##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139976_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11447607 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.814648598611047 33.0 31.0 34.0 30.0 34.0 2 31.495109501924727 33.0 31.0 34.0 30.0 34.0 3 31.80605160537045 33.0 31.0 34.0 30.0 34.0 4 32.99653971349645 37.0 35.0 37.0 28.0 37.0 5 34.44019776360247 37.0 35.0 37.0 28.0 37.0 6 35.13984066713681 37.0 35.0 37.0 32.0 37.0 7 35.276447645346316 37.0 35.0 37.0 32.0 37.0 8 35.418414870461575 37.0 35.0 37.0 32.0 37.0 9 37.182886606781665 39.0 37.0 39.0 33.0 39.0 10-11 37.052677559598266 39.0 37.0 39.0 33.0 39.0 12-13 36.94591620764061 39.0 37.0 39.0 32.5 39.0 14-15 38.28266798467138 40.0 38.0 41.0 33.0 41.0 16-17 38.27489924313439 40.0 38.0 41.0 32.5 41.0 18-19 38.21533758103331 40.0 38.0 41.0 33.0 41.0 20-21 38.28429129824757 40.0 38.0 41.0 32.5 41.0 22-23 38.322521295710956 40.0 38.0 41.0 32.5 41.0 24-25 38.20605803799923 40.0 38.0 41.0 32.0 41.0 26-27 38.112746307960904 40.0 38.0 41.0 32.0 41.0 28-29 38.107887874597566 40.0 38.0 41.0 32.0 41.0 30-31 38.04391440505627 40.0 37.0 41.0 32.0 41.0 32-33 37.943087076064046 40.0 37.0 41.0 32.0 41.0 34-35 37.82337228192377 40.0 37.0 41.0 31.0 41.0 36-37 37.77288877999164 40.0 37.0 41.0 31.0 41.0 38-39 37.679476192764405 40.0 37.0 41.0 31.0 41.0 40-41 37.62196604216669 40.0 37.0 41.0 31.0 41.0 42-43 37.60481994506737 40.0 37.0 41.0 31.0 41.0 44-45 37.53643005133161 40.0 36.0 41.0 30.5 41.0 46-47 37.40395152178908 40.0 36.0 41.0 30.0 41.0 48-49 37.562552838839785 40.0 36.0 41.0 31.0 41.0 50-51 37.50916630955656 40.0 36.0 41.0 30.0 41.0 52-53 37.456373949688064 40.0 36.0 41.0 30.5 41.0 54-55 37.329757730792835 39.0 35.5 41.0 30.0 41.0 56-57 37.19971428188272 39.0 35.0 41.0 30.0 41.0 58-59 37.09064648617749 39.0 35.0 41.0 30.5 41.0 60-61 36.88969932704065 39.0 35.0 41.0 30.5 41.0 62-63 36.71540787598185 38.5 35.0 40.5 30.0 41.0 64-65 36.46494372119622 38.0 35.0 40.0 30.0 41.0 66-67 36.25616435689158 37.5 35.0 40.0 30.0 41.0 68-69 36.00321194750652 37.0 34.0 40.0 30.0 41.0 70-71 35.75788851899183 37.0 34.0 39.0 30.0 41.0 72-73 35.45394771445508 36.0 34.0 39.0 30.0 41.0 74-75 35.2798344424573 36.0 34.0 39.0 30.0 40.5 76-77 35.082734658282945 35.5 34.0 38.5 30.0 40.0 78-79 34.82288429759484 35.0 34.0 37.0 30.0 39.0 80-81 34.567810040840044 35.0 34.0 37.0 30.0 39.0 82-83 34.306301799679666 35.0 34.0 36.0 30.0 39.0 84-85 34.092561380313136 35.0 34.0 36.0 30.0 37.0 86-87 33.90874006231925 35.0 34.0 36.0 29.0 37.0 88-89 33.769316227580035 35.0 34.0 35.0 29.0 37.0 90-91 33.62999471563904 35.0 34.0 35.0 29.0 36.0 92-93 33.59172678963441 35.0 34.0 35.0 29.0 36.0 94-95 33.56413666259685 35.0 34.0 35.0 29.0 36.0 96-97 33.566264129226795 35.0 34.0 35.0 29.5 36.0 98-99 33.60306478611292 35.0 34.0 35.0 30.0 35.5 100-101 33.218590767395085 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 3.0 16 10.0 17 78.0 18 474.0 19 1843.0 20 4771.0 21 10804.0 22 19776.0 23 33398.0 24 54078.0 25 85947.0 26 132164.0 27 190618.0 28 214951.0 29 177825.0 30 211395.0 31 258303.0 32 323529.0 33 423570.0 34 578485.0 35 817938.0 36 1248268.0 37 2163872.0 38 2829935.0 39 1583960.0 40 81612.