##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139965_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14453804 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.744026209294105 33.0 31.0 34.0 30.0 34.0 2 31.46204715381501 33.0 31.0 34.0 28.0 34.0 3 31.772384626220198 33.0 31.0 34.0 30.0 34.0 4 33.067276268586454 37.0 35.0 37.0 28.0 37.0 5 34.471241134859724 37.0 35.0 37.0 28.0 37.0 6 35.07745096031467 37.0 35.0 37.0 32.0 37.0 7 35.20075704638032 37.0 35.0 37.0 32.0 37.0 8 35.35300333393202 37.0 35.0 37.0 32.0 37.0 9 37.099059112742914 39.0 37.0 39.0 32.0 39.0 10-11 36.991655380133835 39.0 37.0 39.0 33.0 39.0 12-13 36.88854965101228 39.0 37.0 39.0 32.0 39.0 14-15 38.22589188285659 40.0 38.0 41.0 32.0 41.0 16-17 38.22431869838556 40.0 38.0 41.0 32.0 41.0 18-19 38.17518512773523 40.0 38.0 41.0 32.5 41.0 20-21 38.226903780629314 40.0 38.0 41.0 32.0 41.0 22-23 38.26719646172599 40.0 38.0 41.0 32.0 41.0 24-25 38.15938959625343 40.0 38.0 41.0 32.0 41.0 26-27 38.07568707634947 40.0 38.0 41.0 32.0 41.0 28-29 38.08300808902149 40.0 38.0 41.0 32.0 41.0 30-31 38.03317203219967 40.0 37.5 41.0 32.0 41.0 32-33 37.93569879793566 40.0 37.0 41.0 32.0 41.0 34-35 37.83016082924189 40.0 37.0 41.0 31.0 41.0 36-37 37.79363464317012 40.0 37.0 41.0 31.0 41.0 38-39 37.730094250374606 40.0 37.0 41.0 31.0 41.0 40-41 37.64335299372978 40.0 37.0 41.0 31.0 41.0 42-43 37.61833397434728 40.0 37.0 41.0 31.0 41.0 44-45 37.56407594693215 40.0 37.0 41.0 31.0 41.0 46-47 37.43553129257228 40.0 36.0 41.0 30.0 41.0 48-49 37.621104841503055 40.0 37.0 41.0 31.0 41.0 50-51 37.586875970215594 40.0 36.5 41.0 31.0 41.0 52-53 37.52311987771784 40.0 36.0 41.0 31.0 41.0 54-55 37.40324687732556 39.5 36.0 41.0 30.5 41.0 56-57 37.278148419501804 39.0 36.0 41.0 30.0 41.0 58-59 37.16851244505877 39.0 35.0 41.0 30.5 41.0 60-61 36.96320022149325 39.0 35.0 41.0 30.5 41.0 62-63 36.78152800558034 39.0 35.0 41.0 30.0 41.0 64-65 36.530299250982296 38.0 35.0 40.0 30.0 41.0 66-67 36.31762094525702 38.0 35.0 40.0 30.0 41.0 68-69 36.06896239651016 37.0 34.5 40.0 30.0 41.0 70-71 35.82436928953683 37.0 34.0 39.5 30.0 41.0 72-73 35.525492731036906 36.0 34.0 39.0 30.0 41.0 74-75 35.344395669878054 36.0 34.0 39.0 30.0 40.5 76-77 35.14974610768725 35.5 34.0 38.5 30.0 40.0 78-79 34.889576444619415 35.0 34.0 37.0 30.0 39.0 80-81 34.629712560017936 35.0 34.0 37.0 30.0 39.0 82-83 34.377839616154134 35.0 34.0 36.5 30.0 39.0 84-85 34.16048618325435 35.0 34.0 36.0 30.0 37.0 86-87 33.96856004895695 35.0 34.0 36.0 30.0 37.0 88-89 33.823472530840235 35.0 34.0 35.0 29.5 37.0 90-91 33.688041887733235 35.0 34.0 35.0 29.0 36.0 92-93 33.63835470396016 35.0 34.0 35.0 29.5 36.0 94-95 33.609646981642506 35.0 34.0 35.0 30.0 36.0 96-97 33.61428273814086 35.0 34.0 35.0 30.0 36.0 98-99 33.643295618905285 35.0 34.0 35.0 30.0 35.5 100-101 33.25178927953141 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 19.0 17 241.0 18 1232.0 19 4852.0 20 13389.0 21 27847.0 22 44854.0 23 63965.0 24 88567.0 25 122968.0 26 167778.0 27 217998.0 28 233380.0 29 215165.0 30 258092.0 31 317060.0 32 399528.0 33 521640.0 34 712186.0 35 1005830.0 36 1538446.0 37 2668909.0 38 3656234.0 39 2067143.0 40 106478.