##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139973_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14772887 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.826363391258596 33.0 31.0 34.0 30.0 34.0 2 31.46291242869454 33.0 31.0 34.0 29.0 34.0 3 31.777672908484305 33.0 31.0 34.0 30.0 34.0 4 33.00206818071511 37.0 35.0 37.0 28.0 37.0 5 34.45871676944392 37.0 35.0 37.0 28.0 37.0 6 35.15112767057651 37.0 35.0 37.0 32.0 37.0 7 35.290362134361416 37.0 35.0 37.0 32.0 37.0 8 35.4309977460736 37.0 35.0 37.0 32.0 37.0 9 37.19008044940708 39.0 37.0 39.0 33.0 39.0 10-11 37.06194222564621 39.0 37.0 39.0 33.0 39.0 12-13 36.954367484162034 39.0 37.0 39.0 32.5 39.0 14-15 38.28963299455279 40.0 38.0 41.0 33.0 41.0 16-17 38.286639774608716 40.0 38.0 41.0 33.0 41.0 18-19 38.23062509717972 40.0 38.0 41.0 33.0 41.0 20-21 38.29780976850368 40.0 38.0 41.0 33.0 41.0 22-23 38.33431344737538 40.0 38.0 41.0 33.0 41.0 24-25 38.21122369670628 40.0 38.0 41.0 32.0 41.0 26-27 38.11579534284776 40.0 38.0 41.0 32.0 41.0 28-29 38.13086891474461 40.0 38.0 41.0 32.0 41.0 30-31 38.0758627187478 40.0 37.5 41.0 32.0 41.0 32-33 37.96730884248278 40.0 37.0 41.0 32.0 41.0 34-35 37.84587502206363 40.0 37.0 41.0 31.0 41.0 36-37 37.79623181037225 40.0 37.0 41.0 31.0 41.0 38-39 37.7015343327833 40.0 37.0 41.0 31.0 41.0 40-41 37.64286931419058 40.0 37.0 41.0 31.0 41.0 42-43 37.623554202874345 40.0 37.0 41.0 31.0 41.0 44-45 37.556698529139915 40.0 36.5 41.0 31.0 41.0 46-47 37.416594589827774 40.0 36.0 41.0 30.0 41.0 48-49 37.58696019885646 40.0 36.5 41.0 31.0 41.0 50-51 37.53028623081781 40.0 36.0 41.0 31.0 41.0 52-53 37.464396198608654 40.0 36.0 41.0 30.0 41.0 54-55 37.33142642792183 39.0 36.0 41.0 30.0 41.0 56-57 37.18015125543856 39.0 35.0 41.0 30.0 41.0 58-59 37.04962894373331 39.0 35.0 41.0 30.5 41.0 60-61 36.82546543862263 39.0 35.0 41.0 30.0 41.0 62-63 36.64458252263086 38.0 35.0 40.5 30.0 41.0 64-65 36.37884448854446 38.0 35.0 40.0 30.0 41.0 66-67 36.153965568577036 37.0 34.5 40.0 30.0 41.0 68-69 35.893063513948626 37.0 34.0 40.0 30.0 41.0 70-71 35.645456200568496 36.5 34.0 39.0 30.0 41.0 72-73 35.339650095482874 36.0 34.0 39.0 30.0 41.0 74-75 35.17376169421911 36.0 34.0 39.0 30.0 40.0 76-77 34.981200202829086 35.0 34.0 37.5 30.0 39.5 78-79 34.73287230395725 35.0 34.0 37.0 30.0 39.0 80-81 34.49180465499372 35.0 34.0 37.0 30.0 39.0 82-83 34.25012814106242 35.0 34.0 36.0 30.0 38.5 84-85 34.044298330298076 35.0 34.0 36.0 30.0 37.0 86-87 33.87338498460676 35.0 34.0 35.5 29.0 37.0 88-89 33.742352572854834 35.0 34.0 35.0 29.0 36.5 90-91 33.616352278545946 35.0 34.0 35.0 29.0 36.0 92-93 33.578000911813604 35.0 34.0 35.0 29.0 36.0 94-95 33.5579079017306 35.0 34.0 35.0 29.0 36.0 96-97 33.57226205785177 35.0 34.0 35.0 30.0 36.0 98-99 33.60994501557602 35.0 34.0 35.0 30.0 35.0 100-101 33.22241324754071 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 4.0 16 10.0 17 121.0 18 695.0 19 2734.0 20 7292.0 21 16341.0 22 29232.0 23 46201.0 24 73250.0 25 111941.0 26 168959.0 27 238494.0 28 267558.0 29 224687.0 30 266890.0 31 331174.0 32 414353.0 33 545449.0 34 748312.0 35 1061056.0 36 1625648.0 37 2807993.0 38 3662901.0 39 2011598.0 40 109994.