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.68348144725793 21.041288367079687 14.609725857989359 24.665504327673023 2 13.912833573464292 20.948393552783838 42.41114006117893 22.727632812572935 3 17.015078292697567 27.097535016829514 31.404308240876333 24.483078449596583 4 11.537736468322485 18.75733517959539 39.39955651873224 30.30537183334988 5 12.468433243226833 38.157581983592145 36.20192591175503 13.17205886142599 6 28.41347661843523 39.17523646272947 19.06931297912792 13.34197393970738 7 24.98707468234126 33.32841980488079 23.70840098900852 17.976104523769436 8 23.72101364642296 37.05360504464627 21.695399763547492 17.52998154538328 9 24.916412427959635 16.920815107129673 21.528891490119086 36.6338809747916 10-11 23.490307162666692 27.158609539802676 29.46340712545057 19.88767617208006 12-13 24.544905007424937 24.529711662915936 29.23804062984211 21.687342699817012 14-15 21.74799502655383 25.870576925957945 26.954075202954193 25.427352844534035 16-17 21.349288365498765 29.112319710961 27.524151371598737 22.014240551941498 18-19 21.254696025792402 28.005018748994747 29.342390721195024 21.39789450401783 20-21 22.24395647387392 27.330404764386373 29.028255148417042 21.397383613322663 22-23 21.819245949300885 27.415220745242124 29.02801572435453 21.737517581102463 24-25 21.66585229591256 27.391430367797852 29.335547896384018 21.60716943990557 26-27 21.8376850151436 27.617158976898175 29.093653912747275 21.45150209521095 28-29 21.387801924012066 27.482713615673056 29.20860628516792 21.920878175146964 30-31 22.07755584922603 27.412732702096143 29.16513951642927 21.344571932248556 32-33 22.063602558522792 27.318646454320817 29.327086580536637 21.290664406619754 34-35 21.387692300507258 27.477977748574318 29.6358550402673 21.49847491065112 36-37 21.8965379311834 27.394009551401304 29.20995454739338 21.499497970021917 38-39 21.459314397919684 27.366506402159374 29.446607791477035 21.7275714084439 40-41 21.71641132207209 27.29956902056933 29.39242073128923 21.59159892606935 42-43 21.86871399273006 27.220448689205806 29.318393880955945 21.592443437108187 44-45 21.56726152068931 27.737551191738895 28.93780600879014 21.75738127878165 46-47 22.002841682596106 27.217803826867353 28.421958426295014 22.357396064241524 48-49 21.87393553340341 27.329733590677037 28.604277792619758 22.192053083299793 50-51 21.520375411814268 27.66374155822416 28.613410534239677 22.2024724957219 52-53 21.741097804189966 27.74727140897862 28.65584001815471 21.85579076867671 54-55 21.72352426383439 27.70492456289701 28.35333564066498 22.218215532603622 56-57 22.010309122087612 27.993205974711806 27.962149938102055 22.03433496509853 58-59 21.55827287200816 28.34122460810238 28.538565202416144 21.561937317473316 60-61 21.80662954741814 28.56484374846942 27.8105047342715 21.818021969840938 62-63 21.73561152059083 28.8018287551549 27.81170213493127 21.650857589322996 64-65 21.45662447740289 28.68815986388047 27.911203012861225 21.94401264585542 66-67 21.624916370323323 28.669207337343767 27.66518935707748 22.04068693525543 68-69 21.755305143702376 28.50351234297399 27.89326506575618 21.847917447567454 70-71 21.773687650567712 27.9111270687148 28.084311240886635 22.230874039830848 72-73 21.82929105388776 27.890474215569522 27.960521678573112 22.3197130519696 74-75 21.6964638123 