##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139977_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8771875 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.86790190238689 31.0 31.0 34.0 30.0 34.0 2 32.062441952262205 33.0 31.0 34.0 30.0 34.0 3 32.115629554684716 33.0 31.0 34.0 30.0 34.0 4 35.80616230851443 37.0 35.0 37.0 35.0 37.0 5 35.676525258282865 37.0 35.0 37.0 33.0 37.0 6 35.69359116494478 37.0 35.0 37.0 33.0 37.0 7 35.5827902244389 37.0 35.0 37.0 33.0 37.0 8 35.5688022230139 37.0 35.0 37.0 33.0 37.0 9 37.13096014250089 39.0 37.0 39.0 33.0 39.0 10-11 37.03718070537941 39.0 37.0 39.0 33.0 39.0 12-13 37.00265918061988 39.0 37.0 39.0 33.0 39.0 14-15 38.16215455646598 40.0 37.0 41.0 33.0 41.0 16-17 38.165813295333095 40.0 37.5 41.0 33.0 41.0 18-19 38.199433872461704 40.0 37.5 41.0 33.0 41.0 20-21 38.172607188186596 40.0 38.0 41.0 33.0 41.0 22-23 38.09022775381706 40.0 37.0 41.0 33.0 41.0 24-25 38.012748416892705 40.0 37.0 41.0 33.0 41.0 26-27 37.843777424796954 40.0 37.0 41.0 32.5 41.0 28-29 37.7396829732249 40.0 37.0 41.0 32.0 41.0 30-31 37.62069726299656 39.5 37.0 41.0 32.0 41.0 32-33 37.7938502785171 40.0 37.0 41.0 33.0 41.0 34-35 37.77814593945001 40.0 37.0 41.0 33.0 41.0 36-37 37.69545353048453 40.0 37.0 41.0 32.5 41.0 38-39 37.50538204206022 40.0 37.0 41.0 32.0 41.0 40-41 37.52592263095603 40.0 37.0 41.0 32.0 41.0 42-43 37.496683579979745 40.0 36.5 41.0 32.0 41.0 44-45 37.48033136704876 39.5 36.5 41.0 32.0 41.0 46-47 37.515800049998944 40.0 37.0 41.0 32.0 41.0 48-49 37.44145560584822 40.0 36.0 41.0 31.5 41.0 50-51 37.36595313735485 39.0 36.0 41.0 31.0 41.0 52-53 37.23194904029947 39.0 36.0 41.0 31.0 41.0 54-55 37.14036824185273 39.0 36.0 40.5 31.0 41.0 56-57 37.00933590401121 39.0 35.0 40.0 31.0 41.0 58-59 36.87492713647797 39.0 35.0 40.0 31.0 41.0 60-61 36.69483546919803 38.5 35.0 40.0 31.0 41.0 62-63 36.47442509003106 38.0 35.0 40.0 30.0 41.0 64-65 36.28421564162605 38.0 35.0 40.0 30.0 41.0 66-67 36.01188060494212 37.5 34.0 40.0 29.5 41.0 68-69 35.74913905794567 37.0 34.0 40.0 29.0 41.0 70-71 35.47541180077252 36.5 34.0 39.0 29.0 41.0 72-73 35.18203574366325 36.0 34.0 39.0 29.0 40.0 74-75 34.8516015080071 36.0 34.0 38.5 29.0 40.0 76-77 33.80514486233034 35.0 32.0 37.0 28.0 39.0 78-79 34.14646720350089 35.0 33.0 37.0 29.0 39.0 80-81 34.038046890004516 35.0 33.0 37.0 29.0 39.0 82-83 33.810642526548264 35.0 33.0 36.0 29.0 38.5 84-85 33.56804993154508 35.0 33.0 36.0 29.0 37.0 86-87 33.33952598877899 35.0 33.0 35.5 29.0 37.0 88-89 33.10843008886708 35.0 32.5 35.0 29.0 36.5 90-91 32.991740524406126 34.0 32.0 35.0 29.0 36.0 92-93 32.91017136046357 34.0 32.0 35.0 29.0 36.0 94-95 32.85093142192838 34.0 32.0 35.0 29.0 36.0 96-97 32.76835240348812 34.0 32.0 35.0 29.0 35.0 98-99 32.899181039695556 34.0 32.0 35.0 29.0 35.0 100-101 32.43673295671603 34.0 31.5 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 60.0 21 453.0 22 2109.0 23 6789.0 24 17429.0 25 36271.0 26 63346.0 27 96966.0 28 135935.0 29 176996.0 30 224045.0 31 275239.0 32 337402.0 33 424114.0 34 552904.0 35 753539.0 36 1122633.0 37 1756970.0 38 1959721.0 39 806960.0 40 21984.