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.127643906060996 20.751582074864167 14.775432128455595 24.345341890619245 2 14.093803183030177 21.13690036721321 42.02721044328799 22.742086006468618 3 17.427157592615284 26.483097243116756 31.02073296261596 25.069012201652 4 12.024228523508597 18.63475057814088 39.16099896284435 30.18002193550617 5 12.974846197449397 37.76442515749709 35.91905053903279 13.341678106020725 6 29.123689659534246 38.7040338411542 18.971038764275562 13.201237735035997 7 25.597343975295473 33.06690828283209 23.590972970563996 17.744774771308442 8 23.640897728005474 37.48978464523903 21.497582769626558 17.37173485712894 9 25.004951996936438 17.21595722636974 21.558265268599566 36.22082550809426 10-11 23.67052050688459 27.11316458106548 29.37216227507391 19.84415263697602 12-13 24.575945171957862 24.598478916726297 29.410755062218254 21.414820849097588 14-15 21.72841457900849 26.04634976488874 26.92888269136237 25.296352964740404 16-17 21.32075983413619 29.270500476484155 27.58720794676218 21.82153174261747 18-19 21.3735060250527 28.282206489816925 29.35542122742288 20.988866257707496 20-21 22.073491446624267 27.484273920192344 29.22501669722274 21.217217935960655 22-23 21.80238604120863 27.506814439741827 29.118671331263574 21.572128187785964 24-25 21.668949391481075 27.61834732295577 29.191974370966378 21.520728914596777 26-27 21.69275919196692 27.76185369070683 29.082769462456685 21.462617654869568 28-29 21.541372497914534 27.80315146855739 29.126455832409253 21.52902020111883 30-31 22.028429726406696 27.556195258939802 29.05306924150403 21.362305773149476 32-33 21.512195578535398 27.870722799936853 29.02455379099717 21.592527830530578 34-35 21.75929255982716 27.80747606765256 29.036617769799598 21.396613602720677 36-37 21.66540180294075 27.785197330306914 29.014778753289473 21.534622113462866 38-39 21.55442193658471 27.689230541434284 29.152069070064236 21.604278451916773 40-41 21.805526020895304 27.591513834855053 28.990323451611722 21.612636692637924 42-43 21.811631004389987 27.631085727731048 28.870878796790333 21.68640447108863 44-45 21.73425215231748 27.83334544847385 28.673304898732145 21.759097500476525 46-47 21.98641263957027 27.69153684122258 28.311231234798623 22.010819284408527 48-49 21.855438414662107 27.805423071089535 28.328743243831116 22.01039527041724 50-51 21.7775178680523 27.925365135727215 28.341042777686226 21.956074218534262 52-53 21.928164564294324 27.885798466739363 28.346972531509422 21.839064437456884 54-55 21.87779343037744 27.807220768694762 28.273237638305716 22.04174816262208 56-57 22.002762239205047 27.976185337389282 28.084138194108633 21.936914229297038 58-59 21.818672571247458 28.157708977603075 28.241263351969444 21.782355099180027 60-61 22.01469430630241 28.25800810919591 28.008656365174332 21.718641219327353 62-63 21.856815455899014 28.458000792083176 27.900424992730883 21.784758759286923 64-65 21.84684318405553 28.330668569769617 27.930299170902213 21.892189075272636 66-67 21.945309164280552 28.30101596312293 27.865802096196106 21.887872776400414 68-69 21.893720764127146 28.183322740559785 27.98263076570493 21.940325729608144 70-71 21.92421217203117 27.883589302395528 28.085425099108225 22.106773426465082 72-73 22.016112183183758 27.93182965548996 27.985735202235684 22.066322959090602 74-75 21.854341669395385 28.039708111908713 28.012978310561863 22.092971908134036 76-77 22.006682567063667 27.992729312876907 27.938960753775287 