 84-85 ACGCAGA 66950 0.0 22.480724 7 CGCAGAG 67320 0.0 22.338284 8 CTATCTC 36140 0.0 21.905401 94 TCTCGTA 11745 0.0 21.853304 82-83 >>END_MODULE