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.1524303526897 23.782087638047738 16.275323120769507 23.790158888493053 2 13.571599655759758 23.63053751569949 41.25775597908794 21.54010684945281 3 16.513111454430707 28.24924941905217 32.396380156937994 22.84125896957913 4 11.86843177769861 20.302728892055573 40.008778054862844 27.820061275382972 5 11.994094763092269 38.94039757748486 36.97696330602066 12.08854435340221 6 28.056977556109725 40.805164232276454 19.024290701816888 12.113567509796937 7 24.3698297114357 33.62031492696829 25.02118418240114 16.98867117919487 8 22.89121767011044 38.670500890630564 21.890405415033847 16.547876024225154 9 24.651286070537942 16.693888136800854 22.137798361239756 36.51702743142145 10-11 23.010604916280727 27.718680441752763 30.41862771642323 18.852086925543286 12-13 23.695885999287494 25.37102386889918 30.30905593159957 20.62403420021375 14-15 20.96774634841468 26.92692269326683 27.59273245457784 24.512598503740648 16-17 20.68446597791236 29.927438546490915 28.336228001425006 21.051867474171715 18-19 20.686215888849304 29.18888493053082 29.890747417171358 20.234151763448523 20-21 21.42893462678151 28.41994723006885 29.663887255718464 20.487230887431178 22-23 21.130779385409724 28.382989800155656 29.509940452830307 20.97629036160431 24-25 20.97731598737834 28.50031587225133 29.556211318906776 20.966156821463553 26-27 21.04500926984602 28.596485182907884 29.397078352647554 20.961427194598535 28-29 21.01086823266684 28.658651289903474 29.4528340481644 20.877646429265283 30-31 21.249561262396426 28.514438902385503 29.343873663225157 20.89212617199291 32-33 21.127716387882668 28.600205434052427 29.28201245222101 20.990065725843895 34-35 21.21541603397772 28.637675372420635 29.28721433706636 20.859694256535285 36-37 21.171350389122377 28.5848167312244 29.273461397057975 20.970371482595244 38-39 21.140194049752388 28.643746437683532 29.309193386902805 20.906866125661278 40-41 21.26774232547848 28.52977192789794 29.24567316078679 20.956812585836794 42-43 21.189126697299187 28.693845912850907 28.972875786631295 21.144151603218603 44-45 21.293790031686395 28.788936747051743 28.770847473588656 21.14642574767321 46-47 21.362133036356642 28.706653059479947 28.61296237353399 21.31825153062942 48-49 21.31430876857284 28.81850934038902 28.614128387445962 21.253053503592177 50-51 21.308289813312665 28.86709671496427 28.509498972745156 21.315114498977906 52-53 21.416649049773866 28.812556158626073 28.45367328276597 21.317121508834095 54-55 21.423838512826677 28.72749804310697 28.455059553014856 21.393603891051498 56-57 21.450201350300983 28.779657240863006 28.420095575271905 21.350045833564106 58-59 21.404628458589624 28.842566298420792 28.45486523384127 21.297940009148313 60-61 21.448093745742273 28.886149572387033 28.38345477347668 21.282301908394018 62-63 21.475933652573453 28.876948578920747 28.334349155523817 21.312768612981984 64-65 21.41939164315926 28.808644155060335 28.353005319274338 21.418958882506065 66-67 21.49018318534162 28.844261592212696 28.220837836733732 21.444717385711954 68-69 21.471908476347288 28.808920663829905 28.277735873155862 21.44143498666694 70-71 21.464872653503555 28.60839312836082 28.35990857988872 21.5668256382469 72-73 21.48146214042846 28.681029692474556 28.326454215544434 21.51105395155255 74-75 21.39180904824705 