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.29973288227278 20.651210558911064 14.31587475081885 24.733181807997312 2 14.11397091196821 20.958111145148155 41.918633821882075 23.00928412100156 3 17.557052748101402 26.788173580945067 31.034209173823022 24.620564497130506 4 11.780430841952438 18.670407519715557 39.07604008340175 30.473121554930255 5 12.772622931921443 38.059739531305816 35.87051121074897 13.297126326023767 6 28.66056218735916 38.70152087661607 18.866467953041695 13.77144898298307 7 25.27200249492761 33.05823091161681 23.53177559247421 18.13799100098137 8 23.77908241245754 36.549732640447445 21.535797911879012 18.135387035215995 9 24.922866932826153 17.04490001148729 21.516854537246612 36.515378518439945 10-11 23.88503939723192 26.849233581047294 29.10544925009018 20.1602777716306 12-13 25.0158471495957 24.20963094582965 28.95635168997846 21.81817021459619 14-15 22.04902038696059 25.54081893611223 26.728620984650654 25.681539692276534 16-17 21.58378839047524 28.840008745761658 27.320686501675027 22.25551636208807 18-19 21.520326920639032 27.986523439731574 28.94173201506663 21.551417624562767 20-21 22.418874722220774 27.053856756743766 28.64160330685831 21.885665214177152 22-23 21.98160313737006 27.283667924306982 28.63529800027639 22.09943093804657 24-25 21.986927770122257 27.407640817686072 28.831692486849263 21.773738925342403 26-27 22.035464452460136 27.59951282097155 28.843919358474963 21.521103368093346 28-29 21.751731095208584 27.830052454140166 28.720770139500495 21.69744631115076 30-31 22.34711608658285 27.35244497503014 28.643682694834045 21.65675624355297 32-33 22.01478273123392 27.510831956397425 28.743539394904126 21.730845917464524 34-35 22.090180693249874 27.137450713605393 28.849288698643647 21.923079894501086 36-37 21.8831786686194 27.42237772144187 28.935773575294743 21.758670034643984 38-39 21.810200619363464 27.096673060466642 29.14653944974816 21.94658687042173 40-41 21.998508956828868 27.036314918998848 29.077706143915638 21.887469980256647 42-43 22.13499699682852 26.985174093067954 28.82911892996813 22.050709980135398 44-45 21.834439614706266 27.410932094881286 28.558651257865712 22.19597703254674 46-47 22.439140961683638 26.918044746075083 28.102939209687833 22.53987508255345 48-49 22.282701123714695 26.993772786180593 28.205364163809143 22.51816192629557 50-51 21.746764330287697 27.245257991274606 28.423638543782133 22.58433913465557 52-53 21.92906400207875 27.32531698211981 28.484793385346798 22.260825630454644 54-55 21.954422986467375 27.161792649939876 28.190263396296267 22.69352096729648 56-57 22.333358273709084 27.460943185451796 27.681929804381838 22.523768736457285 58-59 21.948629024576324 27.814251167156804 28.269826941978554 21.967292866288314 60-61 22.22696743104406 28.220195258872472 27.552242517105608 22.00059479297786 62-63 21.84709925112312 28.58724427734986 27.495718421771475 22.069938049755546 64-65 21.766607880570387 28.548988907210692 27.44297709212494 22.241426120093976 66-67 21.92741582570789 28.4553169373782 27.197007800381822 22.420259436532092 68-69 22.028865839247718 28.102487015182525 27.447515595322088 22.421131550247665 70-71 22.243539627908927 27.491835254166652 