##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139971_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15530453 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.837071526503443 33.0 31.0 34.0 30.0 34.0 2 31.437530251049342 33.0 31.0 34.0 28.0 34.0 3 31.779504821913438 33.0 31.0 34.0 30.0 34.0 4 32.88990681727056 37.0 35.0 37.0 26.0 37.0 5 34.408106254209066 37.0 35.0 37.0 28.0 37.0 6 35.16733909822205 37.0 35.0 37.0 32.0 37.0 7 35.29331333735082 37.0 35.0 37.0 32.0 37.0 8 35.434824148400565 37.0 35.0 37.0 32.0 37.0 9 37.20111197014021 39.0 37.0 39.0 33.0 39.0 10-11 37.05949282355125 39.0 37.0 39.0 33.0 39.0 12-13 36.9563673706105 39.0 37.0 39.0 32.5 39.0 14-15 38.31937226814955 40.0 38.0 41.0 33.0 41.0 16-17 38.31487265696629 40.0 38.0 41.0 33.0 41.0 18-19 38.236441493367906 40.0 38.0 41.0 33.0 41.0 20-21 38.31037712468283 40.0 38.0 41.0 32.5 41.0 22-23 38.354979170729905 40.0 38.0 41.0 33.0 41.0 24-25 38.23020019351795 40.0 38.0 41.0 32.0 41.0 26-27 38.13949703116816 40.0 38.0 41.0 32.0 41.0 28-29 38.1588857932202 40.0 38.0 41.0 32.0 41.0 30-31 38.11278104279744 40.0 38.0 41.0 32.0 41.0 32-33 38.02055844974633 40.0 37.0 41.0 32.0 41.0 34-35 37.9007952367147 40.0 37.0 41.0 31.0 41.0 36-37 37.85173907468304 40.0 37.0 41.0 31.0 41.0 38-39 37.77341689120571 40.0 37.0 41.0 31.0 41.0 40-41 37.708651831697 40.0 37.0 41.0 31.0 41.0 42-43 37.688196572828176 40.0 37.0 41.0 31.0 41.0 44-45 37.6279672552898 40.0 37.0 41.0 31.0 41.0 46-47 37.49808698975063 40.0 36.0 41.0 30.0 41.0 48-49 37.669569160993554 40.0 37.0 41.0 31.0 41.0 50-51 37.59961771243674 40.0 36.5 41.0 30.0 41.0 52-53 37.54774463640296 40.0 36.0 41.0 30.5 41.0 54-55 37.432154029421696 39.5 36.0 41.0 30.0 41.0 56-57 37.295772487956285 39.0 36.0 41.0 30.0 41.0 58-59 37.202577245062145 39.0 35.0 41.0 30.5 41.0 60-61 37.00263726300423 39.0 35.0 41.0 30.5 41.0 62-63 36.84299863114313 39.0 35.0 41.0 30.0 41.0 64-65 36.61719986403398 38.5 35.0 40.5 30.0 41.0 66-67 36.42027550974949 38.0 35.0 40.0 30.0 41.0 68-69 36.17865538795381 37.0 34.5 40.0 30.0 41.0 70-71 35.93721547885285 37.0 34.0 39.5 30.0 41.0 72-73 35.63606930840735 36.5 34.0 39.0 30.0 41.0 74-75 35.45781168546352 36.0 34.0 39.0 30.0 41.0 76-77 35.23963968276263 36.0 34.0 39.0 30.0 40.0 78-79 34.95444191668366 35.0 34.0 37.0 30.0 39.0 80-81 34.66870456428431 35.0 34.0 37.0 30.0 39.0 82-83 34.38692628510712 35.0 34.0 36.5 30.0 39.0 84-85 34.156293252467584 35.0 34.0 36.0 30.0 37.0 86-87 33.96675087278698 35.0 34.0 36.0 29.5 37.0 88-89 33.80945190528139 35.0 34.0 35.5 29.0 37.0 90-91 33.67001775252385 35.0 34.0 35.0 29.0 36.0 92-93 33.62573058719308 35.0 34.0 35.0 29.0 36.0 94-95 33.588809324715 35.0 34.0 35.0 29.0 36.0 96-97 33.576365708832654 35.0 34.0 35.0 29.5 36.0 98-99 33.59894952490444 35.0 34.0 35.0 30.0 35.5 100-101 33.205830958937504 34.5 33.0 35.0 28.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 4.0 17 111.0 18 707.0 19 2498.0 20 7081.0 21 15779.0 22 28092.0 23 46369.0 24 73739.0 25 114561.0 26 176109.0 27 255560.0 28 293988.0 29 235276.0 30 274097.0 31 339504.0 32 424675.0 33 557523.0 34 764176.0 35 1074451.0 36 1628126.0 37 2819737.0 38 4002578.0 39 2274258.0 40 121454.