##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139962_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16231787 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.775394415907503 33.0 31.0 34.0 30.0 34.0 2 31.45573497237242 33.0 31.0 34.0 28.0 34.0 3 31.791297532428192 33.0 31.0 34.0 30.0 34.0 4 32.9488836318515 37.0 35.0 37.0 26.0 37.0 5 34.41694669847504 37.0 35.0 37.0 28.0 37.0 6 35.09447567294963 37.0 35.0 37.0 32.0 37.0 7 35.24082739626881 37.0 35.0 37.0 32.0 37.0 8 35.38209415882552 37.0 35.0 37.0 32.0 37.0 9 37.13970525857689 39.0 37.0 39.0 33.0 39.0 10-11 37.01490436635227 39.0 37.0 39.0 33.0 39.0 12-13 36.90326228406028 39.0 37.0 39.0 32.0 39.0 14-15 38.241269430161935 40.0 38.0 41.0 32.0 41.0 16-17 38.231934074787944 40.0 38.0 41.0 32.0 41.0 18-19 38.17139280474787 40.0 38.0 41.0 32.0 41.0 20-21 38.24142206762022 40.0 38.0 41.0 32.0 41.0 22-23 38.27844263784775 40.0 38.0 41.0 32.0 41.0 24-25 38.157180903210325 40.0 38.0 41.0 32.0 41.0 26-27 38.06043521428174 40.0 38.0 41.0 32.0 41.0 28-29 38.05654708736999 40.0 38.0 41.0 32.0 41.0 30-31 38.009486997605464 40.0 37.0 41.0 32.0 41.0 32-33 37.899260998506506 40.0 37.0 41.0 31.5 41.0 34-35 37.783783216525876 40.0 37.0 41.0 31.0 41.0 36-37 37.74066434253551 40.0 37.0 41.0 31.0 41.0 38-39 37.657169731724025 40.0 37.0 41.0 31.0 41.0 40-41 37.58665619794208 40.0 37.0 41.0 30.0 41.0 42-43 37.570219943775676 40.0 37.0 41.0 30.0 41.0 44-45 37.50340916857213 40.0 36.0 41.0 30.0 41.0 46-47 37.37357030216767 40.0 36.0 41.0 30.0 41.0 48-49 37.555935571410586 40.0 36.5 41.0 30.0 41.0 50-51 37.49128300338411 40.0 36.0 41.0 30.0 41.0 52-53 37.44182425588832 40.0 36.0 41.0 30.0 41.0 54-55 37.32189821364261 39.0 36.0 41.0 30.0 41.0 56-57 37.171819945962525 39.0 35.0 41.0 30.0 41.0 58-59 37.069617994422956 39.0 35.0 41.0 30.5 41.0 60-61 36.866093872860006 39.0 35.0 41.0 30.0 41.0 62-63 36.699507641572495 38.5 35.0 41.0 30.0 41.0 64-65 36.45486621191067 38.0 35.0 40.0 30.0 41.0 66-67 36.24365062025858 37.5 35.0 40.0 30.0 41.0 68-69 35.99689895170782 37.0 34.0 40.0 30.0 41.0 70-71 35.760039632138216 37.0 34.0 39.5 30.0 41.0 72-73 35.46145623398601 36.0 34.0 39.0 30.0 41.0 74-75 35.28671119943606 36.0 34.0 39.0 30.0 40.5 76-77 35.08803027460395 35.5 34.0 38.5 30.0 40.0 78-79 34.823375543198566 35.0 34.0 37.0 30.0 39.0 80-81 34.568515662793416 35.0 34.0 37.0 30.0 39.0 82-83 34.31131634489703 35.0 34.0 36.5 30.0 39.0 84-85 34.093739857054835 35.0 34.0 36.0 29.0 37.0 86-87 33.90432423911906 35.0 34.0 36.0 29.0 37.0 88-89 33.76661964432541 35.0 34.0 35.0 29.0 37.0 90-91 33.63116505122604 35.0 34.0 35.0 29.0 36.0 92-93 33.59004144465473 35.0 34.0 35.0 29.0 36.0 94-95 33.56509289978392 35.0 34.0 35.0 29.0 36.0 96-97 33.57428639546782 35.0 34.0 35.0 29.5 36.0 98-99 33.610628098165236 35.0 34.0 35.0 30.0 35.5 100-101 33.22540206569768 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 11.0 17 137.0 18 845.0 19 3032.0 20 8615.0 21 18606.0 22 33380.0 23 54248.0 24 85160.0 25 130646.0 26 195324.0 27 276483.0 28 308966.0 29 258110.0 30 302867.0 31 370215.0 32 459565.0 33 597404.0 34 813496.0 35 1137578.0 36 1722341.0 37 2989243.0 38 4047035.0 39 2299496.0 40 118981.