22.061627366284135 78-79 21.966531565772094 28.001307328615116 27.914744097313726 22.11741700829906 80-81 21.962788264383445 28.00620635816132 27.924749314562707 22.10625606289253 82-83 21.9736096506838 28.01873374011142 27.987940807641486 22.019715801563297 84-85 22.085016535656703 27.975101843122058 27.93482642967745 22.005055191543786 86-87 21.938872542510637 27.993020662267558 28.002689024440286 22.06541777078152 88-89 21.96460382572011 28.015267948243157 27.95090029159034 22.069227934446392 90-91 22.022390622289635 27.9972613649012 27.986802066536676 21.99354594627249 92-93 22.031557791201532 27.981167613023977 27.94567717575877 22.04159742001572 94-95 21.88281540677277 28.06577209694636 27.98115604123637 22.070256455044497 96-97 21.918180407141705 28.06406160505141 28.000651190212334 22.01710679759455 98-99 22.16423724405294 28.619533923348982 28.06428607135783 21.151942761240246 100-101 22.787736448180958 31.21097196276766 25.2621453754004 20.739146213650983 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4064.0 1 3294.5 2 3607.0 3 4802.0 4 6068.5 5 9545.5 6 12599.0 7 15020.0 8 16684.5 9 16160.5 10 14160.0 11 12410.0 12 13558.0 13 18457.0 14 30907.5 15 48461.0 16 62926.5 17 71590.0 18 74457.5 19 72015.0 20 66945.0 21 62706.5 22 62947.5 23 70814.5 24 86023.5 25 108966.0 26 138577.0 27 171422.5 28 206080.0 29 240834.0 30 273411.5 31 308087.5 32 344509.5 33 378285.5 34 411830.5 35 442761.5 36 474952.5 37 503815.5 38 522637.0 39 537523.0 40 556308.0 41 575586.5 42 587702.5 43 598784.0 44 614132.5 45 630124.5 46 627381.0 47 614859.0 48 601239.5 49 580109.5 50 560582.0 51 538860.5 52 510809.5 53 479997.5 54 447987.0 55 413870.5 56 378709.5 57 341843.5 58 303298.0 59 263023.0 60 220704.0 61 180056.0 62 143686.0 63 112022.5 64 84860.0 65 63641.5 66 47789.5 67 36368.5 68 27901.5 69 20633.5 70 15097.0 71 11098.0 72 8043.0 73 5587.0 74 3823.0 75 2645.5 76 1854.5 77 1234.5 78 835.0 79 590.0 80 426.0 81 319.5 82 241.0 83 161.5 84 112.5 85 77.0 86 56.0 87 48.0 88 33.5 89 24.0 90 20.5 91 17.5 92 14.0 93 7.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.6151803359171053 3 0.0063996993455840406 4 8.324043967940895 5 3.113367249203047E-4 6 0.07143448188449214 7 0.023080429207425257 8 4.981387598724875E-4 9 2.698251615975974E-4 10-11 0.26357421202058645 12-13 0.27581666390384146 14-15 6.226734498406094E-5 16-17 1.2453468996812187E-4 18-19 0.4147454884541122 20-21 1.5224093290198864E-4 22-23 1.349854817922583E-4 24-25 0.15365412713946708 26-27 0.13785853074186688 28-29 9.707100043383803E-5 30-31 1.2149767335426889E-4 32-33 9.74271609318198E-5 34-35 2.7222049525074703E-4 36-37 3.014074606898081E-4 38-39 0.0013114397168531144 40-41 0.0016076218166559484 42-43 0.001107839252810311 44-45 8.360998809242405E-4 46-47 0.001350245000317544 48-49 0.002424931113585684 50-51 2.928238475148355E-4 52-53 0.0014985578156124387 54-55 3.6553164693863476E-4 56-57 0.007674199284960855 58-59 1.612571484430027E-4 60-61 0.0026368907924310533 62-63 0.001468684877288637 64-65 0.0013809334635393998 66-67 0.004516770199654445 68-69 0.002064273210687981 70-71 0.0024742902197411407 72-73 0.0035703797649762315 74-75 6.906336928284012E-4 76-77 4.0195094294517917E-4 78-79 8.644693510522732E-4 80-81 4.1568380180248294E-4 82-83 0.0015028197367287655 84-85 2.3490611844010815E-4 86-87 