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.88364666503932 21.06235407299452 13.905441135554772 25.14855812641138 2 13.811713700222588 21.038803946925793 42.52130169958156 22.628180653270057 3 17.07238104142865 26.85938630718332 31.341144067529214 24.72708858385882 4 11.378504879342696 18.931227616538905 39.58003475676801 30.11023274735039 5 12.309016460365854 38.23695158835615 36.67609634680275 12.77793560447525 6 28.439203770985728 39.41322794994246 19.148967429683708 12.998600849388103 7 25.109441559344088 33.01965958070047 23.964276667437616 17.90662219251783 8 23.148582184272776 37.80528574725338 21.909738391260273 17.136393677213572 9 24.669553175379583 16.70078789286388 21.699979478971933 36.929679452784605 10-11 23.20457096857821 27.13580842212379 30.00059805761736 19.65902255168064 12-13 24.246439223633253 24.48338722077608 29.688995580011003 21.581177975579667 14-15 21.307115279740724 26.072117644290067 26.986408984392497 25.634358091576715 16-17 21.198125911456604 29.33094670691496 27.67851655358276 21.79241082804568 18-19 21.106983015079987 28.408850611716442 29.253021208329304 21.231145164874267 20-21 21.765381540830823 27.612138349263375 29.04229380764952 21.580186302256273 22-23 21.42593938805226 27.990656097420125 28.884062348896638 21.699342165630977 24-25 21.471154205547446 27.96380854049397 29.05937232442637 21.505664929532216 26-27 21.585399947882415 28.08326983298901 28.973914830209583 21.357415388918984 28-29 21.362178080599712 27.948468058267405 29.129529083592264 21.559824777540616 30-31 21.363301720823536 27.58971796719597 29.419069210627136 21.62791110135336 32-33 21.069325072073685 28.11592701551953 29.07461498371424 21.74013292869254 34-35 21.475880244374267 27.91595174257942 29.126134890017052 21.48203312302926 36-37 21.275554874828835 27.886859517708018 29.440453520752353 21.397132086710798 38-39 21.202432047707877 27.768297475216634 29.406135438506197 21.623135038569288 40-41 21.392497065536535 27.607893271680677 29.453186792489028 21.54642287029376 42-43 21.77826276081585 27.527531890083694 29.263530153459982 21.430675195640475 44-45 21.25255760939777 28.086085259361955 29.002843464054116 21.65851366718616 46-47 21.66756116043233 27.567058737098606 28.57744925529751 22.187930847171554 48-49 21.58063757885225 27.67427044667061 28.688605415584767 22.05648655889237 50-51 21.122372500802435 27.86832995068142 28.969032810589983 22.040264737926158 52-53 21.264030844275574 27.8546063265493 28.98058768365766 21.900775145517475 54-55 21.265034457346186 27.634633248967532 28.732575729489163 22.367756564197116 56-57 21.706351415242732 27.617793432554972 28.51861043949122 22.157244712711073 58-59 21.082143433885626 27.75401111744438 29.280530189272152 21.883315259397833 60-61 21.46218366385816 28.060718686493036 28.64922052506566 21.827877124583146 62-63 20.862338060707515 28.825234852365593 28.651343047722293 21.661084039204596 64-65 20.455138214589773 28.935846653327374 28.55069932549047 22.058315806592375 66-67 20.65172655547051 29.36281118125534 28.071357980358663 21.914104282915492 68-69 20.888565483759017 29.31543125164322 27.784886067584146 22.011117197013615 70-71 20.97021189917583 28.617000907546842 27.85540703599671 22.557380157280623 72-73 20.864102538973693 28.208177564289134 27.982991915849652 22.94472798088752 74-75 21.36575783889983 27.863346209650775 27.948561541678156 22.822334409771237 76-77 21.57646080129357 27.809356340533025 27.847105188674053 22.767077669499347 78-79 21.913325905203845 27.580778151564555 27.215870699825413 23.290025243406184 80-81 21.7148112316612 28.043110458031162 27.19522894695885 23.046849363348787 82-83 21.76402028830472 28.10759009254749 27.33382833107887 22.79456128806892 84-85 21.884002155972595 28.100700985893972 