##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139970_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10968284 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.769298643251762 33.0 31.0 34.0 30.0 34.0 2 31.472830481048813 33.0 31.0 34.0 29.0 34.0 3 31.798098316929067 33.0 31.0 34.0 30.0 34.0 4 33.17264970527751 37.0 35.0 37.0 28.0 37.0 5 34.52938253604666 37.0 35.0 37.0 30.0 37.0 6 35.121625588834135 37.0 35.0 37.0 32.0 37.0 7 35.24729055155756 37.0 35.0 37.0 32.0 37.0 8 35.385309497821176 37.0 35.0 37.0 32.0 37.0 9 37.131854809740524 39.0 37.0 39.0 33.0 39.0 10-11 37.01961108957427 39.0 37.0 39.0 33.0 39.0 12-13 36.91818013647349 39.0 37.0 39.0 32.5 39.0 14-15 38.24735947756276 40.0 38.0 41.0 33.0 41.0 16-17 38.23681120036644 40.0 38.0 41.0 32.5 41.0 18-19 38.180486984108 40.0 38.0 41.0 32.5 41.0 20-21 38.237116749517966 40.0 38.0 41.0 32.5 41.0 22-23 38.27027743397579 40.0 38.0 41.0 32.5 41.0 24-25 38.16041242255025 40.0 38.0 41.0 32.0 41.0 26-27 38.071216577824444 40.0 38.0 41.0 32.0 41.0 28-29 38.060953365628194 40.0 38.0 41.0 32.0 41.0 30-31 38.01353185476664 40.0 37.0 41.0 32.0 41.0 32-33 37.91410042453035 40.0 37.0 41.0 32.0 41.0 34-35 37.7975076511132 40.0 37.0 41.0 31.0 41.0 36-37 37.75083405252029 40.0 37.0 41.0 31.0 41.0 38-39 37.66766945952311 40.0 37.0 41.0 31.0 41.0 40-41 37.59176865579158 40.0 37.0 41.0 31.0 41.0 42-43 37.571341608524435 40.0 37.0 41.0 31.0 41.0 44-45 37.50713341515044 40.0 36.5 41.0 31.0 41.0 46-47 37.377480271627846 40.0 36.0 41.0 30.0 41.0 48-49 37.55702488213079 40.0 36.5 41.0 31.0 41.0 50-51 37.491177385128395 40.0 36.0 41.0 30.5 41.0 52-53 37.43424777818963 39.5 36.0 41.0 30.0 41.0 54-55 37.30810324756484 39.0 36.0 41.0 30.0 41.0 56-57 37.152553497744194 39.0 35.0 41.0 30.0 41.0 58-59 37.03551366471609 39.0 35.0 41.0 30.5 41.0 60-61 36.821584605333356 39.0 35.0 41.0 30.0 41.0 62-63 36.64476142565461 38.5 35.0 40.5 30.0 41.0 64-65 36.39157205546766 38.0 35.0 40.0 30.0 41.0 66-67 36.17024781166448 37.5 34.5 40.0 30.0 41.0 68-69 35.91106079677106 37.0 34.0 40.0 30.0 41.0 70-71 35.65800714423652 36.5 34.0 39.0 30.0 41.0 72-73 35.35657330146671 36.0 34.0 39.0 30.0 41.0 74-75 35.17981650830055 36.0 34.0 39.0 30.0 40.0 76-77 34.98854570730641 35.0 34.0 37.5 30.0 39.5 78-79 34.72951882377011 35.0 34.0 37.0 30.0 39.0 80-81 34.47822647130869 35.0 34.0 37.0 30.0 39.0 82-83 34.234354131666365 35.0 34.0 36.0 30.0 38.5 84-85 34.027944251386224 35.0 34.0 36.0 29.0 37.0 86-87 33.848109177361195 35.0 34.0 35.5 29.0 37.0 88-89 33.71804058497075 35.0 34.0 35.0 29.0 36.5 90-91 33.591459259023424 35.0 34.0 35.0 29.0 36.0 92-93 33.554034271808504 35.0 34.0 35.0 29.0 36.0 94-95 33.53514379965556 35.0 34.0 35.0 29.0 36.0 96-97 33.5497570222028 35.0 34.0 35.0 30.0 36.0 98-99 33.590742816503194 35.0 34.0 35.0 30.0 35.0 100-101 33.200944205351284 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 6.0 17 101.0 18 673.0 19 2668.0 20 7516.0 21 15637.0 22 26560.0 23 40697.0 24 60932.0 25 89330.0 26 126876.0 27 171971.0 28 188411.0 29 171754.0 30 204183.0 31 251859.0 32 315075.0 33 409416.0 34 558244.0 35 786547.0 36 1208918.0 37 2080646.0 38 2722165.0 39 1454438.0 40 73659.