28.76417603444903 28.269407278521413 21.574607638782506 76-77 21.487353054318916 28.732784134105426 28.22378851365215 21.556074297923505 78-79 21.439873804776212 28.760189236922866 28.23153356970476 21.56840338859616 80-81 21.47164798838648 28.730608364103364 28.2446364102798 21.553107237230353 82-83 21.46027918123951 28.722463190567666 28.309122990246706 21.50813463794612 84-85 21.56642974004528 28.71519363357783 28.2265647652993 21.49181186107759 86-87 21.42604040545957 28.718818238006495 28.26970552763641 21.585435828897527 88-89 21.488380005155783 28.693795974892538 28.240619173516063 21.577204846435617 90-91 21.46738368876769 28.71439259351323 28.31194726119368 21.506276456525395 92-93 21.48571361221525 28.711783333056772 28.263681606699294 21.538821448028685 94-95 21.32639512114235 28.766260643704406 28.329318144707543 21.578026090445697 96-97 21.33423900876484 28.821443932566453 28.35704013805835 21.487276920610356 98-99 21.42322241177848 29.428727433471362 28.464091472652765 20.6839586820974 100-101 21.946506916409685 32.06666687018963 25.801963131561944 20.184863081838746 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2391.0 1 1998.0 2 2313.0 3 3157.0 4 4027.5 5 5950.5 6 7571.0 7 8933.0 8 9882.5 9 9824.0 10 9262.5 11 8764.0 12 9790.0 13 13258.0 14 21292.5 15 32301.0 16 40821.5 17 45075.0 18 46447.0 19 46031.0 20 44671.5 21 43940.0 22 45583.5 23 51601.0 24 62680.5 25 79094.0 26 100294.0 27 124772.0 28 153190.5 29 183855.0 30 211826.5 31 238795.0 32 266139.5 33 289981.5 34 310839.0 35 327829.5 36 342480.5 37 353999.0 38 358840.0 39 359409.5 40 358951.0 41 357684.5 42 353455.0 43 348262.5 44 343452.0 45 339563.0 46 335498.5 47 329859.5 48 322625.5 49 312584.0 50 300669.5 51 286145.5 52 268682.0 53 250218.5 54 230454.0 55 208969.0 56 187944.5 57 166970.0 58 146033.5 59 125782.5 60 105408.5 61 85867.0 62 68346.5 63 53035.5 64 39772.5 65 29650.5 66 22445.5 67 17504.5 68 13718.5 69 10358.0 70 7717.5 71 5767.5 72 4324.0 73 3260.0 74 2519.5 75 1972.5 76 1472.5 77 1026.0 78 697.5 79 496.5 80 351.0 81 250.0 82 178.5 83 126.0 84 94.5 85 63.5 86 42.5 87 36.0 88 30.5 89 23.5 90 16.5 91 10.0 92 7.0 93 5.5 94 4.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0010716066975418597 3 3.4200213751335945E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.002502421905483126 22-23 3.534553164639373E-4 24-25 0.0012259536322668258 26-27 0.011659398176547701 28-29 2.796611306128774E-4 30-31 0.002519660205823672 32-33 0.0028795661804741483 34-35 0.0016302500941412026 36-37 0.057150157847272204 38-39 0.023480916292475187 40-41 0.023520942880783744 42-43 0.003145751284343931 44-45 0.0016917739326267004 46-47 0.0036591455208745895 48-49 0.0030653794241133703 50-51 7.34680514766957E-4 52-53 9.545154423772184E-4 54-55 0.001270553437658106 56-57 0.011822603698234886 58-59 0.008942765983702687 60-61 0.004748458494415331 62-63 0.0024763052144077197 64-65 0.0012207576861875077 66-67 4.437578089954145E-4 68-69 8.048789386206578E-4 70-71 3.3357201522929704E-5 72-73 3.6433013653879086E-4 74-75 1.432963119350543E-4 76-77 0.003279236516418033 78-79 6.70949280008521E-4 80-81 5.807859847559261E-4 82-83 3.8766646326142363E-4 84-85 0.002590275654079164 86-87 0.0034385312365474846 88-89 0.04107201325450723 