##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139966_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7895941 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.79958664838048 33.0 31.0 34.0 30.0 34.0 2 31.472673238059908 33.0 31.0 34.0 29.0 34.0 3 31.802065896895634 33.0 31.0 34.0 30.0 34.0 4 33.03954538160809 37.0 35.0 37.0 28.0 37.0 5 34.47514552097084 37.0 35.0 37.0 28.0 37.0 6 35.155044344936215 37.0 35.0 37.0 32.0 37.0 7 35.269158292849454 37.0 35.0 37.0 32.0 37.0 8 35.42229621523261 37.0 35.0 37.0 32.0 37.0 9 37.154224936584505 39.0 37.0 39.0 33.0 39.0 10-11 37.04218490234413 39.0 37.0 39.0 33.0 39.0 12-13 36.942089042965236 39.0 37.0 39.0 32.5 39.0 14-15 38.28073677348906 40.0 38.0 41.0 33.0 41.0 16-17 38.27744400572395 40.0 38.0 41.0 33.0 41.0 18-19 38.221687700047404 40.0 38.0 41.0 33.0 41.0 20-21 38.283521499700825 40.0 38.0 41.0 33.0 41.0 22-23 38.31867180968493 40.0 38.0 41.0 33.0 41.0 24-25 38.20629567025628 40.0 38.0 41.0 32.0 41.0 26-27 38.125027151732425 40.0 38.0 41.0 32.0 41.0 28-29 38.13373953378357 40.0 38.0 41.0 32.0 41.0 30-31 38.08339438165066 40.0 37.5 41.0 32.0 41.0 32-33 37.979782213983846 40.0 37.0 41.0 32.0 41.0 34-35 37.8639591033149 40.0 37.0 41.0 31.5 41.0 36-37 37.82577411201042 40.0 37.0 41.0 31.0 41.0 38-39 37.75389017247338 40.0 37.0 41.0 31.0 41.0 40-41 37.67865823011611 40.0 37.0 41.0 31.0 41.0 42-43 37.655305768662345 40.0 37.0 41.0 31.0 41.0 44-45 37.59443287627563 40.0 37.0 41.0 31.0 41.0 46-47 37.46843355874274 40.0 36.0 41.0 30.0 41.0 48-49 37.65267358307055 40.0 37.0 41.0 31.0 41.0 50-51 37.61045342383558 40.0 36.5 41.0 31.0 41.0 52-53 37.56235736765741 40.0 36.0 41.0 31.0 41.0 54-55 37.43389504728913 39.5 36.0 41.0 31.0 41.0 56-57 37.31415741006629 39.0 36.0 41.0 30.0 41.0 58-59 37.214439859274144 39.0 35.0 41.0 30.5 41.0 60-61 36.997262597802745 39.0 35.0 41.0 30.5 41.0 62-63 36.831222591531095 39.0 35.0 41.0 30.0 41.0 64-65 36.588517310809095 38.0 35.0 40.0 30.0 41.0 66-67 36.38008889475627 38.0 35.0 40.0 30.0 41.0 68-69 36.138509278194114 37.0 34.5 40.0 30.0 41.0 70-71 35.90266326023851 37.0 34.0 39.5 30.0 41.0 72-73 35.60661222737568 36.0 34.0 39.0 30.0 41.0 74-75 35.432955231086886 36.0 34.0 39.0 30.0 41.0 76-77 35.23164834919796 36.0 34.0 38.5 30.0 40.0 78-79 34.9638323362284 35.0 34.0 37.0 30.0 39.0 80-81 34.698286467582605 35.0 34.0 37.0 30.0 39.0 82-83 34.43193056882441 35.0 34.0 36.5 30.0 39.0 84-85 34.203958985484576 35.0 34.0 36.0 30.0 37.5 86-87 34.00306928405854 35.0 34.0 36.0 30.0 37.0 88-89 33.84958281821203 35.0 34.0 35.5 29.5 37.0 90-91 33.70232256698087 35.0 34.0 35.0 29.0 36.0 92-93 33.64861264581709 35.0 34.0 35.0 29.0 36.0 94-95 33.61666838694924 35.0 34.0 35.0 30.0 36.0 96-97 33.61860628785034 35.0 34.0 35.0 30.0 36.0 98-99 33.64360778928124 35.0 34.0 35.0 30.0 35.5 100-101 33.24743703434157 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 5.0 17 65.0 18 425.0 19 1659.0 20 4603.0 21 9887.0 22 16950.0 23 26634.0 24 40252.0 25 59789.0 26 87379.0 27 121169.0 28 136101.0 29 117774.0 30 140206.0 31 174263.0 32 219496.0 33 289217.0 34 396753.0 35 559642.0 36 851919.0 37 1458673.0 38 2004950.0 39 1124644.0 40 53486.