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.53740891252454 21.041158314854673 14.833240480545982 24.588192292074805 2 13.802985058149778 20.91507769434689 42.56020230657141 22.721734940931924 3 17.121289816890375 26.912162941879092 31.297531250675796 24.66901599055473 4 11.508817006537841 18.84117569441465 39.4463260966178 30.203681202429706 5 12.57546866364333 38.03100062550298 36.095040228904644 13.298490481949035 6 28.428358961772172 39.13009488413364 19.095448078281706 13.346098075812485 7 25.093998335313593 33.33937855938874 23.590296111933675 17.976326993363994 8 23.68630081513936 37.07814269396132 21.681612828918816 17.553943661980508 9 24.796904090380945 17.055312615899464 21.606999619264478 36.54078367445511 10-11 23.492561990773826 27.176985977644897 29.276670313762835 20.053781717818445 12-13 24.51265248396753 24.559381061725077 29.143670229115575 21.78429622519182 14-15 21.72384787627502 26.03274829871497 26.90178144108643 25.34162238392358 16-17 21.289941130243147 29.208824746343037 27.498865804111 22.00236831930282 18-19 21.154412234916972 28.100449120507164 29.344310307609383 21.400828336966484 20-21 22.166499303816963 27.387154235305 29.089794209933462 21.356552250944578 22-23 21.731784780745684 27.66416118864602 28.956759679688915 21.64729435091938 24-25 21.596274317157075 27.7178586742549 29.218792148593735 21.46707485999429 26-27 21.661158271866814 27.9836649413259 28.95981767699724 21.395359109810038 28-29 21.244189501777054 27.81002317347614 29.178574281231505 21.767213043515294 30-31 22.074856390035034 27.658366214704838 29.074930341638172 21.19184705362196 32-33 21.926006845678938 27.809996074040487 29.064701634201555 21.19929544607902 34-35 21.653839434451587 27.88708419151402 29.308374641119144 21.15070173291525 36-37 21.804983665562418 27.514759771780543 29.16035846191817 21.519898100738864 38-39 21.45794572498738 27.44489289722725 29.401903780086414 21.69525759769896 40-41 21.626559943427804 27.35797621460636 29.3971620137316 21.618301828234237 42-43 21.746346651554838 27.286842249385202 29.399490987748976 21.567320111310988 44-45 21.550945073544604 27.7838796292744 28.964590301721405 21.700584995459597 46-47 21.968083136014315 27.304532530213184 28.391972855251602 22.335411478520907 48-49 21.86764799931224 27.410214510673896 28.64966222733382 22.07247526268004 50-51 21.571443663491216 27.74141944793424 28.55834358778764 22.12879330078691 52-53 21.59406001632887 27.956195781239774 28.622977566453706 21.82676663597765 54-55 21.680848249179984 27.88520769435324 28.341172953016326 22.092771103450445 56-57 21.98081119130235 28.159134690208155 27.928659530792892 21.931394587696598 58-59 21.5240220217782 28.478018046813325 28.455616689097145 21.542343242311333 60-61 21.818387573238994 28.752157808898325 27.78302628224669 21.64642833561599 62-63 21.583070509497404 28.9249640635308 27.732086367524587 21.759879059447204 64-65 21.51058111631458 28.823201746201804 27.808467955767576 21.85774918171604 66-67 21.724106477571166 28.73103361577689 27.66966886569947 21.87519104095247 68-69 21.79311692714845 28.451629678809898 27.85560657876723 21.899646815274423 70-71 