27.558519780013118 22.706105337911307 72-73 22.235370522972513 27.4618125568572 27.746658553895042 22.556158366275245 74-75 22.05275961672682 27.656165380202175 27.654038581455914 22.637036421615093 76-77 22.28575961097266 27.62915156431435 27.429075063859088 22.656013760853906 78-79 22.31283047100547 27.575828496277722 27.47004208897928 22.641298943737528 80-81 22.217470126037732 27.485999502493407 27.520637290533823 22.77589308093504 82-83 22.308520912961534 27.494994850843657 27.644426564248377 22.552057671946436 84-85 22.593609726503473 27.530777533647978 27.460752014983527 22.414860724865022 86-87 22.132180869216118 27.74425776905592 27.56778945923991 22.555771902488054 88-89 22.312339261841345 27.642830555867974 27.559038490696956 22.48579169159372 90-91 22.35807972628566 27.658101529511203 27.646356736151333 22.3374620080518 92-93 22.40338220552126 27.65015294158012 27.554140237844482 22.392324615054136 94-95 22.254217905522893 27.630719704156377 27.610351120319425 22.50471127000131 96-97 22.074680392427762 27.726752362140967 27.806488419322477 22.392078826108797 98-99 22.370391402852942 28.2906841510493 27.77728857288249 21.561635873215263 100-101 23.132292826455807 30.7293388609148 24.888242802155194 21.250125510474195 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4044.0 1 3520.5 2 4565.0 3 6355.0 4 8207.0 5 13096.0 6 17271.5 7 20138.5 8 21552.0 9 20128.0 10 16841.0 11 13801.0 12 14950.0 13 21036.5 14 36131.0 15 57232.0 16 74327.0 17 83744.5 18 84867.0 19 79522.5 20 71344.5 21 63795.5 22 61142.0 23 66912.0 24 80556.0 25 101076.5 26 129470.5 27 161078.5 28 190976.5 29 219535.5 30 246627.5 31 274439.0 32 308137.0 33 344660.0 34 380214.5 35 415054.5 36 452850.5 37 484559.0 38 498998.0 39 508584.5 40 527808.0 41 543984.5 42 555027.5 43 577399.5 44 616589.5 45 665210.5 46 686258.0 47 700676.5 48 700020.0 49 663204.0 50 627977.5 51 600497.0 52 570307.5 53 534571.5 54 497174.0 55 459856.5 56 425682.5 57 387364.5 58 339936.0 59 291983.0 60 242699.5 61 190630.5 62 148587.0 63 113685.0 64 82736.5 65 59682.0 66 43394.5 67 32785.5 68 25455.0 69 19621.5 70 15153.5 71 11068.5 72 8040.5 73 5711.5 74 3830.5 75 2621.0 76 1790.5 77 1174.0 78 809.0 79 585.0 80 423.0 81 307.0 82 243.0 83 167.5 84 102.0 85 62.5 86 44.0 87 38.0 88 30.5 89 22.5 90 15.5 91 12.5 92 10.0 93 5.5 94 2.0 95 1.0 96 1.0 97 0.5 98 1.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.7551680995055334 3 0.006383315597012283 4 8.532259131204349 5 3.7907282442490757E-4 6 0.0740545839144373 7 0.025188035351519308 8 5.686092366373614E-4 9 2.707663031606483E-4 10-11 0.281928644008446 12-13 0.29714909482486396 14-15 8.799904852721069E-5 16-17 1.1507567884327553E-4 18-19 0.4679857092252855 20-21 2.0988058201104053E-4 22-23 1.3544963912999206E-4 24-25 0.16856368993332724 26-27 0.1546949872709403 28-29 1.0518980720269222E-4 30-31 9.8544581483711E-5 32-33 1.0562100328845884E-4 34-35 3.5209937543382143E-4 36-37 2.128700329224106E-4 38-39 0.0014093358204426026 40-41 0.001780152303155487 42-43 0.0011486548079030674 44-45 8.301147840334522E-4 46-47 0.0013452445160322282 48-49 0.0025005082084766654 50-51 3.417206857999714E-4 52-53 0.001637967425335069 54-55 