28.018107526985027 27.881679272176264 22.403749388538714 76-77 21.796452886208343 27.92853187084516 27.907430819041373 22.36758442390513 78-79 21.907877508685434 27.850052952370387 27.8847302574147 22.357339281529484 80-81 21.959184354724805 27.7635169438272 27.794168249248948 22.483130452199052 82-83 22.038956158166283 28.0172155985547 27.865253358150106 22.078574885128912 84-85 22.142757868915613 27.762005869010725 27.658574957547756 22.43666130452591 86-87 21.650081531485593 28.128093240392403 27.819935164420873 22.401890063701128 88-89 22.163005305389703 27.78267266475314 27.80556982962351 22.24875220023365 90-91 22.231782629184675 27.988384634569837 27.84739247084447 21.932440265401024 92-93 22.002287996101217 28.066538411595328 27.70154600338736 22.229627588916095 94-95 22.110556165952243 27.82053845692577 27.77292912714133 22.295976249980658 96-97 21.94053192944459 28.15202439854363 27.977910602495427 21.929533069516356 98-99 22.29533572183663 28.528563980158523 28.008444267990708 21.167656030014143 100-101 22.79950810537305 31.173138795840245 25.24987919688524 20.777473901901466 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3111.0 1 2635.5 2 3511.0 3 4959.0 4 6495.0 5 10691.0 6 14066.5 7 16111.0 8 16789.0 9 15281.0 10 12811.5 11 10484.5 12 11444.0 13 16543.5 14 29072.0 15 46478.5 16 60680.5 17 68650.0 18 69629.5 19 65258.5 20 58424.0 21 52363.0 22 50682.0 23 56205.5 24 68367.0 25 86601.0 26 111895.5 27 139770.0 28 165977.5 29 189525.5 30 209804.0 31 230840.0 32 259049.5 33 290393.0 34 322154.0 35 350640.5 36 378715.0 37 402759.0 38 412280.0 39 420031.0 40 434616.5 41 443526.5 42 446571.5 43 453062.0 44 459135.0 45 465042.5 46 476696.5 47 494906.5 48 512342.0 49 504106.5 50 478823.0 51 456244.0 52 422284.0 53 388095.0 54 360627.5 55 334237.0 56 309872.5 57 282549.5 58 248599.5 59 213865.0 60 178836.5 61 139978.0 62 106245.5 63 80006.5 64 58408.0 65 42952.5 66 31768.5 67 24025.0 68 18422.0 69 13841.5 70 10385.5 71 7769.5 72 5817.0 73 4147.0 74 2977.0 75 2151.0 76 1459.0 77 933.5 78 626.5 79 443.5 80 311.0 81 216.5 82 156.0 83 106.5 84 76.0 85 55.0 86 42.0 87 36.0 88 29.5 89 22.0 90 15.0 91 10.0 92 5.5 93 2.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.74946606744973 3 0.0065865293943092205 4 8.57625528199911 5 3.668889052532988E-4 6 0.07508119382505007 7 0.026328646676986728 8 5.678042581301053E-4 9 2.7953440400251337E-4 10-11 0.2900082087024825 12-13 0.3032511510921016 14-15 1.0045767643840323E-4 16-17 1.4850265212633523E-4 18-19 0.47459263757045467 20-21 1.5289039065111083E-4 22-23 1.5729572986660534E-4 24-25 0.1723315920680263 26-27 0.15236623974471877 28-29 1.0939283650199164E-4 30-31 1.3144611184811E-4 32-33 1.1419689169237379E-4 34-35 3.436610680607087E-4 36-37 2.699078618629262E-4 38-39 0.0014779046357105295 40-41 0.001774616053302296 42-43 0.0011828095338060056 44-45 8.836980888297874E-4 46-47 0.0013256774844864663 48-49 0.0024134108638085745 50-51 3.990091242120567E-4 52-53 0.0016283683734696947 54-55 5.390635502496437E-4 56-57 0.009319791840981738 58-59 1.4094001155708094E-4 60-61 0.0027672143383823157 62-63 0.0015255573955803017 64-65 0.0014230694184286087 66-67 0.005130952202718796 68-69 0.002011481081300207 70-71 0.00251983272693011 72-73 0.0034740053851307186 