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.73740103739108 20.592902226091155 14.523976585580753 25.145720150937013 2 14.204367744020303 20.66241202402552 41.870893960416 23.26232627153818 3 17.401599449727 26.08137369847881 31.052503786819543 25.46452306497465 4 12.00550147840096 18.533746832528667 38.617372632928785 30.84337905614159 5 13.137523520134732 37.480824218093986 35.76028727249586 13.62136498927542 6 29.43186682885331 38.377432845277085 18.70654509237595 13.484155233493658 7 25.75747171498558 32.88823996157504 23.09911306883618 18.255175254603202 8 23.947927427859604 37.000779797580854 21.31928111287955 17.73201166167999 9 24.998543525077764 16.92146696336512 21.130456116889246 36.949533394667874 10-11 23.808828663122604 26.74379117934434 29.06809805189291 20.379282105640147 12-13 24.79168396986476 24.10061956914797 28.938724029375724 22.168972431611554 14-15 21.954179490012834 25.6407296825864 26.44188111240089 25.96320971499988 16-17 21.85601142495268 28.822604980747652 27.033184713764875 22.288198880534793 18-19 21.705961380621986 27.798691059073345 28.68876319967162 21.806584360633053 20-21 22.48234470795356 27.09179037525728 28.510282314606723 21.915582602182436 22-23 22.223121692612537 27.264149020159778 28.331762097916023 22.180967189311666 24-25 22.159312734549268 27.437160170875057 28.448349445781968 21.955177648793704 26-27 22.10857608629724 27.71701091353634 28.312616328468426 21.861796671698 28-29 21.847697589077132 27.484020100631046 28.46150915877001 22.206773151521812 30-31 22.5767224404835 27.328607730862466 28.340169290260974 21.754500538393064 32-33 22.367642040865494 27.461183573493003 28.439764933284025 21.73140945235748 34-35 22.24256019171868 27.58358579820559 28.48851944736156 21.685334562714168 36-37 22.287739545404712 27.27237055459702 28.336412055603965 22.103477844394305 38-39 21.90098827474887 27.204728807888067 28.70990290915909 22.18438000820397 40-41 22.163113607607773 27.048058121492808 28.689136445056796 22.09969182584263 42-43 22.306548879440314 27.052411363135874 28.587343802054217 22.053695955369594 44-45 22.088109993126974 27.469313956944998 28.267624382951755 22.174951666976273 46-47 22.428634012903544 27.05902931755646 27.78498293057514 22.727353738964855 48-49 22.299747635491286 27.12250584386674 28.050550668430795 22.527195852211182 50-51 22.045343105565575 27.45969612859378 28.02437723730824 22.470583528532405 52-53 22.121400799568466 27.58184126410141 28.064916133648076 22.231841802682055 54-55 22.153876129254876 27.464038853011196 27.84398211635081 22.538102901383116 56-57 22.43335091683056 27.652648142214726 27.523820886443374 22.390180054511344 58-59 22.051491714069385 28.029938260346132 27.955869672834098 21.962700352750385 60-61 22.333154895701355 28.164677922458676 27.392538759090858 22.109628422749118 62-63 21.999944629031557 28.468332609688495 27.336843398194844 22.194879363085104 64-65 21.977511317681994 28.43603905995018 27.32718203613384 22.25926758623399 66-67 22.1212706285117 28.31313020175978 27.203631273982182 22.36196789574634 68-69 22.238380064877397 28.063556365353936 27.41352249518218 22.284541074586485 70-71 22.29287220642559 27.538865916908183 