90-91 3.883930784697953E-4 92-93 5.195220490197744E-4 94-95 1.9777916152869366E-4 96-97 0.01600575752284822 98-99 1.1892083083528803E-4 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 216.0 20-21 790.0 22-23 1557.0 24-25 2908.0 26-27 4282.0 28-29 7145.0 30-31 16174.0 32-33 21568.0 34-35 30688.0 36-37 47741.0 38-39 50694.0 40-41 53729.0 42-43 63636.0 44-45 75032.0 46-47 75669.0 48-49 69153.0 50-51 63662.0 52-53 63391.0 54-55 70068.0 56-57 73538.0 58-59 74847.0 60-61 73421.0 62-63 72161.0 64-65 77294.0 66-67 82852.0 68-69 83832.0 70-71 84321.0 72-73 83141.0 74-75 84689.0 76-77 86507.0 78-79 93969.0 80-81 95219.0 82-83 92820.0 84-85 94480.0 86-87 99505.0 88-89 107436.0 90-91 115563.0 92-93 123411.0 94-95 156542.0 96-97 204287.0 98-99 726013.0 100-101 5267924.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.58890912428295 #Duplication Level Percentage of deduplicated Percentage of total 1 91.02597227245408 79.7286561332148 2 6.5393252878721455 11.455447367471175 3 1.429460250462015 3.756145919234765 4 0.49681268867471007 1.7406112576047943 5 0.21000002980206361 0.9196836763214832 6 0.1055899289851931 0.5549104016594141 7 0.05730852825083396 0.3513714031106088 8 0.037315364930615075 0.26147296862776787 9 0.025215234381239394 0.1987717385489285 >10 0.07172341489632855 0.9140748523929789 >50 9.702636767214549E-4 0.059030075993403604 >100 2.6912750149938946E-4 0.03862697143059573 >500 3.760811258682991E-5 0.021197234389248934 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.4200213751335945E-5 0.0 3 0.0 1.1400071250445315E-5 0.0 3.4200213751335945E-5 0.0 4 0.0 5.7000356252226574E-5 0.0 3.4200213751335945E-5 0.0 5 0.0 5.7000356252226574E-5 0.0 4.560028500178126E-5 0.0 6 7.98004987531172E-5 5.7000356252226574E-5 0.0 4.560028500178126E-5 0.0 7 9.120057000356252E-5 5.7000356252226574E-5 0.0 4.560028500178126E-5 0.0 8 9.120057000356252E-5 7.98004987531172E-5 0.0 4.560028500178126E-5 0.0 9 9.120057000356252E-5 1.3680085500534378E-4 0.0 5.7000356252226574E-5 1.1400071250445315E-5 10-11 1.0260064125400783E-4 1.596009975062344E-4 0.0 1.3680085500534378E-4 1.1400071250445315E-5 12-13 1.0260064125400783E-4 1.596009975062344E-4 0.0 1.5390096188101174E-4 1.1400071250445315E-5 14-15 1.0260064125400783E-4 2.1090131813323833E-4 0.0 1.8240114000712504E-4 2.8500178126113287E-5 16-17 1.596009975062344E-4 2.3940149625935163E-4 0.0 1.881011756323477E-4 3.4200213751335945E-5 18-19 1.9380121125757037E-4 2.565016031350196E-4 0.0 1.99501246882793E-4 4.560028500178126E-5 20-21 1.9380121125757037E-4 2.964018525115782E-4 0.0 2.0520128250801567E-4 4.560028500178126E-5 22-23 2.16601353758461E-4 3.3060206626291415E-4 0.0 2.33701460634129E-4 8.550053437833985E-5 24-25 2.16601353758461E-4 3.99002493765586E-4 0.0 2.6220163876024223E-4 1.1400071250445315E-4 26-27 2.16601353758461E-4 4.1040256501603134E-4 0.0 2.850017812611329E-4 1.1400071250445315E-4 28-29 2.16601353758461E-4 4.16102600641254E-4 0.0 4.3890274314214463E-4 1.1400071250445315E-4 30-31 2.16601353758461E-4 4.674029212682579E-4 0.0 9.234057712860706E-4 1.1400071250445315E-4 32-33 2.16601353758461E-4 4.7310295689348056E-4 0.0 0.002394014962593516 1.2540078375489848E-4 34-35 2.16601353758461E-4 5.529034556465977E-4 0.0 0.004001425008906306 