##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139968_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8733369 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.78658270365079 33.0 31.0 34.0 30.0 34.0 2 31.470374834728727 33.0 31.0 34.0 29.0 34.0 3 31.800810317301377 33.0 31.0 34.0 30.0 34.0 4 33.00105594988601 37.0 35.0 37.0 28.0 37.0 5 34.45181292580217 37.0 35.0 37.0 28.0 37.0 6 35.1119454588487 37.0 35.0 37.0 32.0 37.0 7 35.25784253476522 37.0 35.0 37.0 32.0 37.0 8 35.41553231061232 37.0 35.0 37.0 32.0 37.0 9 37.15578810422416 39.0 37.0 39.0 33.0 39.0 10-11 37.04536674220452 39.0 37.0 39.0 33.0 39.0 12-13 36.94346986827191 39.0 37.0 39.0 32.5 39.0 14-15 38.28445294135631 40.0 38.0 41.0 33.0 41.0 16-17 38.28492853101707 40.0 38.0 41.0 33.0 41.0 18-19 38.227965920139184 40.0 38.0 41.0 33.0 41.0 20-21 38.285987955582364 40.0 38.0 41.0 32.5 41.0 22-23 38.32368348533511 40.0 38.0 41.0 33.0 41.0 24-25 38.209205445119835 40.0 38.0 41.0 32.0 41.0 26-27 38.12637976941392 40.0 38.0 41.0 32.0 41.0 28-29 38.13566107056478 40.0 38.0 41.0 32.0 41.0 30-31 38.086343020110675 40.0 37.5 41.0 32.0 41.0 32-33 37.98658066702788 40.0 37.0 41.0 32.0 41.0 34-35 37.87464091893689 40.0 37.0 41.0 31.5 41.0 36-37 37.83161814526305 40.0 37.0 41.0 31.0 41.0 38-39 37.758074718541565 40.0 37.0 41.0 31.0 41.0 40-41 37.69072951064158 40.0 37.0 41.0 31.0 41.0 42-43 37.67965891988028 40.0 37.0 41.0 31.0 41.0 44-45 37.6259929650446 40.0 37.0 41.0 31.0 41.0 46-47 37.502916248495154 40.0 36.5 41.0 30.5 41.0 48-49 37.687732182383016 40.0 37.0 41.0 31.0 41.0 50-51 37.65463332162814 40.0 37.0 41.0 31.0 41.0 52-53 37.606892324537185 40.0 36.5 41.0 31.0 41.0 54-55 37.48769262148482 40.0 36.0 41.0 31.0 41.0 56-57 37.36640879787108 39.0 36.0 41.0 30.5 41.0 58-59 37.270119456657305 39.0 35.5 41.0 31.0 41.0 60-61 37.06004024504047 39.0 35.0 41.0 31.0 41.0 62-63 36.8932595519247 39.0 35.0 41.0 31.0 41.0 64-65 36.65144380622269 38.5 35.0 40.5 30.0 41.0 66-67 36.446091176968736 38.0 35.0 40.0 30.0 41.0 68-69 36.20648619855723 37.5 34.5 40.0 30.0 41.0 70-71 35.97485349659472 37.0 34.0 39.5 30.0 41.0 72-73 35.675880373725164 36.5 34.0 39.0 30.0 41.0 74-75 35.494933599518205 36.0 34.0 39.0 30.0 41.0 76-77 35.28791489634894 36.0 34.0 39.0 30.0 40.0 78-79 35.0162233240491 35.0 34.0 37.5 30.0 39.0 80-81 34.74219224257685 35.0 34.0 37.0 30.0 39.0 82-83 34.47201258595911 35.0 34.0 36.5 30.0 39.0 84-85 34.23847805182032 35.0 34.0 36.0 30.0 37.5 86-87 34.031257138538564 35.0 34.0 36.0 30.0 37.0 88-89 33.875655730232964 35.0 34.0 35.5 30.0 37.0 90-91 33.72441733240815 35.0 34.0 35.0 29.0 36.0 92-93 33.66729772954996 35.0 34.0 35.0 29.5 36.0 94-95 33.63306942152704 35.0 34.0 35.0 30.0 36.0 96-97 33.631115331777735 35.0 34.0 35.0 30.0 36.0 98-99 33.65775825773302 35.0 34.0 35.0 30.0 36.0 100-101 33.26397687029792 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 0.0 15 1.0 16 4.0 17 84.0 18 504.0 19 1897.0 20 5482.0 21 11716.0 22 20133.0 23 30586.0 24 45853.0 25 66902.0 26 96636.0 27 132357.0 28 147803.0 29 128370.0 30 152394.0 31 189269.0 32 237927.0 33 313983.0 34 430093.0 35 605451.0 36 922188.0 37 1587444.0 38 2239254.0 39 1300112.0 40 66924.