27.5020107277954 22.666251148870828 72-73 22.296315122389164 27.485680555922297 27.626041914217563 22.591962407470977 74-75 22.190852591091424 27.639717475328535 27.512419087049928 22.65701084653011 76-77 22.31995023160627 27.609979303101877 27.417172334311907 22.652898130979942 78-79 22.412111820472404 27.587683293403302 27.394134201322018 22.606070684802276 80-81 22.353479707877685 27.56937766738584 27.40200392240089 22.67513870233558 82-83 22.427689347190626 27.600986587454134 27.485122281253705 22.48620178410153 84-85 22.6493173006325 27.573466111109507 27.341855415404424 22.435361172853565 86-87 22.345400025503196 27.65336903302616 27.423188953459537 22.57804198801111 88-89 22.468745742993516 27.543445446077996 27.41377525087555 22.57403356005294 90-91 22.538026518370017 27.562319641384747 27.402164410705105 22.49748942954013 92-93 22.5394240917754 27.60974562640804 27.376127136613622 22.474703145202948 94-95 22.371438494025554 27.722342664765243 27.461410808537995 22.444808032671208 96-97 22.286303643543658 27.684315992470875 27.622090825903555 22.407289538081912 98-99 22.6031329675029 28.22052438060877 27.623073928314728 21.553268723573606 100-101 23.291126299335463 30.81216112779874 24.64373278257864 21.25297979028716 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1986.0 1 1762.0 2 2336.0 3 3259.0 4 4238.5 5 6789.0 6 8930.5 7 10345.5 8 10925.5 9 10150.0 10 8722.0 11 7477.5 12 8445.5 13 12148.5 14 20981.0 15 33272.5 16 43298.5 17 49412.5 18 51385.5 19 49547.0 20 45932.5 21 42894.0 22 42516.5 23 47627.5 24 57962.0 25 73321.0 26 93842.0 27 116866.0 28 139820.5 29 162216.5 30 182057.0 31 201652.5 32 224935.0 33 248547.5 34 274713.5 35 302689.5 36 333007.0 37 359190.5 38 373495.0 39 384705.5 40 403459.5 41 421697.5 42 432714.0 43 442321.5 44 454502.5 45 471738.0 46 491809.0 47 503202.5 48 501946.5 49 491130.5 50 471315.5 51 451434.0 52 428299.5 53 403355.0 54 379135.0 55 349029.5 56 317546.0 57 287046.0 58 256551.0 59 224085.5 60 186665.5 61 149960.5 62 117787.0 63 89774.5 64 66966.0 65 48954.5 66 36190.5 67 27556.5 68 20096.5 69 14676.5 70 10890.5 71 7972.5 72 5764.5 73 4047.0 74 2864.5 75 2070.0 76 1472.0 77 973.5 78 656.5 79 463.0 80 335.5 81 254.5 82 189.5 83 126.5 84 88.5 85 70.0 86 57.0 87 42.0 88 27.0 89 19.5 90 12.5 91 8.5 92 7.0 93 3.0 94 1.0 95 1.0 96 1.0 97 1.5 98 1.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.5902943432172252 3 0.005807654141705302 4 7.970891344534843 5 2.0057832200552064E-4 6 0.07359400978311649 7 0.022747405154717 8 4.832114121042088E-4 9 1.9146112555072425E-4 10-11 0.25970334101487524 12-13 0.2716514269688859 14-15 7.293757163837114E-5 16-17 1.0028916100276032E-4 18-19 0.40423825641276245 20-21 1.459009293478853E-4 22-23 1.368206609049054E-4 24-25 0.1542589518302459 26-27 0.1357359281868981 28-29 7.764876258246812E-5 30-31 8.68928374417029E-5 32-33 1.5585036128405662E-4 34-35 2.988239759440263E-4 36-37 2.631313872259037E-4 38-39 0.001490511224454971 40-41 0.0017336481812885716 42-43 0.0011763526761788112 44-45 8.825488351992361E-4 46-47 0.0013462568239291067 48-49 0.002529287871987276 50-51 2.2443167070448518E-4 52-53 0.0014902968395870057 54-55 4.809008730928872E-4 