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.45639918028769 21.241800059042994 14.786128721073272 24.51567203959604 2 13.789236715249597 21.034498301937095 42.666274294148025 22.509990688665287 3 17.011819742904567 26.923269829118958 31.266729605997597 24.798180821978878 4 11.544387417300962 19.06551262755744 39.55364782890308 29.836452126238516 5 12.540481365242314 38.153453234120875 36.277433007464495 13.028632393172318 6 28.46354895423962 39.30475793597684 19.207773647730637 13.02391946205291 7 25.207045468105743 33.22919990641039 23.787265302337623 17.776489323146237 8 23.31566930466156 37.6880090619228 21.69310487372174 17.303216759693896 9 24.672017361875834 17.251958321264866 21.722405783948446 36.35361853291085 10-11 23.3471059555548 27.28090390190996 29.64682497679041 19.725165165744833 12-13 24.446427913699402 24.63809200841821 29.51790901274035 21.39757106514204 14-15 21.432990066094114 26.16631020698935 27.056755451775043 25.34394427514149 16-17 21.128981711399526 29.360976437289622 27.730142474043113 21.779899377267743 18-19 21.04732100815881 28.298864919550244 29.58065415494493 21.073159917346015 20-21 21.811395789565818 27.536277043709028 29.411922294922928 21.24040487180223 22-23 21.427702632333144 27.726274450776884 29.285691298813816 21.56033161807616 24-25 21.34480873460222 27.779915068760435 29.444302299254687 21.430973897382653 26-27 21.355987340813407 27.849569277455128 29.416355984483864 21.378087397247594 28-29 20.994893999210458 27.86744456805545 29.625836317051508 21.51182511568258 30-31 21.448102624168307 27.660095263675316 29.219281046768653 21.672521065387727 32-33 21.544264975979914 27.730868121176123 29.396454591031635 21.32841231181233 34-35 21.49984504625382 28.079329170259705 29.311970904434638 21.108854879051837 36-37 21.346888450734795 27.843003005873186 29.21968434071585 21.59042420267617 38-39 21.221111039762654 27.790859163317887 29.43576458607049 21.55226521084897 40-41 21.466590968303905 27.680759005707188 29.418191975714308 21.434458050274603 42-43 21.719114503101675 27.624399499003793 29.184751255801306 21.471734742093226 44-45 21.46304961078843 28.12825374604339 28.914121063010445 21.494575580157736 46-47 21.781108365664775 27.73514971348944 28.496181861763993 21.987560059081787 48-49 21.75015939112123 27.74516792703658 28.517814628829356 21.98685805301284 50-51 21.434741877652456 27.925243742870805 28.68134835018673 21.95866602929001 52-53 21.585127491922222 27.92764661050391 28.83605233429712 21.651173563276753 54-55 21.670211713104113 27.900950033123145 28.52125371533738 21.907584538435366 56-57 21.948618563660332 28.18950432074942 28.0839236582299 21.77795345736035 58-59 21.499961557014853 28.54764913820037 28.54702818980146 21.405361114983318 60-61 21.822344263020014 28.865156247491452 