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.18665294000517 21.461156628100795 14.854588189277242 24.497602242616797 2 13.706714284583041 21.223968947429466 42.705401174113604 22.36391559387389 3 16.963951384306874 27.134803450615824 31.402314808347086 24.498930356730213 4 11.464174478229658 19.200795541243224 39.91738109385168 29.417648886675433 5 12.452649877836055 38.18857056619536 36.46595474403511 12.89282481193348 6 28.1209579466025 39.568121920476685 19.357144494098772 12.953775638822046 7 24.848949847249052 33.3820780313739 24.085481432920034 17.683490688457013 8 23.155718441057957 37.71894418774596 21.9252374780625 17.200099893133583 9 24.617924305775976 17.271360307639178 21.89752429423401 36.21319109235084 10-11 23.127910140214887 27.408838450365458 29.855412887351086 19.60783852206857 12-13 24.25741147376039 24.8045375446613 29.664739085210673 21.273311896367638 14-15 21.307131130764354 26.326772763640577 27.20386334587623 25.16223275971884 16-17 20.969013293626578 29.434227933860036 27.899531886818334 21.697226885695056 18-19 20.853863307488517 28.458060317500113 29.74140196344849 20.946674411562878 20-21 21.68799154238886 27.65621205594378 29.556162657273955 21.099633744393405 22-23 21.303647282679727 27.924846294944405 29.389908370904532 21.381598051471336 24-25 21.17381548654865 28.058274195583806 29.62116470228852 21.146745615579025 26-27 21.383455383905396 28.15964995459696 29.443873000056254 21.013021661441396 28-29 21.050957162012356 28.02200282258941 29.703609758861717 21.22343025653652 30-31 21.579828562697063 27.96829333824411 29.430943160122247 21.020934938936577 32-33 21.371400243986294 27.839304444549057 29.466570321354506 21.322724990110142 34-35 21.10060535152728 28.192420154867676 29.79028085522121 20.91669363838384 36-37 21.45808452990268 27.951592603663933 29.39318896606918 21.19713390036421 38-39 21.10729293107055 27.934429993374355 29.626399791615555 21.331877283939537 40-41 21.37602557677255 27.803800429470538 29.590042637339536 21.230131356417374 42-43 21.543984131477988 27.769517762864925 29.35144959274625 21.335048512910834 44-45 21.305651420133113 28.25310941083659 29.08726973810995 21.353969430920348 46-47 21.64631224259901 27.851275435810173 28.636873597044072 21.86553872454674 48-49 21.56988628114877 27.8995391352362 28.718222533231526 21.812352050383506 50-51 21.336282971081637 28.08045698916824 28.77661733689849 21.806642702851637 52-53 21.42526516004427 28.123165099288883 28.924265182592023 21.52730455807483 54-55 21.50738520577064 28.041216039208717 28.638368140527128 21.813030614493517 56-57 21.772702079337655 28.37024205382523 28.22625150512577 21.63080436171135 58-59 21.40017909373697 28.652771296688893 28.723134987907745 21.223914621666385 60-61 21.675755300934565 28.95824532662772 28.0704138208229 21.29558555161482 62-63 21.41014383139154 29.167159774704032 28.001869723326113 21.420826670578315 64-65 21.343287906561777 29.087956517340004 28.058255849781183 21.51049972631704 66-67 21.46547412267659 28.958028223958816 28.045273129245867 21.531224524118727 68-69 21.49878822481522 28.68839288102441 28.21683525870611 21.595983635454264 70-71 21.590452573763557 28.256470396946188 28.338834579753513 21.814242449536742 72-73 21.668890810451437 