1.7100106875667974E-4 36-37 2.280014250089063E-4 6.384039900249376E-4 0.0 0.006292839330245814 1.7100106875667974E-4 38-39 2.3940149625935163E-4 6.897043106519416E-4 0.0 0.010174563591022444 1.9380121125757037E-4 40-41 2.6220163876024223E-4 7.410046312789455E-4 0.0 0.01488849305308158 1.9380121125757037E-4 42-43 2.964018525115782E-4 7.638047737798361E-4 0.0 0.018946918418240113 1.9380121125757037E-4 44-45 2.964018525115782E-4 8.265051656572854E-4 0.0 0.02379194869967937 1.99501246882793E-4 46-47 3.3060206626291415E-4 8.778054862842893E-4 0.0 0.029560384752404703 2.1660135375846097E-4 48-49 3.648022800142501E-4 8.83505521909512E-4 0.0 0.03511221945137157 2.5080156750979695E-4 50-51 3.762023512646954E-4 9.861061631635196E-4 0.0 0.04071535447096544 2.5080156750979695E-4 52-53 3.762023512646954E-4 9.918061987887424E-4 0.0 0.04601638760242252 2.5080156750979695E-4 54-55 3.762023512646954E-4 9.918061987887424E-4 0.0 0.05217242607766298 2.565016031350196E-4 56-57 3.762023512646954E-4 0.0010089063056644104 0.0 0.05860206626291414 2.6220163876024223E-4 58-59 3.933024581403634E-4 0.001014606341289633 0.0 0.06486070537940862 2.6790167438546487E-4 60-61 4.1610260064125403E-4 0.0010260064125400784 0.0 0.0712219451371571 2.7360171001068756E-4 62-63 4.446027787673673E-4 0.0010260064125400784 0.0 0.07705878161738511 2.850017812611329E-4 64-65 4.446027787673673E-4 0.0011400071250445315 0.0 0.08372212326327039 2.907018168863555E-4 66-67 4.560028500178126E-4 0.00117990737442109 0.0 0.0901916636978981 3.078019237620235E-4 68-69 4.560028500178126E-4 0.001248307801923762 0.0 0.09717990737442109 3.192019950124688E-4 70-71 4.560028500178126E-4 0.0012711079444246527 0.0 0.10394014962593517 3.3060206626291415E-4 72-73 4.959030993943712E-4 0.0012882080513003207 0.0 0.1092810830067688 3.648022800142501E-4 74-75 5.073031706448166E-4 0.00135090844317777 0.0 0.11429141432133952 3.648022800142501E-4 76-77 5.187032418952618E-4 0.0014022087638047736 0.0 0.11909654435340221 3.648022800142501E-4 78-79 5.244032775204845E-4 0.0014193088706804416 0.0 0.1237477734235839 3.648022800142501E-4 80-81 5.358033487709298E-4 0.0014250089063056644 0.0 0.1266661916636979 3.762023512646954E-4 82-83 5.358033487709298E-4 0.0014364089775561098 0.0 0.1286042037762736 3.9900249376558606E-4 84-85 5.586034912718205E-4 0.0014421090131813323 0.0 0.1301660135375846 3.9900249376558606E-4 86-87 5.586034912718205E-4 0.0015048094050587816 0.0 0.13034841467759173 3.9900249376558606E-4 88-89 5.586034912718205E-4 0.0015219095119344496 0.0 0.1303940149625935 3.9900249376558606E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9200 0.0 46.342045 1 GTATCAA 15585 0.0 32.32512 1 TCAACGC 18765 0.0 25.939869 4 ATCAACG 18945 0.0 25.626032 3 CAACGCA 19135 0.0 25.393816 5 AACGCAG 19910 0.0 24.4481 6 TATCAAC 20825 0.0 23.762384 2 ACGCAGA 23055 0.0 21.113062 7 CGCAGAG 23280 0.0 20.835897 8 GTACATG 20575 0.0 19.129215 1 TACATGG 20525 0.0 18.781935 2 ACATGGG 20430 0.0 18.18177 3 AGAGTAC 25355 0.0 17.972818 10-11 GAGTACT 16925 0.0 17.183046 12-13 GCAGAGT 28055 0.0 17.122768 9 CATGGGG 14140 0.0 16.760853 4 CAGAGTA 27535 0.0 16.302631 9 AGTACTT 19255 0.0 15.7446 12-13 GTACTTT 19525 0.0 14.983101 14-15 TATACTG 5480 0.0 14.441846 5 >>END_MODULE