21.79634119283303 27.875658021485094 28.054583639886754 22.273417145795122 72-73 21.88053892919917 27.880564321500895 28.126156423300124 22.112740325999813 74-75 21.734931666924183 28.051239982464445 28.036011693845865 22.17781665676551 76-77 21.84572679179447 28.06359551070483 27.861695487614075 22.22898220988662 78-79 21.9296637204252 28.06659146654642 27.853818876893683 22.149925936134697 80-81 21.800157726443196 27.955430412581457 27.961624043550298 22.282787817425053 82-83 21.953447664152776 27.919667501639157 28.092870783328877 22.034014050879193 84-85 22.234259682692365 27.957081182583266 27.842093163373292 21.966565971351077 86-87 21.745429781628108 28.09069091407612 27.99597480889063 22.167904495405143 88-89 22.010723301171865 27.928641233233854 27.954272265973884 22.1063631996204 90-91 22.061674185595535 27.998839554892957 28.002348864784043 21.93713739472747 92-93 22.05861353055357 28.040503819974205 27.95387876333255 21.947003886139672 94-95 21.917966071821535 28.071283611760318 28.00285927157089 22.007891044847256 96-97 21.735847446409785 28.190890534543655 28.11111043380729 21.96215158523927 98-99 22.007995343191137 28.710876522670688 28.14709179923005 21.134036334908124 100-101 22.71588133574393 31.231115352766416 25.299684593260242 20.753318718229416 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4171.0 1 3591.0 2 4662.0 3 6514.0 4 8673.0 5 14272.0 6 18696.5 7 21197.5 8 21871.0 9 19792.0 10 16557.5 11 13790.5 12 15452.5 13 22760.5 14 40444.5 15 64933.5 16 84732.5 17 95710.0 18 96779.0 19 90121.0 20 80216.5 21 71030.5 22 67834.5 23 75302.5 24 91971.0 25 116374.5 26 150171.0 27 188060.5 28 223715.5 29 259055.5 30 291499.5 31 323763.5 32 362791.5 33 405156.0 34 452268.0 35 497772.5 36 542339.5 37 580914.5 38 598959.5 39 608466.0 40 628314.0 41 644502.5 42 652943.5 43 668478.0 44 684670.0 45 705577.5 46 736480.5 47 756182.0 48 750956.5 49 720646.0 50 673677.5 51 631437.5 52 592533.5 53 552991.0 54 512197.5 55 468034.5 56 422430.5 57 374638.5 58 323742.5 59 277265.0 60 230779.0 61 179655.0 62 136143.5 63 101235.0 64 72916.5 65 52265.0 66 38061.0 67 29230.5 68 22695.0 69 17150.0 70 12865.0 71 9147.0 72 6564.0 73 4550.0 74 3180.0 75 2295.0 76 1636.0 77 1103.0 78 794.0 79 583.5 80 414.0 81 299.5 82 227.5 83 169.0 84 127.0 85 99.0 86 74.5 87 55.5 88 38.5 89 25.5 90 17.5 91 11.0 92 7.5 93 5.0 94 3.5 95 2.0 96 1.0 97 2.0 98 2.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.7819972625318456 3 0.006271644643932304 4 8.673937133354448 5 3.0803755618528017E-4 6 0.07460669610807485 7 0.02529604411393521 8 5.175030943912706E-4 9 2.895553028141633E-4 10-11 0.2993662989786645 12-13 0.31487907030815526 14-15 7.700938904632004E-5 16-17 1.4169727584522888E-4 18-19 0.48186930989175747 20-21 2.618728288239294E-4 22-23 2.0030882073143288E-4 24-25 0.1743311487220417 26-27 0.1520666791291598 28-29 1.018491201578575E-4 30-31 1.88509790549553E-4 32-33 9.602700651140545E-5 34-35 3.57298914656389E-4 36-37 2.870252870837841E-4 38-39 0.0012428001542829686 40-41 0.001639591244532208 42-43 0.0010533108296073392 44-45 8.026106033528897E-4 46-47 0.0012747536149401383 48-49 0.0022769715387403445 50-51 3.670262796768026E-4 