27.892888920309794 21.41961056917874 62-63 21.523000886203747 29.09139556369262 27.83401269460034 21.551590855503296 64-65 21.470759685219374 28.966581256004257 27.96576908987194 21.596889968904428 66-67 21.589804286257767 28.828284298494506 27.913622915821435 21.668288499426293 68-69 21.64913539425331 28.56447438160271 28.088935707559408 21.697454516584568 70-71 21.700888475500207 28.097830193279062 28.223558911795237 21.977722419425497 72-73 21.75124027753326 28.137627545070565 28.29128352360703 21.819848653789148 74-75 21.70764847368275 28.226526298261135 28.225181685985785 21.840643542070335 76-77 21.67765635661742 28.244303623245 28.14103025408732 21.93700976605026 78-79 21.671903890513946 28.199424842187458 28.196742333315996 21.931928933982604 80-81 21.65541895077118 28.23605375705999 28.191257252002444 21.917270040166382 82-83 21.767682666225912 28.163011142077615 28.291441925341378 21.777864266355095 84-85 21.945806452026268 28.13692579774151 28.138495548075927 21.778772202156294 86-87 21.62317920166994 28.25186438754032 28.229056715321143 21.895899695468593 88-89 21.801606965142355 28.127482582313036 28.175572315314707 21.895338137229903 90-91 21.839952659689644 28.202943488706083 28.16038295201904 21.796720899585225 92-93 21.79875506069138 28.18874318990275 28.213713126971125 21.79878862243475 94-95 21.60316407789781 28.269427325085783 28.21046122235082 21.916947374665586 96-97 21.595284003671654 28.28147323890043 28.290843933752118 21.832398823675796 98-99 21.872223842236252 28.82899635550381 28.305601945063795 20.99317785719614 100-101 22.481427369550357 31.46499322535882 25.54088804564616 20.512691359444663 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1604.0 1 1382.0 2 1873.5 3 2643.0 4 3486.0 5 5739.0 6 7583.5 7 8796.5 8 9339.5 9 8640.5 10 7314.5 11 6252.0 12 7081.0 13 10200.5 14 17757.0 15 28442.0 16 37350.5 17 42332.0 18 43551.5 19 41961.0 20 38605.0 21 35481.0 22 35024.0 23 39105.0 24 47701.5 25 60252.5 26 75990.0 27 93581.0 28 112764.5 29 133324.5 30 152355.5 31 170328.5 32 190824.5 33 211034.5 34 230795.0 35 250690.5 36 270061.5 37 288007.5 38 298542.5 39 303115.5 40 310291.5 41 316211.0 42 318054.0 43 320951.0 44 324888.5 45 332537.5 46 346824.5 47 353031.5 48 344886.5 49 327864.0 50 306921.0 51 288475.0 52 270176.5 53 253038.5 54 234922.5 55 213775.0 56 191822.5 57 168397.0 58 146396.5 59 126277.0 60 104283.0 61 82974.5 62 64739.0 63 50115.5 64 38035.0 65 28053.0 66 20840.5 67 15704.5 68 11877.0 69 8878.5 70 6875.0 71 5279.0 72 3809.5 73 2696.0 74 1872.5 75 1282.5 76 880.0 77 580.5 78 393.0 79 277.0 80 200.0 81 144.5 82 108.5 83 79.5 84 57.0 85 45.0 86 35.0 87 25.5 88 16.5 89 10.0 90 7.5 91 7.5 92 6.5 93 4.5 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.6617525384244893 3 0.006421020623127756 4 8.413145437636881 5 3.039536389646275E-4 6 0.0734174685449144 7 0.02408832588794673 8 5.699130730586765E-4 9 2.532946991371896E-4 10-11 0.272323463409871 12-13 0.28534914331300093 14-15 