28.24913752900945 28.39435820688452 21.68761345365459 74-75 21.58237349779806 28.349439530430665 28.345310981717535 21.722875990053737 76-77 21.517157246678728 28.37717404428718 28.3296827260199 21.77598598301419 78-79 21.563860968362345 28.330262353100405 28.30612132183384 21.79975535670341 80-81 21.491407926248456 28.337219621084436 28.340884306526053 21.830488146141057 82-83 21.632605532562764 28.278558734643106 28.455751360069304 21.633084372724827 84-85 21.820577839875906 28.275735654807388 28.243162754506514 21.660523750810196 86-87 21.501330070626576 28.3837301820887 28.36666495692756 21.74827479035716 88-89 21.708363666299416 28.23684921328579 28.30612555158928 21.74866156882551 90-91 21.71178352427183 28.282724870582186 28.35931070467486 21.64618090047112 92-93 21.750783987355412 28.29200137560432 28.32002665522333 21.637187981816933 94-95 21.49192506290929 28.411161946032543 28.35865390405454 21.73825908700363 96-97 21.564322062816196 28.42274193828628 28.395664008671282 21.61727199022624 98-99 21.784254704905802 28.96747806806606 28.469214534249865 20.779052692778276 100-101 22.41379750766425 31.522547905884018 25.673151065148936 20.390503521302797 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1467.0 1 1309.5 2 1949.0 3 2828.0 4 3864.5 5 6623.5 6 8847.5 7 10024.0 8 10370.0 9 9473.5 10 7987.5 11 6734.5 12 7526.0 13 11107.5 14 19930.5 15 32221.0 16 42236.5 17 48004.0 18 49615.0 19 47604.0 20 43688.0 21 40202.0 22 39530.5 23 44231.0 24 54076.5 25 68424.5 26 86859.5 27 106708.0 28 126832.0 29 148204.5 30 169293.0 31 190838.5 32 214570.5 33 237711.5 34 262096.0 35 286994.5 36 310514.0 37 332295.5 38 344653.0 39 349508.0 40 356803.0 41 362142.0 42 365076.0 43 372200.0 44 388404.5 45 407430.0 46 404026.0 47 389150.5 48 372161.5 49 350626.5 50 333171.0 51 314289.5 52 293437.0 53 272901.5 54 251176.5 55 225974.0 56 200696.0 57 174456.5 58 149546.5 59 127858.5 60 104916.0 61 82423.0 62 63140.5 63 47995.5 64 35757.0 65 25991.5 66 19043.5 67 14591.0 68 11521.5 69 8707.5 70 6555.0 71 4866.5 72 3533.5 73 2499.0 74 1702.0 75 1171.5 76 804.0 77 526.5 78 354.0 79 261.0 80 200.5 81 162.5 82 126.5 83 81.0 84 48.0 85 33.5 86 26.0 87 21.5 88 13.5 89 6.5 90 3.5 91 3.0 92 3.0 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.6731801896839582 3 0.0063091345390306995 4 8.540243747859504 5 2.6335770308113626E-4 6 0.0729271830836416 7 0.02476707442454338 8 4.1221205699656113E-4 9 2.40457033247994E-4 10-11 0.27302751091818056 12-13 0.28679653865535737 14-15 7.442717695771242E-5 16-17 1.2595368408228257E-4 18-19 0.43225014310056065 20-21 2.5767177631707785E-4 22-23 1.7182358895032282E-4 24-25 0.1638490020124471 26-27 0.14181083279774298 28-29 1.0897130968946504E-4 30-31 5.742251133563441E-5 32-33 1.0358875173482384E-4 34-35 3.63597433002123E-4 36-37 2.259759204694551E-4 38-39 0.0014568051447365047 40-41 0.0017421127604480573 42-43 0.0011813476778868904 44-45 0.0010007822185304478 46-47 0.0013777800774204107 48-49 0.002545109020261194 50-51 3.0028217331980634E-4 52-53 0.0014269744879200122 54-55 5.481058148172186E-4 56-57 0.007918193249287787 58-59 1.8396531657481193E-4 60-61 0.0027354202262096436 62-63 0.0014881989382929956 64-65 0.00151080915275654 