52-53 0.0015036981304997925 54-55 5.713649242568408E-4 56-57 0.009417128892721302 58-59 1.3703212735354818E-4 60-61 0.002537056183698395 62-63 0.0013492640885863017 64-65 0.00135055440258226 66-67 0.004716682961478161 68-69 0.0019900511992514205 70-71 0.002379567769407561 72-73 0.0035958687165134726 74-75 7.096921027237039E-4 76-77 3.3210269562032125E-4 78-79 8.188693770084269E-4 80-81 5.786944941559089E-4 82-83 0.001627057450765182 84-85 2.644316794280327E-4 86-87 4.4615986151197895E-4 88-89 1.4787112407192384E-4 90-91 2.8307520413156585E-4 92-93 0.0 94-95 0.0 96-97 4.354094089360814E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1580.0 20-21 4040.0 22-23 5374.0 24-25 7299.0 26-27 9729.0 28-29 15888.0 30-31 36102.0 32-33 45293.0 34-35 59777.0 36-37 87626.0 38-39 105339.0 40-41 111180.0 42-43 130319.0 44-45 156872.0 46-47 156499.0 48-49 144641.0 50-51 129053.0 52-53 117305.0 54-55 128509.0 56-57 144474.0 58-59 166377.0 60-61 162766.0 62-63 158150.0 64-65 172768.0 66-67 183479.0 68-69 191967.0 70-71 172254.0 72-73 146262.0 74-75 145146.0 76-77 151418.0 78-79 157019.0 80-81 158965.0 82-83 151456.0 84-85 151267.0 86-87 153295.0 88-89 160360.0 90-91 165583.0 92-93 166538.0 94-95 182509.0 96-97 271548.0 98-99 1279280.0 100-101 9986481.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.30199965229178 #Duplication Level Percentage of deduplicated Percentage of total 1 88.33901682408468 70.93799698291447 2 7.09985341847637 11.402648534836244 3 2.1686563634715768 5.224423276363049 4 0.9650217664013303 3.0997271020005455 5 0.48718474688880764 1.9560954687633445 6 0.2972493763772333 1.4321831591093122 7 0.1779622044818305 1.0003504617694723 8 0.11645609483984694 0.7481325829869317 9 0.08674205069897552 0.6269004112561387 >10 0.25739537869978785 3.03557285443518 >50 0.003153553271750644 0.16496027433623148 >100 0.0010957522743179312 0.16519913723275378 >500 1.062953618229769E-4 0.04771266253894119 >1k 1.0617467164320446E-4 0.1580970914573759 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2321502247411206E-5 2 6.160751123705603E-6 0.0 0.0 0.0 1.2321502247411206E-5 3 6.160751123705603E-6 0.0 0.0 0.0 1.2321502247411206E-5 4 6.160751123705603E-6 0.0 0.0 0.0 1.2321502247411206E-5 5 6.160751123705603E-6 6.160751123705603E-6 0.0 0.0 1.2321502247411206E-5 6 6.160751123705603E-6 6.160751123705603E-6 0.0 0.0 1.848225337111681E-5 7 6.160751123705603E-6 6.160751123705603E-6 0.0 6.160751123705603E-6 2.4643004494822413E-5 8 2.4643004494822413E-5 6.160751123705603E-6 0.0 6.160751123705603E-6 3.080375561852802E-5 9 2.4643004494822413E-5 6.160751123705603E-6 0.0 6.160751123705603E-6 4.312525786593922E-5 10-11 8.008976460817284E-5 6.160751123705603E-6 0.0 2.156262893296961E-5 4.6205633427792025E-5 12-13 1.2321502247411207E-4 6.160751123705603E-6 0.0 3.080375561852802E-5 4.9286008989644826E-5 14-15 2.895553028141633E-4 6.160751123705603E-6 0.0 3.388413118038082E-5 8.625051573187844E-5 16-17 5.236638455149762E-4 6.160751123705603E-6 0.0 4.312525786593922E-5 1.1089352022670085E-4 18-19 6.253162390561188E-4 6.160751123705603E-6 0.0 4.9286008989644826E-5 1.1089352022670085E-4 20-21 6.68441496922058E-4 6.160751123705603E-6 