4.432657234900818E-5 16-17 1.45644452003884E-4 18-19 0.4276501052882741 20-21 2.216673080240779E-4 22-23 1.520391105407955E-4 24-25 0.16094398842485919 26-27 0.14078856558723485 28-29 1.0149949646734174E-4 30-31 1.2702315333580904E-4 32-33 1.336586627616273E-4 34-35 3.446241127365031E-4 36-37 2.3702031891916685E-4 38-39 0.001346084684055247 40-41 0.0017498459163456995 42-43 0.0010959742712211443 44-45 8.417376121048182E-4 46-47 0.0013408791640189281 48-49 0.0022305551356053602 50-51 3.174714680961439E-4 52-53 0.001633429329067542 54-55 4.869514166514066E-4 56-57 0.008188487926544839 58-59 2.0930801097108868E-4 60-61 0.002506724499711304 62-63 0.001336360616628065 64-65 0.0013788464699699089 66-67 0.004422984616946655 68-69 0.0017201399870504334 70-71 0.0023001350156922804 72-73 0.0033103066397227768 74-75 6.305204247215967E-4 76-77 2.685207796339724E-4 78-79 6.512406871612628E-4 80-81 4.545460957546805E-4 82-83 0.001545043851910003 84-85 1.6017834898088927E-4 86-87 3.724348649879084E-4 88-89 1.3920046365217963E-4 90-91 2.2374063852595026E-4 92-93 0.0 94-95 0.0 96-97 5.1771767957555433E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 788.0 20-21 1887.0 22-23 2513.0 24-25 3147.0 26-27 4307.0 28-29 7027.0 30-31 15820.0 32-33 19897.0 34-35 26404.0 36-37 38828.0 38-39 48392.0 40-41 49206.0 42-43 57435.0 44-45 69710.0 46-47 69600.0 48-49 64345.0 50-51 56563.0 52-53 55354.0 54-55 59448.0 56-57 62922.0 58-59 64385.0 60-61 66783.0 62-63 70132.0 64-65 75824.0 66-67 81934.0 68-69 86018.0 70-71 75176.0 72-73 64419.0 74-75 64057.0 76-77 66896.0 78-79 69392.0 80-81 69823.0 82-83 67754.0 84-85 67178.0 86-87 68570.0 88-89 71539.0 90-91 74853.0 92-93 74869.0 94-95 83204.0 96-97 127898.0 98-99 636104.0 100-101 5055540.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.3084851328132 #Duplication Level Percentage of deduplicated Percentage of total 1 88.91986610775562 74.077793436497 2 7.315318087922264 12.188561363389427 3 2.0512340019358017 5.126555920625689 4 0.789319210839202 2.6302795096496605 5 0.3599953890592158 1.4995335258660492 6 0.1947929003964849 0.9736740867994874 7 0.1099234448419494 0.6410288969254208 8 0.0762412752784586 0.508123611843375 9 0.044899455592998114 0.3366455065866621 >10 0.13549466283984973 1.654241225595638 >50 0.0018972407501671733 0.1021415099501644 >100 8.36269686597467E-4 0.15063647165410562 >500 1.5595991054058561E-4 0.08090167839101114 >1k 2.599319080501045E-5 0.029883256226323544 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.266473495685948E-5 0.0 0.0 0.0 3 0.0 1.266473495685948E-5 0.0 1.266473495685948E-5 0.0 4 0.0 3.799420487057844E-5 0.0 1.266473495685948E-5 0.0 5 0.0 3.799420487057844E-5 0.0 1.266473495685948E-5 0.0 6 0.0 3.799420487057844E-5 0.0 1.266473495685948E-5 0.0 7 0.0 3.799420487057844E-5 0.0 1.266473495685948E-5 0.0 8 0.0 3.799420487057844E-5 0.0 1.266473495685948E-5 0.0 9 0.0 6.33236747842974E-5 0.0 6.33236747842974E-5 0.0 10-11 0.0 6.33236747842974E-5 0.0 6.33236747842974E-5 