66-67 0.00475863589830206 68-69 0.0019909278045335235 70-71 0.0023974486256642734 72-73 0.003495778521208765 74-75 6.106051568936073E-4 76-77 3.225444550401077E-4 78-79 7.302520007486855E-4 80-81 4.446369610928316E-4 82-83 0.0015380689848606853 84-85 2.0546053943224353E-4 86-87 3.7114314538322797E-4 88-89 1.1266875244068685E-4 90-91 3.2706128664541077E-4 92-93 0.0 94-95 0.0 96-97 4.760254917997865E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 864.0 20-21 1987.0 22-23 2759.0 24-25 3485.0 26-27 4720.0 28-29 7952.0 30-31 18135.0 32-33 23186.0 34-35 30660.0 36-37 45281.0 38-39 56109.0 40-41 57593.0 42-43 67409.0 44-45 81798.0 46-47 80619.0 48-49 75032.0 50-51 65588.0 52-53 65345.0 54-55 70003.0 56-57 74184.0 58-59 75676.0 60-61 77939.0 62-63 80662.0 64-65 87603.0 66-67 95200.0 68-69 98407.0 70-71 86423.0 72-73 74406.0 74-75 74506.0 76-77 77202.0 78-79 80469.0 80-81 80981.0 82-83 77955.0 84-85 77727.0 86-87 78395.0 88-89 82350.0 90-91 84955.0 92-93 85648.0 94-95 94009.0 96-97 141937.0 98-99 693995.0 100-101 5494215.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.65340098205652 #Duplication Level Percentage of deduplicated Percentage of total 1 89.05307423545837 74.49592527703646 2 7.218478885520703 12.077006173819438 3 1.991963468330413 4.999035562735562 4 0.8016009085518558 2.682265689226769 5 0.381148835566861 1.5942198187759278 6 0.19509506530376064 0.9792219436485594 7 0.11682509016394341 0.6840971278574486 8 0.07294984907793564 0.48820023811976465 9 0.045855065604996616 0.34523389711019614 >10 0.12140372679222086 1.4546051527734856 >50 0.0010711768672829667 0.05556535913160206 >100 4.4445524353351666E-4 0.07447147633602139 >500 4.4619163311299435E-5 0.02243256338672769 >1k 4.461835480001158E-5 0.047719720041918545 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 1.1450334916571143E-5 0.0 2.2900669833142286E-5 0.0 5 0.0 1.1450334916571143E-5 0.0 2.2900669833142286E-5 0.0 6 0.0 1.1450334916571143E-5 0.0 2.2900669833142286E-5 0.0 7 0.0 1.1450334916571143E-5 0.0 2.2900669833142286E-5 0.0 8 0.0 1.1450334916571143E-5 0.0 2.2900669833142286E-5 0.0 9 0.0 4.580133966628457E-5 0.0 2.2900669833142286E-5 0.0 10-11 0.0 4.580133966628457E-5 0.0 3.435100474971343E-5 0.0 12-13 0.0 4.580133966628457E-5 0.0 5.152650712457014E-5 0.0 14-15 0.0 6.870200949942686E-5 0.0 5.725167458285571E-5 0.0 16-17 0.0 6.870200949942686E-5 0.0 5.725167458285571E-5 0.0 18-19 5.725167458285571E-6 6.870200949942686E-5 0.0 6.297684204114128E-5 0.0 20-21 1.1450334916571143E-5 6.870200949942686E-5 0.0 8.0152344415998E-5 0.0 22-23 1.1450334916571143E-5 9.160267933256914E-5 0.0 9.732784679085472E-5 0.0 24-25 1.1450334916571143E-5 9.160267933256914E-5 0.0 1.1450334916571142E-4 0.0 26-27 1.1450334916571143E-5 9.160267933256914E-5 0.0 1.774801912068527E-4 5.725167458285571E-6 28-29 1.1450334916571143E-5 9.160267933256914E-5 0.0 6.984704299108396E-4 1.1450334916571143E-5 30-31 1.1450334916571143E-5 1.3740401899885372E-4 0.0 0.00275380554743536 1.1450334916571143E-5 32-33 1.1450334916571143E-5 1.3740401899885372E-4 0.0 0.00787210525514266 1.1450334916571143E-5 34-35 1.1450334916571143E-5 1.6602985629028157E-4 0.0 0.015062915582749338 1.1450334916571143E-5 36-37 1.1450334916571143E-5 