27.183249809321552 22.832047048811884 86-87 22.00328846480453 28.534339655820624 27.054447546000247 22.4079243333746 88-89 22.24192585472748 28.232979367012984 27.394000805675624 22.131093972583912 90-91 21.987792965357766 28.224148512173088 27.71668918570172 22.071369336767425 92-93 21.822839093648625 27.779089024999138 27.558329576170397 22.83974230518184 94-95 21.54068105593054 27.8254169558879 28.256603296584405 22.377298691597154 96-97 21.198577553875875 28.079114704160475 28.488024661827975 22.234283080135672 98-99 21.488732017870394 28.201506109383562 28.7387889102614 21.57097296248465 100-101 22.246098139579964 30.995456248394948 26.080862518541064 20.677583093484028 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2474.0 1 2247.0 2 3487.5 3 5133.0 4 6957.0 5 11784.5 6 15637.0 7 17614.5 8 17963.0 9 16155.0 10 13528.5 11 11317.5 12 12467.5 13 17709.0 14 30454.5 15 48241.5 16 62525.5 17 70303.0 18 72295.5 19 69979.5 20 65788.5 21 62453.0 22 63247.0 23 72841.5 24 90864.5 25 115728.0 26 148535.5 27 184023.5 28 218049.0 29 252110.0 30 284178.5 31 317047.5 32 355180.0 33 394682.0 34 434687.0 35 473484.0 36 512189.5 37 547779.0 38 571325.5 39 587105.5 40 607310.0 41 625264.5 42 634931.5 43 647104.5 44 662395.5 45 686713.0 46 723520.0 47 739649.0 48 722217.0 49 681622.0 50 635629.0 51 597162.5 52 553931.0 53 510635.0 54 469219.0 55 424986.0 56 380760.0 57 332546.5 58 284297.0 59 241074.0 60 197934.0 61 156057.0 62 119393.0 63 90559.0 64 66995.0 65 48622.0 66 35759.5 67 26960.0 68 20897.0 69 16044.5 70 12241.0 71 9291.0 72 6782.0 73 4854.0 74 3459.5 75 2426.0 76 1740.0 77 1181.5 78 854.5 79 646.5 80 452.5 81 316.5 82 241.0 83 164.0 84 104.5 85 75.5 86 57.5 87 48.5 88 39.0 89 26.0 90 18.5 91 16.5 92 13.5 93 8.5 94 5.0 95 5.0 96 5.0 97 4.5 98 3.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.8831839612147825 3 0.006793105133507696 4 8.908742069532678 5 3.6702084607577126E-4 6 0.07567068391372743 7 0.026592913934963776 8 5.47311788007729E-4 9 2.7043641289793675E-4 10-11 0.30259902914615566 12-13 0.3182070735476937 14-15 6.117014101262855E-5 16-17 1.5131561197860745E-4 18-19 0.5053394128297481 20-21 2.575950781823602E-4 22-23 1.674785673329383E-4 24-25 0.18253559389309926 26-27 0.16865971418357414 28-29 1.1934977981901025E-4 30-31 1.130697593248792E-4 32-33 1.1661477794942826E-4 34-35 3.217818419221674E-4 36-37 3.3963648576299367E-4 38-39 0.0014431182768234185 40-41 0.00175666823170837 42-43 0.0011643893152309607 44-45 9.093043103977035E-4 46-47 0.0014367719691752772 48-49 0.0025010383072507428 50-51 3.2798157171669214E-4 52-53 0.001636973098415066 54-55 6.40528486129373E-4 56-57 0.011114149358334857 58-59 1.9915180199363533E-4 60-61 0.0026981892834167147 62-63 0.0014861720206161499 64-65 0.001590350314325739 66-67 0.004879637962156934 68-69 0.0020496567951256133 70-71 0.0026735955664360937 72-73 0.0035895010171962173 74-75 7.262617597245585E-4 76-77 3.5773399312443046E-4 78-79 8.072847167574625E-4 80-81 4.388601397817421E-4 82-83 0.001637209163940747 84-85 2.9479939474408713E-4 86-87 5.889257815408015E-4 88-89 1.3869201160910977E-4 90-91 2.77038558397043E-4 92-93 0.0 94-95 0.0 96-97 2.6785365119347552E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1362.0 20-21 3602.0 22-23 4905.0 24-25 6306.0 26-27 9942.0 28-29 17734.0 30-31 39758.0 32-33 49043.0 34-35 65143.0 36-37 93825.0 38-39 69978.0 40-41 111036.0 42-43 121122.0 44-45 144019.0 46-47 144023.0 48-49 135405.0 50-51 121188.0 52-53 23046.0 54-55 24643.0 56-57 26689.0 58-59 30390.0 60-61 151065.0 62-63 164422.0 64-65 181536.0 66-67 200480.0 68-69 205937.0 70-71 182398.0 72-73 152390.0 74-75 151322.0 76-77 159199.0 78-79 164528.0 80-81 165865.0 82-83 157971.0 84-85 155294.0 86-87 157407.0 88-89 164327.0 90-91 169064.0 92-93 169043.0 94-95 181552.0 96-97 267692.0 98-99 1352933.0 100-101 9632869.