74-75 6.778401046713218E-4 76-77 3.076102948854824E-4 78-79 7.480326332239295E-4 80-81 4.53190705743938E-4 82-83 0.0016001658801329168 84-85 2.1512677505772617E-4 86-87 5.271157509520169E-4 88-89 9.861956395185764E-5 90-91 3.820751949847282E-4 92-93 0.0 94-95 0.0 96-97 3.686767331800457E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 955.0 20-21 2438.0 22-23 3498.0 24-25 4954.0 26-27 6671.0 28-29 11441.0 30-31 26210.0 32-33 33224.0 34-35 43496.0 36-37 62892.0 38-39 75209.0 40-41 79879.0 42-43 92681.0 44-45 112638.0 46-47 112138.0 48-49 104186.0 50-51 92439.0 52-53 80467.0 54-55 86516.0 56-57 100086.0 58-59 76611.0 60-61 116055.0 62-63 114892.0 64-65 122369.0 66-67 132953.0 68-69 136165.0 70-71 120418.0 72-73 102973.0 74-75 101941.0 76-77 106259.0 78-79 109843.0 80-81 111943.0 82-83 105333.0 84-85 104631.0 86-87 106535.0 88-89 111685.0 90-91 115788.0 92-93 117205.0 94-95 127184.0 96-97 189023.0 98-99 941158.0 100-101 7044625.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.52760601460976 #Duplication Level Percentage of deduplicated Percentage of total 1 88.57246049132598 72.21100662681414 2 7.1685236137088975 11.688651377697715 3 2.1585442127161425 5.27942826418313 4 0.8823059577290314 2.877291700243016 5 0.4375486273749333 1.7836146052428428 6 0.24878478052505149 1.2169696541446535 7 0.15290470445590798 0.8726168151863127 8 0.10163842904380564 0.6629070239221805 9 0.06848626222870932 0.5025168903955917 >10 0.20483102097895822 2.4502711581590115 >50 0.002961332336741532 0.1589526127442973 >100 8.915727424882375E-4 0.13518814584591252 >500 5.9500039420724636E-5 0.03224173926231733 >1k 5.949479383561916E-5 0.12834338615890004 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.6206350375235626E-5 2 0.0 0.0 0.0 2.6206350375235626E-5 2.6206350375235626E-5 3 0.0 0.0 0.0 2.6206350375235626E-5 2.6206350375235626E-5 4 0.0 0.0 0.0 2.6206350375235626E-5 2.6206350375235626E-5 5 0.0 8.735450125078543E-6 0.0 2.6206350375235626E-5 2.6206350375235626E-5 6 0.0 8.735450125078543E-6 0.0 2.6206350375235626E-5 6.988360100062834E-5 7 0.0 8.735450125078543E-6 0.0 2.6206350375235626E-5 6.988360100062834E-5 8 0.0 8.735450125078543E-6 0.0 2.6206350375235626E-5 6.988360100062834E-5 9 0.0 8.735450125078543E-6 0.0 4.3677250625392715E-5 7.861905112570689E-5 10-11 0.0 8.735450125078543E-6 0.0 7.861905112570689E-5 7.861905112570689E-5 12-13 0.0 2.620635037523563E-5 0.0 8.735450125078543E-5 8.298677618824616E-5 14-15 0.0 7.861905112570689E-5 0.0 9.17222263133247E-5 1.9217990275172792E-4 16-17 0.0 1.1792857668856032E-4 0.0 1.0045767643840323E-4 2.445926035021992E-4 18-19 0.0 1.2666402681363887E-4 0.0 1.048254015009425E-4 3.013730293152097E-4 20-21 0.0 1.3103175187617814E-4 0.0 1.1792857668856032E-4 3.668889052532988E-4 22-23 0.0 1.3103175187617814E-4 0.0 1.3976720200125668E-4 3.930952556285344E-4 24-25 0.0 1.6160582731395304E-4 0.0 2.3148942831458137E-4 4.3240478119138784E-4 26-27 0.0 1.834444526266494E-4 0.0 4.0619843081615226E-4 4.5861113156662347E-4 28-29 0.0 1.8781217768918868E-4 0.0 0.001528703771888745 4.717143067542413E-4 30-31 0.0 1.9217990275172795E-4 0.0 0.005734823007114063 4.848174819418591E-4 32-33 0.0 1.9217990275172795E-4 0.0 0.01593346102814326 5.284947325672519E-4 34-35 