3.9462547015925155E-4 88-89 9.98580517793956E-5 90-91 2.666539285778486E-4 92-93 0.0 94-95 0.0 96-97 3.839563456993194E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1916.0 20-21 4569.0 22-23 5779.0 24-25 6865.0 26-27 9177.0 28-29 14440.0 30-31 32009.0 32-33 40293.0 34-35 54086.0 36-37 78379.0 38-39 93780.0 40-41 95418.0 42-43 110661.0 44-45 134074.0 46-47 132448.0 48-49 122575.0 50-51 110922.0 52-53 109512.0 54-55 117709.0 56-57 124974.0 58-59 127574.0 60-61 128854.0 62-63 128069.0 64-65 136063.0 66-67 143561.0 68-69 148522.0 70-71 138295.0 72-73 126275.0 74-75 127280.0 76-77 131832.0 78-79 136158.0 80-81 136953.0 82-83 131145.0 84-85 130727.0 86-87 132836.0 88-89 139060.0 90-91 143073.0 92-93 144493.0 94-95 158368.0 96-97 240325.0 98-99 1155463.0 100-101 9069292.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.20941239684518 #Duplication Level Percentage of deduplicated Percentage of total 1 89.8976769200587 76.60128226199632 2 7.046716272103767 12.008931057464988 3 1.711892574656063 4.376080811188967 4 0.6116348085809653 2.0846817056256373 5 0.2892883481318248 1.2325045078783385 6 0.1435462250481928 0.7338893692885086 7 0.08594437767196136 0.5126288944168258 8 0.05573394358703343 0.37992452668880294 9 0.03488888329560813 0.2675575120320789 >10 0.11938512702409283 1.5155699025896066 >50 0.0025237486228974182 0.140238033500791 >100 7.154386487802424E-4 0.10850711372548574 >500 4.000428490860432E-5 0.022929201193868327 >1k 1.3328285156496523E-5 0.01527510240965381 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.918593887117883E-6 2 0.0 3.459296943558941E-5 0.0 2.075578166135365E-5 6.918593887117883E-6 3 0.0 3.459296943558941E-5 0.0 3.459296943558941E-5 6.918593887117883E-6 4 0.0 7.610453275829671E-5 0.0 6.226734498406095E-5 6.918593887117883E-6 5 0.0 7.610453275829671E-5 0.0 6.226734498406095E-5 6.918593887117883E-6 6 0.0 7.610453275829671E-5 0.0 6.226734498406095E-5 6.918593887117883E-6 7 0.0 8.994172053253247E-5 0.0 6.226734498406095E-5 6.918593887117883E-6 8 0.0 1.0377890830676824E-4 0.0 7.610453275829671E-5 1.3837187774235766E-5 9 6.918593887117883E-6 2.006392227264186E-4 0.0 8.30231266454146E-5 1.3837187774235766E-5 10-11 2.075578166135365E-5 2.1101711355709542E-4 0.0 1.1415679913744507E-4 1.3837187774235766E-5 12-13 3.459296943558941E-5 2.2139500438777225E-4 0.0 1.3837187774235765E-4 1.3837187774235766E-5 14-15 4.151156332270729E-5 2.802030524282742E-4 0.0 1.6604625329082916E-4 1.3837187774235766E-5 16-17 4.843015720982518E-5 2.9404024020251E-4 0.0 1.7988344106506494E-4 2.7674375548471532E-5 18-19 6.226734498406095E-5 3.217146157509815E-4 0.0 1.7988344106506494E-4 3.459296943558942E-5 20-21 7.264523581473777E-5 3.701447729608067E-4 0.0 2.040985196699775E-4 4.4970860266266234E-5 22-23 8.30231266454146E-5 4.635457904368981E-4 0.0 2.6636586465403843E-4 5.8808048040502E-5 24-25 1.003196113632093E-4 4.946794629289285E-4 0.0 2.9749953714606895E-4 6.918593887117882E-5 26-27 1.0377890830676824E-4 5.119759476467233E-4 0.0 3.943598515657193E-4 6.918593887117882E-5 28-29 1.0377890830676824E-4 5.119759476467233E-4 0.0 0.001006655410575652 7.610453275829671E-5 30-31 1.1069750219388613E-4 5.707839956872253E-4 0.0 0.0034523783496718235 7.610453275829671E-5 32-33 1.3837187774235765E-4 5.846211834614611E-4 0.0 0.009644519878642328 7.610453275829671E-5 