4.5039509063444393E-4 56-57 0.00936479238560493 58-59 1.0892550213060159E-4 60-61 0.0027428468413292313 62-63 0.0014687479579418078 64-65 0.0013347658267820841 66-67 0.004950368525250222 68-69 0.0020540599871667117 70-71 0.0025177085581528343 72-73 0.0036272528416554537 74-75 6.011383321288456E-4 76-77 3.7331478783765587E-4 78-79 7.986701631993265E-4 80-81 4.7778999657540787E-4 82-83 0.0016002965127053512 84-85 2.4288290169288056E-4 86-87 4.875162082366892E-4 88-89 1.0422451410418236E-4 90-91 2.986734304711229E-4 92-93 0.0 94-95 0.0 96-97 6.26022523519907E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1563.0 20-21 4461.0 22-23 5533.0 24-25 7754.0 26-27 14816.0 28-29 16480.0 30-31 36685.0 32-33 45832.0 34-35 57730.0 36-37 82127.0 38-39 94873.0 40-41 100327.0 42-43 116189.0 44-45 140244.0 46-47 138630.0 48-49 126295.0 50-51 113752.0 52-53 98770.0 54-55 108285.0 56-57 119317.0 58-59 129089.0 60-61 140090.0 62-63 147619.0 64-65 166213.0 66-67 176675.0 68-69 186754.0 70-71 163017.0 72-73 139426.0 74-75 138669.0 76-77 147347.0 78-79 154330.0 80-81 151242.0 82-83 144774.0 84-85 143435.0 86-87 143515.0 88-89 150842.0 90-91 156085.0 92-93 155651.0 94-95 175732.0 96-97 249090.0 98-99 1176673.0 100-101 9006956.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.74521155579632 #Duplication Level Percentage of deduplicated Percentage of total 1 88.03897813717082 71.08725914841983 2 7.464822075903903 12.054972754904783 3 2.221283768409151 5.3807408341696 4 0.953507918806361 3.079647944965867 5 0.48221839516743054 1.9468413166945382 6 0.2594359749552482 1.2568927609767475 7 0.17530486882660162 0.9908520104115548 8 0.10587403648499917 0.6839057179397884 9 0.0748873286690233 0.5442113876605863 >10 0.220470723711565 2.6309088730696244 >50 0.0022395503251147683 0.1196472407455057 >100 8.642682943977758E-4 0.12130815931311412 >500 6.454655058116379E-5 0.040117736028966344 >1k 4.840672484005525E-5 0.06269411469948474 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 6.769157579016207E-6 6.769157579016207E-6 0.0 6 0.0 0.0 6.769157579016207E-6 6.769157579016207E-6 0.0 7 0.0 0.0 6.769157579016207E-6 6.769157579016207E-6 0.0 8 0.0 0.0 6.769157579016207E-6 6.769157579016207E-6 0.0 9 0.0 0.0 6.769157579016207E-6 2.030747273704862E-5 0.0 10-11 0.0 0.0 6.769157579016207E-6 3.384578789508104E-5 0.0 12-13 0.0 3.3845787895081035E-6 6.769157579016207E-6 5.0768681842621554E-5 0.0 14-15 0.0 1.3538315158032414E-5 6.769157579016207E-6 9.13836273167188E-5 0.0 16-17 0.0 2.030747273704862E-5 6.769157579016207E-6 1.4553688794884847E-4 0.0 18-19 0.0 2.3692051526556726E-5 6.769157579016207E-6 2.0984388494950243E-4 0.0 20-21 0.0 2.7076630316064828E-5 6.769157579016207E-6 3.3507330016130225E-4 0.0 22-23 0.0 2.7076630316064828E-5 6.769157579016207E-6 5.347634487422804E-4 0.0 24-25 0.0 3.0461209105572933E-5 6.769157579016207E-6 7.81837700376372E-4 0.0 26-27 0.0 3.384578789508104E-5 6.769157579016207E-6 0.0011609105248012795 0.0 28-29 0.0 3.384578789508104E-5 6.769157579016207E-6 0.003208580692453682 0.0 30-31 0.0 3.384578789508104E-5 6.769157579016207E-6 0.010113121423050214 0.0 32-33 0.0 3.384578789508104E-5 6.769157579016207E-6 0.02719847515248712 0.0 