8.735450125078543E-6 2.09650803001885E-4 0.0 0.03039499871021079 5.678042581301053E-4 36-37 8.735450125078543E-6 2.445926035021992E-4 0.0 0.050949512854520596 5.852751583802624E-4 38-39 8.735450125078543E-6 2.882698541275919E-4 0.0 0.08357205134662643 6.11481508755498E-4 40-41 8.735450125078543E-6 3.232116546279061E-4 0.0 0.1461528160426891 6.202169588805765E-4 42-43 8.735450125078543E-6 3.494180050031417E-4 0.0 0.17354281990987286 6.245846839431158E-4 44-45 8.735450125078543E-6 3.494180050031417E-4 0.0 0.20732717326861413 6.464233092558122E-4 46-47 8.735450125078543E-6 3.494180050031417E-4 0.0 0.24034280701634847 6.813651097561264E-4 48-49 8.735450125078543E-6 3.53785730065681E-4 0.0 0.2679468294115967 7.07571460131362E-4 50-51 8.735450125078543E-6 3.5815345512822027E-4 0.0 0.2908468119144901 7.250423603815191E-4 52-53 8.735450125078543E-6 3.6252118019075954E-4 0.0 0.32887222630895696 7.425132606316762E-4 54-55 8.735450125078543E-6 3.974629806910737E-4 0.0 0.4178165794825067 7.643518859443725E-4 56-57 8.735450125078543E-6 4.01830705753613E-4 0.0 0.5099799460271478 7.730873360694511E-4 58-59 8.735450125078543E-6 4.105661558786915E-4 0.0 0.5544783289642979 7.774550611319903E-4 60-61 8.735450125078543E-6 4.4550795637900566E-4 0.0 0.8933963229170953 7.774550611319903E-4 62-63 8.735450125078543E-6 4.542434065040842E-4 0.0 0.9002885930657822 7.905582363196082E-4 64-65 8.735450125078543E-6 4.542434065040842E-4 0.0 0.9065431753553385 7.992936864446866E-4 66-67 8.735450125078543E-6 4.8044975687931983E-4 0.0 0.9121338634353887 8.123968616323044E-4 68-69 8.735450125078543E-6 4.8044975687931983E-4 0.0 0.9179953504693165 8.255000368199222E-4 70-71 8.735450125078543E-6 4.848174819418591E-4 0.0 0.923450639072428 8.473386621326186E-4 72-73 8.735450125078543E-6 4.891852070043984E-4 0.0 0.9281852530402206 9.521640636335611E-4 74-75 8.735450125078543E-6 4.891852070043984E-4 0.0 0.9317405812411275 0.001013312214509111 76-77 8.735450125078543E-6 4.979206571294769E-4 0.0 0.9349552268871564 0.0010264153896967288 78-79 8.735450125078543E-6 5.022883821920161E-4 0.0 0.9374055206472409 0.001030783114759268 80-81 8.735450125078543E-6 5.15391557379634E-4 0.0 0.9386590577401897 0.0010657249152595822 82-83 8.735450125078543E-6 5.241270075047126E-4 0.0 0.9391919201978195 0.0011399762413227498 84-85 8.735450125078543E-6 5.241270075047126E-4 0.0 0.9395631768281354 0.001222963017510996 86-87 8.735450125078543E-6 5.241270075047126E-4 0.0 0.9396723699546988 0.001222963017510996 88-89 8.735450125078543E-6 5.328624576297911E-4 0.0 0.9397509890058245 0.0012579048180113102 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13260 0.0 54.62404 1 GTATCAA 25235 0.0 44.22571 1 ATCAACG 31295 0.0 35.036716 3 TCAACGC 31960 0.0 34.362843 4 TATCAAC 32705 0.0 33.841835 2 CAACGCA 33215 0.0 31.691444 5 AACGCAG 34760 0.0 30.52062 6 CTTATAC 22385 0.0 28.147415 1 ACGCAGA 39030 0.0 27.061817 7 CGCAGAG 39685 0.0 26.618465 8 TATACAC 27000 0.0 25.061678 3 GCAGAGT 45900 0.0 22.75514 9 TTATACA 29280 0.0 22.118628 2 TACATGG 30690 0.0 21.147581 2 GTACATG 33065 0.0 20.313145 1 GAGTACT 28690 0.0 19.837875 12-13 ACATGGG 32575 0.0 19.472486 3 AGAGTAC 42555 0.0 19.350616 10-11 CAGAGTA 45055 0.0 19.024715 10-11 CATGGGG 21960 0.0 18.94792 4 >>END_MODULE