56-57 0.007418034718003135 58-59 1.7178224074775798E-4 60-61 0.002677259212083636 62-63 0.0014100803389399264 64-65 0.0013685923108722959 66-67 0.005056698496362139 68-69 0.0021123174969745343 70-71 0.0028211362134253144 72-73 0.003861644856074516 74-75 7.174351991950488E-4 76-77 4.105729393512903E-4 78-79 8.479937123258162E-4 80-81 4.262960118855937E-4 82-83 0.0016271009941587074 84-85 2.301994530697097E-4 86-87 5.318116906192063E-4 88-89 1.3313765325883756E-4 90-91 2.3917438474229327E-4 92-93 0.0 94-95 0.0 96-97 5.77406099333096E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1217.0 20-21 2942.0 22-23 3821.0 24-25 4901.0 26-27 6439.0 28-29 10372.0 30-31 23842.0 32-33 29666.0 34-35 40314.0 36-37 58858.0 38-39 68612.0 40-41 71650.0 42-43 83658.0 44-45 100004.0 46-47 99357.0 48-49 93083.0 50-51 84520.0 52-53 78818.0 54-55 86687.0 56-57 97037.0 58-59 108587.0 60-61 107628.0 62-63 106098.0 64-65 116259.0 66-67 125134.0 68-69 129665.0 70-71 114855.0 72-73 99440.0 74-75 99187.0 76-77 103396.0 78-79 106235.0 80-81 106811.0 82-83 102880.0 84-85 102644.0 86-87 104857.0 88-89 108184.0 90-91 112072.0 92-93 113434.0 94-95 124117.0 96-97 188805.0 98-99 884430.0 100-101 6757768.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.99193693004793 #Duplication Level Percentage of deduplicated Percentage of total 1 89.35508374947626 75.05106558665162 2 7.195303262804628 12.086949156841088 3 1.8982353037596749 4.78309379735319 4 0.712234794742332 2.392879198375343 5 0.3329203616016109 1.398131300718563 6 0.18079871858311813 0.9111380740960043 7 0.10067381345859501 0.5919052013365204 8 0.06274005944563076 0.4215727292755901 9 0.03929790574053064 0.2970636498397456 >10 0.11681927902136345 1.4632529990560188 >50 0.003763240046778892 0.21854883007883874 >100 0.002013787117424175 0.29846082952952513 >500 9.643772241712032E-5 0.057638840357103774 >1k 1.9286479692895853E-5 0.02829980649086722 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.8234392909592786E-5 0.0 2.735158936438918E-5 0.0 5 0.0 1.8234392909592786E-5 0.0 5.470317872877836E-5 0.0 6 0.0 1.8234392909592786E-5 0.0 5.470317872877836E-5 0.0 7 0.0 1.8234392909592786E-5 0.0 6.382037518357476E-5 1.8234392909592786E-5 8 0.0 2.735158936438918E-5 0.0 7.293757163837114E-5 4.5585982273981966E-5 9 0.0 6.382037518357476E-5 0.0 2.55281500734299E-4 4.5585982273981966E-5 10-11 0.0 6.382037518357476E-5 0.0 2.643986971890954E-4 4.5585982273981966E-5 12-13 0.0 6.382037518357476E-5 0.0 2.735158936438918E-4 5.014458050138016E-5 14-15 0.0 8.205476809316754E-5 0.0 2.8719168832608635E-4 6.382037518357476E-5 16-17 0.0 9.117196454796393E-5 0.0 3.0086748300828096E-4 6.382037518357476E-5 18-19 0.0 9.573056277536213E-5 0.0 3.1454327769047557E-4 8.661336632056574E-5 20-21 0.0 1.0028916100276032E-4 0.0 3.373362688274665E-4 1.1852355391235311E-4 22-23 0.0 1.0028916100276032E-4 0.0 3.692464564192539E-4 1.1852355391235311E-4 24-25 0.0 1.1396495568495491E-4 0.0 4.1939103692063405E-4 1.1852355391235311E-4 26-27 0.0 1.1852355391235311E-4 0.0 5.151215996959962E-4 1.1852355391235311E-4 28-29 0.0 1.1852355391235311E-4 0.0 0.0014861030221318121 1.367579468219459E-4 30-31 0.0 1.367579468219459E-4 