34-35 1.418311746859166E-4 6.745629039939936E-4 0.0 0.01865252911966981 8.30231266454146E-5 36-37 1.4529047162947553E-4 7.679639214700849E-4 0.0 0.031140591085917588 8.648242358897352E-5 38-39 1.4529047162947553E-4 7.990975939621155E-4 0.0 0.047364693751209025 9.686031441965035E-5 40-41 1.5220906551659342E-4 8.994172053253248E-4 0.0 0.062886559136958 9.686031441965035E-5 42-43 1.5220906551659342E-4 9.582252533658268E-4 0.0 0.07758165255319638 1.003196113632093E-4 44-45 1.5566836246015236E-4 0.0010896785372210664 0.0 0.09343215114858344 1.0377890830676824E-4 46-47 1.591276594037113E-4 0.0011830795546971579 0.0 0.10856657527665381 1.0377890830676824E-4 48-49 1.591276594037113E-4 0.0011969167424713935 0.0 0.12189178710324286 1.0377890830676824E-4 50-51 1.591276594037113E-4 0.0013837187774235766 0.0 0.13328325193838245 1.0377890830676824E-4 52-53 1.660462532908292E-4 0.0014113931529720482 0.0 0.14313532963363831 1.1069750219388613E-4 54-55 1.7296484717794708E-4 0.0014252303407462838 0.0 0.1526241811498205 1.17616096081004E-4 56-57 1.7296484717794708E-4 0.0014598233101818733 0.0 0.16003399520292372 1.2799398691168082E-4 58-59 1.7296484717794708E-4 0.0014805790918432267 0.0 0.16598398594584512 1.3837187774235765E-4 60-61 1.7988344106506494E-4 0.001525549952109493 0.0 0.17177138973241923 1.4529047162947553E-4 62-63 1.7988344106506494E-4 0.0015497650307144057 0.0 0.17718173015214542 1.4529047162947553E-4 64-65 1.7988344106506494E-4 0.0016812183145696455 0.0 0.18234300119193536 1.4529047162947553E-4 66-67 1.7988344106506494E-4 0.0016846776115132045 0.0 0.187310551602886 1.591276594037113E-4 68-69 1.8680203495218282E-4 0.0017573228473279421 0.0 0.19277970007065268 1.7296484717794705E-4 70-71 1.8680203495218282E-4 0.001774619332045737 0.0 0.19794097111044262 1.7988344106506494E-4 72-73 1.8680203495218282E-4 0.0017780786289892958 0.0 0.20200564501912438 2.1447641050065437E-4 74-75 1.8680203495218282E-4 0.0018472645678604747 0.0 0.20527813992773114 2.179357074442133E-4 76-77 1.8680203495218282E-4 0.0019199098036752123 0.0 0.20822892022058692 2.2485430133133117E-4 78-79 2.006392227264186E-4 0.001944124882280125 0.0 0.21091333464878864 2.283135982748901E-4 80-81 2.006392227264186E-4 0.001951043476167243 0.0 0.21205144334321954 2.4561008299268483E-4 82-83 2.006392227264186E-4 0.0019648806639414786 0.0 0.21259801226030187 2.6636586465403843E-4 84-85 2.006392227264186E-4 0.001982177148659273 0.0 0.21292664546993995 2.698251615975974E-4 86-87 2.006392227264186E-4 0.0020271480089255394 0.0 0.2130304243782467 2.732844585411564E-4 88-89 2.006392227264186E-4 0.0021586012927807792 0.0 0.2130580987537952 2.767437554847153E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16230 0.0 54.05827 1 GTATCAA 30030 0.0 40.526836 1 ATCAACG 36215 0.0 32.777466 3 TCAACGC 36535 0.0 32.5515 4 TATCAAC 38620 0.0 30.973522 2 CAACGCA 38080 0.0 29.728014 5 CTTATAC 12905 0.0 29.22415 1 AACGCAG 39635 0.0 28.734375 6 ACGCAGA 45295 0.0 25.057772 7 CGCAGAG 45775 0.0 24.817068 8 TATACAC 18940 0.0 23.292635 3 GTGGTAT 7990 0.0 22.760826 1 TGGTATC 7980 0.0 21.223671 2 GCAGAGT 54095 0.0 20.787355 9 TTATACA 19955 0.0 20.337152 2 GAGTACT 33225 0.0 19.429298 12-13 GTACATG 35460 0.0 19.170143 1 ACATCTC 19085 0.0 18.984901 8 AGAGTAC 48600 0.0 18.952248 10-11 TACATGG 34760 0.0 18.837315 2 >>END_MODULE