0.0 12-13 0.0 6.33236747842974E-5 0.0 7.598840974115689E-5 0.0 14-15 0.0 8.232077721958662E-5 0.0 1.0765024713330559E-4 0.0 16-17 0.0 8.865314469801637E-5 0.0 1.4564445200388403E-4 0.0 18-19 0.0 9.49855121764461E-5 0.0 1.773062893960327E-4 0.0 20-21 0.0 1.0131787965487584E-4 0.0 2.2163286174504092E-4 0.0 22-23 0.0 1.0765024713330559E-4 0.0 2.532946991371896E-4 0.0 24-25 0.0 1.2031498209016505E-4 0.0 2.849565365293383E-4 0.0 26-27 0.0 1.393120845254543E-4 0.0 3.7360968122735464E-4 0.0 28-29 0.0 1.4564445200388403E-4 0.0 8.675343445448744E-4 0.0 30-31 0.0 1.7730628939603273E-4 0.0 0.0027102532807679286 0.0 32-33 0.0 1.899710243528922E-4 0.0 0.007776147263511721 0.0 34-35 0.0 2.216328617450409E-4 0.0 0.014672095447521707 0.0 36-37 0.0 2.7229180157247883E-4 0.0 0.023885690128636977 0.0 38-39 0.0 3.1028600644305725E-4 0.0 0.03651876324810431 0.0 40-41 0.0 3.482802113136357E-4 0.0 0.04817031940841503 0.0 42-43 0.0 3.672773137489249E-4 0.0 0.0582767779039889 0.0 44-45 0.0 3.7360968122735464E-4 0.0 0.06926976784654293 0.0 46-47 0.0 3.799420487057844E-4 0.0 0.07983848916804216 0.0 48-49 0.0 3.799420487057844E-4 0.0 0.08919139593368289 0.0 50-51 0.0 4.0527151861950337E-4 0.0 0.0971385171191122 0.0 52-53 0.0 4.1793625357636286E-4 0.0 0.10415478028521237 0.0 54-55 0.0 4.3693335601165204E-4 0.0 0.11082276323999887 0.0 56-57 0.0 4.432657234900818E-4 0.0 0.11744008725495797 0.0 58-59 0.0 4.432657234900818E-4 0.0 0.12362681028138381 0.0 60-61 0.0 4.432657234900818E-4 0.0 0.1293259410119706 0.0 62-63 0.0 4.432657234900818E-4 0.0 0.13449315287436925 0.0 64-65 0.0 5.065893982743792E-4 0.0 0.1399326565383404 0.0 66-67 0.0 5.065893982743792E-4 0.0 0.14547981044944486 0.0 68-69 0.0 5.319188681880982E-4 0.0 0.15090031701098072 0.0 70-71 0.0 5.38251235666528E-4 0.0 0.15592821678885393 0.0 72-73 0.0 5.445836031449577E-4 0.0 0.16000626144496266 0.0 74-75 0.0 5.509159706233873E-4 0.0 0.16319777465409127 0.0 76-77 0.0 5.572483381018171E-4 0.0 0.1661423255315611 0.0 78-79 0.0 5.63580705580247E-4 0.0 0.16868793725788983 0.0 80-81 0.0 5.762454405371063E-4 0.0 0.16992908128366208 0.0 82-83 0.0 5.889101754939658E-4 0.0 0.1703660146396737 0.0 84-85 0.0 6.07907277929255E-4 0.0 0.17079661562820694 0.0 86-87 0.0 6.07907277929255E-4 0.0 0.17089160114038338 0.0 88-89 0.0 6.205720128861145E-4 0.0 0.17091059824281868 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9420 0.0 52.80787 1 CTTATAC 8825 0.0 41.734722 1 GTATCAA 17035 0.0 40.942524 1 TATACAC 12360 0.0 33.13462 3 ATCAACG 20775 0.0 32.65435 3 TCAACGC 21085 0.0 32.25966 4 TATCAAC 22275 0.0 30.97627 2 TTATACA 12695 0.0 30.407644 2 CAACGCA 21565 0.0 29.988985 5 AACGCAG 22555 0.0 28.953579 6 ACGCAGA 25050 0.0 25.982985 7 CGCAGAG 25455 0.0 25.58103 8 ACATCTC 15360 0.0 22.661995 8 GCAGAGT 29855 0.0 21.638481 9 ACACATC 16730 0.0 20.773972 6 TACACAT 18070 0.0 20.579432 5 CACATCT 17030 0.0 20.418844 7 CATCTCC 17030 0.0 20.238205 9 GAGTACT 19420 0.0 19.45139 12-13 ATACACA 22800 0.0 19.447523 4 >>END_MODULE