34-35 0.0 4.061494547409724E-5 6.769157579016207E-6 0.04945884985108191 0.0 36-37 0.0 5.0768681842621554E-5 6.769157579016207E-6 0.08128065963003711 0.0 38-39 0.0 6.0922418211145866E-5 6.769157579016207E-6 0.13572499403806446 0.0 40-41 0.0 6.0922418211145866E-5 6.769157579016207E-6 0.2219031391765198 0.0 42-43 0.0 6.0922418211145866E-5 6.769157579016207E-6 0.2782969909673038 0.0 44-45 0.0 6.430699700065397E-5 6.769157579016207E-6 0.34682117313968486 0.0 46-47 0.0 7.446073336917828E-5 6.769157579016207E-6 0.4231840397885667 0.0 48-49 0.0 7.446073336917828E-5 6.769157579016207E-6 0.49411465748028804 0.0 50-51 0.0 7.446073336917828E-5 6.769157579016207E-6 0.563650828710732 0.0 52-53 0.0 7.446073336917828E-5 6.769157579016207E-6 0.6460923988655705 3.3845787895081035E-6 54-55 0.0 7.446073336917828E-5 6.769157579016207E-6 0.7847924376596125 6.769157579016207E-6 56-57 0.0 7.446073336917828E-5 6.769157579016207E-6 0.934312974843712 6.769157579016207E-6 58-59 0.0 7.446073336917828E-5 6.769157579016207E-6 1.0390183042759347 6.769157579016207E-6 60-61 0.0 7.446073336917828E-5 6.769157579016207E-6 1.1180719110624753 6.769157579016207E-6 62-63 0.0 7.446073336917828E-5 6.769157579016207E-6 1.1488648088894202 6.769157579016207E-6 64-65 0.0 7.446073336917828E-5 1.015373636852431E-5 1.1589373153669964 6.769157579016207E-6 66-67 0.0 7.446073336917828E-5 1.3538315158032414E-5 1.164616638575791 6.769157579016207E-6 68-69 0.0 7.446073336917828E-5 1.3538315158032414E-5 1.170258731417901 6.769157579016207E-6 70-71 0.0 7.784531215868638E-5 1.3538315158032414E-5 1.175755287372062 6.769157579016207E-6 72-73 3.3845787895081035E-6 8.122989094819448E-5 1.3538315158032414E-5 1.180151855219633 6.769157579016207E-6 74-75 6.769157579016207E-6 8.122989094819448E-5 1.3538315158032414E-5 1.1835262802727726 6.769157579016207E-6 76-77 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.1866840922833837 6.769157579016207E-6 78-79 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.1895372922029392 6.769157579016207E-6 80-81 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.19090804661269 6.769157579016207E-6 82-83 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.1915409628463278 6.769157579016207E-6 84-85 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.191828652043436 6.769157579016207E-6 86-87 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.1919234202495423 6.769157579016207E-6 88-89 6.769157579016207E-6 8.799904852721069E-5 1.3538315158032414E-5 1.1919471123010688 6.769157579016207E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 33250 0.0 32.33317 1 GTATCAA 48920 0.0 28.965256 1 CTTATAC 34405 0.0 25.467564 1 ATCAACG 56025 0.0 24.485914 3 TCAACGC 57495 0.0 23.906416 4 TATACAC 38735 0.0 23.847692 3 TATCAAC 59150 0.0 23.768496 2 CAACGCA 58350 0.0 22.497211 5 TTATACA 41395 0.0 21.84702 2 AACGCAG 60770 0.0 21.774986 6 ACATCTC 37550 0.0 21.49203 8 TACATGG 40715 0.0 21.1353 2 GTACATG 43125 0.0 20.339348 1 ACGCAGA 66650 0.0 19.807758 7 CGCAGAG 67000 0.0 19.725214 8 ACATGGG 42320 0.0 19.67734 3 GAGTACT 37935 0.0 19.169382 12-13 CATCTCC 42300 0.0 19.038477 9 TATGCCG 24355 0.0 18.643417 42-43 CCGTCTT 25100 0.0 18.44117 46-47 >>END_MODULE