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.79729396364719 #Duplication Level Percentage of deduplicated Percentage of total 1 87.56203694142314 69.87213601870478 2 7.677793870582569 12.253343489663317 3 2.2844306821526557 5.468741600499316 4 1.0397906981952683 3.318899360182151 5 0.5021170775867014 2.0033792022176726 6 0.30892247907078163 1.4790706724633886 7 0.18003924089441561 1.0056650961450502 8 0.11715211290008931 0.7478737273240649 9 0.07794011511923188 0.5597469249956865 >10 0.24602253783000327 2.9190590168538484 >50 0.002725540678395219 0.14489000579494413 >100 9.340346694247062E-4 0.12298410459673326 >500 4.73355002399374E-5 0.032194512952835944 >1k 4.7333397135545304E-5 0.07201626760618549 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 0.0 0.0 2.897532995335036E-5 0.0 12-13 0.0 0.0 0.0 5.151169769484509E-5 0.0 14-15 0.0 0.0 0.0 1.1912080091932927E-4 0.0 16-17 0.0 0.0 0.0 2.1248575299123598E-4 0.0 18-19 0.0 0.0 0.0 2.865338184275758E-4 0.0 20-21 0.0 0.0 0.0 3.8311825160541033E-4 0.0 22-23 0.0 0.0 0.0 5.183364580543787E-4 0.0 24-25 0.0 0.0 0.0 7.43700135469326E-4 0.0 26-27 0.0 0.0 0.0 0.0010881846138036024 0.0 28-29 0.0 0.0 0.0 0.00374747600729998 0.0 30-31 0.0 0.0 0.0 0.013222408902045547 0.0 32-33 0.0 0.0 0.0 0.03431644910808461 0.0 34-35 0.0 0.0 0.0 0.061955694402474934 0.0 36-37 0.0 0.0 0.0 0.10404397090026929 0.0 38-39 0.0 0.0 0.0 0.18350076459456782 0.0 40-41 0.0 0.0 0.0 0.5433099729930608 0.0 42-43 0.0 0.0 0.0 0.6216785820735558 0.0 44-45 0.0 0.0 0.0 0.7249209021784491 0.0 46-47 0.0 0.0 0.0 0.841424264958659 0.0 48-49 0.0 0.0 0.0 0.9496406833722106 0.0 50-51 0.0 0.0 0.0 1.0569202327839373 0.0 52-53 0.0 0.0 0.0 1.3070385004223637 0.0 54-55 0.0 0.0 0.0 2.0270110601410014 0.0 56-57 0.0 0.0 0.0 2.8146571127062425 0.0 58-59 0.0 0.0 0.0 3.6276469205373467 0.0 60-61 0.0 0.0 0.0 4.250500613214566 0.0 62-63 0.0 0.0 0.0 4.283474538701479 0.0 64-65 0.0 0.0 0.0 4.292089870140941 0.0 66-67 0.0 0.0 0.0 4.298319566080912 0.0 68-69 0.0 0.0 0.0 4.304410824333328 0.0 70-71 0.0 0.0 0.0 4.309880722732299 0.0 72-73 0.0 0.0 0.0 4.314130437792123 0.0 74-75 0.0 0.0 0.0 4.317498015028924 0.0 76-77 0.0 0.0 0.0 4.320585497409509 0.0 78-79 0.0 0.0 0.0 4.323408982339408 0.0 80-81 0.0 0.0 0.0 4.324896382610346 0.0 82-83 0.0 0.0 0.0 4.325456572322778 0.0 84-85 0.0 0.0 0.0 4.325920177602031 0.0 86-87 0.0 0.0 0.0 4.326029639959632 0.0 88-89 0.0 0.0 0.0 4.326061834770692 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18065 0.0 42.783306 1 GTATCAA 29960 0.0 35.47489 1 ATCAACG 34090 0.0 30.225147 3 TCAACGC 35220 0.0 29.373348 4 CAACGCA 35265 0.0 27.927832 5 TATCAAC 38410 0.0 27.341333 2 AACGCAG 37135 0.0 26.768867 6 ACGCAGA 41595 0.0 23.768242 7 CGCAGAG 42255 0.0 23.39946 8 TACATGG 33565 0.0 19.802687 2 GTACATG 35115 0.0 19.782305 1 GCAGAGT 49750 0.0 19.581099 9 ACATGGG 33470 0.0 19.41311 3 AGAGTAC 43435 0.0 18.61951 10-11 GAGTACT 30860 0.0 17.99893 12-13 CGTCTTC 27555 0.0 17.905819 48-49 CATGGGG 24150 0.0 17.691294 4 CCGTCTT 31605 0.0 17.210997 46-47 TGCCGTC 31500 0.0 17.204174 44-45 TATGCCG 31450 0.0 17.184465 42-43 >>END_MODULE