1.946556935817094E-4 0.0 0.024864402271334234 1.1450334916571143E-5 38-39 1.1450334916571143E-5 2.1183119595656613E-4 0.0 0.03853037699426189 1.1450334916571143E-5 40-41 1.1450334916571143E-5 2.4045703324799398E-4 0.0 0.051715437650693565 1.1450334916571143E-5 42-43 1.1450334916571143E-5 2.4618220070627957E-4 0.0 0.06282226251976757 1.1450334916571143E-5 44-45 1.1450334916571143E-5 2.576325356228507E-4 0.0 0.07511992222016498 1.1450334916571143E-5 46-47 1.1450334916571143E-5 2.6335770308113626E-4 0.0 0.08709697254289839 1.1450334916571143E-5 48-49 1.7175502374856715E-5 2.6335770308113626E-4 0.0 0.09722479377660556 1.1450334916571143E-5 50-51 2.2900669833142286E-5 2.7480803799770744E-4 0.0 0.10611025367186477 1.1450334916571143E-5 52-53 2.2900669833142286E-5 2.7480803799770744E-4 0.0 0.11322091165505546 1.1450334916571143E-5 54-55 2.2900669833142286E-5 2.80533205455993E-4 0.0 0.12042889748503699 1.1450334916571143E-5 56-57 2.2900669833142286E-5 2.8625837291427857E-4 0.0 0.12707009173664824 1.1450334916571143E-5 58-59 2.2900669833142286E-5 2.8625837291427857E-4 0.0 0.13350517995976124 1.1450334916571143E-5 60-61 2.2900669833142286E-5 2.9198354037256413E-4 0.0 0.1396998111496262 1.1450334916571143E-5 62-63 2.2900669833142286E-5 2.977087078308497E-4 0.0 0.14594024367915748 1.1450334916571143E-5 64-65 2.2900669833142286E-5 3.3205971258056313E-4 0.0 0.15182571582627508 1.1450334916571143E-5 66-67 2.2900669833142286E-5 3.3205971258056313E-4 0.0 0.15715584672993893 1.1450334916571143E-5 68-69 2.2900669833142286E-5 3.377848800388487E-4 0.0 0.16259475581531022 1.1450334916571143E-5 70-71 2.2900669833142286E-5 3.492352149554198E-4 0.0 0.16805656557051465 1.1450334916571143E-5 72-73 2.2900669833142286E-5 3.549603824137054E-4 0.0 0.17226456365235454 1.1450334916571143E-5 74-75 2.2900669833142286E-5 3.6641071733027657E-4 0.0 0.17558516077816017 1.1450334916571143E-5 76-77 2.2900669833142286E-5 4.0648688953827557E-4 0.0 0.17860232402867668 1.1450334916571143E-5 78-79 2.2900669833142286E-5 4.2366239191313226E-4 0.0 0.18127025206423775 1.1450334916571143E-5 80-81 2.2900669833142286E-5 4.2366239191313226E-4 0.0 0.18258131541218514 1.1450334916571143E-5 82-83 2.2900669833142286E-5 4.2366239191313226E-4 0.0 0.1830736798135977 1.1450334916571143E-5 84-85 2.2900669833142286E-5 4.293875593714178E-4 0.0 0.18341718986109484 1.1450334916571143E-5 86-87 2.2900669833142286E-5 4.4656306174627457E-4 0.0 0.18352024287534396 1.1450334916571143E-5 88-89 2.2900669833142286E-5 4.923644014125591E-4 0.0 0.1835488687126354 1.1450334916571143E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10080 0.0 52.02553 1 CTTATAC 9665 0.0 43.83969 1 GTATCAA 18355 0.0 40.454254 1 ATCAACG 21865 0.0 33.19514 3 TATACAC 14505 0.0 32.60485 3 TCAACGC 22450 0.0 32.265736 4 TATCAAC 23710 0.0 31.063042 2 CAACGCA 22890 0.0 30.292496 5 TTATACA 14490 0.0 30.266489 2 AACGCAG 24005 0.0 29.142174 6 ACGCAGA 26950 0.0 25.827631 7 CGCAGAG 27330 0.0 25.477646 8 ACATCTC 16905 0.0 23.381765 8 ACACATC 17560 0.0 22.604929 6 GCAGAGT 31880 0.0 21.627407 9 TACACAT 20295 0.0 21.55526 5 CATCTCC 18980 0.0 20.78061 9 CACATCT 19560 0.0 20.387592 7 ATACACA 24985 0.0 20.07425 4 TATGCCG 11490 0.0 19.781868 42-43 >>END_MODULE