0.0 0.00538370450655727 1.4587514327674229E-4 32-33 0.0 1.4587514327674229E-4 0.0 0.01430943983580294 1.5043374150414048E-4 34-35 0.0 1.641095361863351E-4 0.0 0.026622213648005467 1.6410953618633506E-4 36-37 0.0 1.7322673264113148E-4 0.0 0.044104437850077546 1.6410953618633506E-4 38-39 0.0 1.8234392909592786E-4 0.0 0.0722993678865354 1.6866813441373326E-4 40-41 0.0 2.0057832200552064E-4 0.0 0.12083020461541659 1.8234392909592786E-4 42-43 0.0 2.0057832200552064E-4 0.0 0.14515032615858597 1.9146112555072425E-4 44-45 0.0 2.1425411668771525E-4 0.0 0.1771881545007405 2.0969551846031703E-4 46-47 0.0 2.2792991136990983E-4 0.0 0.21056621072175008 2.0969551846031703E-4 48-49 0.0 2.3704710782470622E-4 0.0 0.2372841549325309 2.0969551846031703E-4 50-51 0.0 2.507229025069008E-4 0.0 0.26144472553774134 2.3704710782470622E-4 52-53 0.0 2.55281500734299E-4 0.0 0.29632256057556494 2.55281500734299E-4 54-55 0.0 2.5984009896169724E-4 0.0 0.36962482007212794 2.55281500734299E-4 56-57 0.0 2.643986971890954E-4 0.0 0.44586281682713536 2.826330900986882E-4 58-59 0.0 2.643986971890954E-4 0.0 0.4910658768500159 3.0998467946307735E-4 60-61 4.5585982273981964E-6 2.643986971890954E-4 0.0 0.5115020727034421 3.1910187591787373E-4 62-63 9.117196454796393E-6 2.643986971890954E-4 0.0 0.5240564522216966 3.418948670548648E-4 64-65 9.117196454796393E-6 2.9175028655348457E-4 0.0 0.5336431842939151 3.4645346528226295E-4 66-67 9.117196454796393E-6 2.9175028655348457E-4 0.0 0.5394098110515738 3.510120635096611E-4 68-69 9.117196454796393E-6 2.9175028655348457E-4 0.0 0.5454727466940135 3.829222511014485E-4 70-71 9.117196454796393E-6 2.9175028655348457E-4 0.0 0.5512940766304009 4.148324386932359E-4 72-73 9.117196454796393E-6 2.9175028655348457E-4 0.0 0.5557979716790703 4.239496351480322E-4 74-75 9.117196454796393E-6 3.0086748300828096E-4 0.0 0.5593172095106217 4.3762542983022683E-4 76-77 9.117196454796393E-6 3.0998467946307735E-4 0.0 0.5627954199581265 4.4674262628502327E-4 78-79 9.117196454796393E-6 3.0998467946307735E-4 0.0 0.5658177705828915 4.4674262628502327E-4 80-81 9.117196454796393E-6 3.0998467946307735E-4 0.0 0.5670349163096069 4.6953561742201427E-4 82-83 9.117196454796393E-6 3.0998467946307735E-4 0.0 0.5675819480968947 4.923286085590053E-4 84-85 9.117196454796393E-6 3.1910187591787373E-4 0.0 0.5680058977320427 4.923286085590053E-4 86-87 9.117196454796393E-6 3.1910187591787373E-4 0.0 0.5681563314735468 4.923286085590053E-4 88-89 9.117196454796393E-6 3.282190723726701E-4 0.0 0.5682566206345496 5.151215996959962E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11165 0.0 51.440075 1 GTATCAA 19785 0.0 39.603302 1 CTTATAC 16360 0.0 32.435482 1 ATCAACG 24020 0.0 31.968788 3 TCAACGC 24725 0.0 31.110674 4 TATCAAC 26210 0.0 29.71969 2 CAACGCA 25375 0.0 28.815193 5 AACGCAG 26530 0.0 27.726242 6 TATACAC 21335 0.0 26.951084 3 TTATACA 21985 0.0 25.098782 2 ACGCAGA 30155 0.0 24.303421 7 CGCAGAG 31190 0.0 23.545286 8 ACATCTC 24510 0.0 20.42573 8 GCAGAGT 36420 0.0 20.059103 9 GTGGTAT 6265 0.0 19.450138 1 TACATGG 25185 0.0 19.26231 2 TACACAT 27745 0.0 19.03583 5 ACACATC 26570 0.0 18.89399 6 GTACATG 26420 0.0 18.884035 1 ATACACA 32200 0.0 18.794983 4 >>END_MODULE