0.0 5.5446760113350426E-5 1.1089352022670085E-4 22-23 7.700938904632004E-4 6.160751123705603E-6 0.0 9.857201797928964E-5 1.2937577359781765E-4 24-25 8.409425283858148E-4 6.160751123705603E-6 0.0 1.2629539803596487E-4 1.6017952921634567E-4 26-27 9.30273419679546E-4 6.160751123705603E-6 0.0 3.172786828708386E-4 1.6017952921634567E-4 28-29 0.0011089352022670086 6.160751123705603E-6 0.0 0.0013646063739007912 1.6017952921634567E-4 30-31 0.001133578206761831 6.160751123705603E-6 0.0 0.006049857603478902 1.6325990477819848E-4 32-33 0.001133578206761831 6.160751123705603E-6 0.0 0.017823053000880308 1.848225337111681E-4 34-35 0.001133578206761831 6.160751123705603E-6 0.0 0.034244535121117595 2.1562628932969612E-4 36-37 0.0011366585823236837 6.160751123705603E-6 0.0 0.05786485492940488 2.341085427008129E-4 38-39 0.0011397389578855365 6.160751123705603E-6 0.0 0.09585512673373547 2.5567117163378256E-4 40-41 0.0011397389578855365 6.160751123705603E-6 0.0 0.1554326704755305 2.7723380056675215E-4 42-43 0.0011397389578855365 6.160751123705603E-6 0.0 0.18759179134127377 2.8031417612860496E-4 44-45 0.0011397389578855365 6.160751123705603E-6 0.0 0.22752578012513347 2.895553028141633E-4 46-47 0.0011428193334473893 6.160751123705603E-6 0.0 0.2675953054337147 2.9571605393786894E-4 48-49 0.001145899709009242 6.160751123705603E-6 0.0 0.3000624638556433 3.0803755618528017E-4 50-51 0.001145899709009242 6.160751123705603E-6 0.0 0.328589821933962 3.0803755618528017E-4 52-53 0.001145899709009242 6.160751123705603E-6 0.0 0.36575763346327794 3.3268056068010257E-4 54-55 0.001145899709009242 6.160751123705603E-6 0.0 0.4395357085452144 3.57323565174925E-4 56-57 0.001145899709009242 6.160751123705603E-6 0.0 0.5143457094403715 3.634843162986306E-4 58-59 0.0011520604601329477 6.160751123705603E-6 0.0 0.5609671935690137 3.696450674223362E-4 60-61 0.0011520604601329477 6.160751123705603E-6 0.0 0.5839098307536934 3.819665696697474E-4 62-63 0.0011520604601329477 6.160751123705603E-6 0.0 0.5984584445323242 4.004488230408642E-4 64-65 0.0011520604601329477 6.160751123705603E-6 0.0 0.6092582412521801 4.004488230408642E-4 66-67 0.0011520604601329477 6.160751123705603E-6 0.0 0.6164447574379827 4.004488230408642E-4 68-69 0.0011520604601329477 6.160751123705603E-6 0.0 0.6232431463029917 4.03529198602717E-4 70-71 0.0011520604601329477 6.160751123705603E-6 0.0 0.6293422899154604 4.127703252882754E-4 72-73 0.0011520604601329477 6.160751123705603E-6 0.0 0.6338365578602035 4.49734832030509E-4 74-75 0.0011520604601329477 6.160751123705603E-6 0.0 0.6375083655299321 4.49734832030509E-4 76-77 0.0011520604601329477 6.160751123705603E-6 0.0 0.640752000996563 4.49734832030509E-4 78-79 0.0011520604601329477 6.160751123705603E-6 0.0 0.6435243390022306 4.49734832030509E-4 80-81 0.0011520604601329477 6.160751123705603E-6 0.0 0.644750328475848 4.712974609634786E-4 82-83 0.0011520604601329477 6.160751123705603E-6 0.0 0.6452678315702394 4.990208410201539E-4 84-85 0.0011520604601329477 6.160751123705603E-6 0.0 0.6456097532576051 4.990208410201539E-4 86-87 0.0011520604601329477 6.160751123705603E-6 0.0 0.6457298879045172 4.990208410201539E-4 88-89 0.0011520604601329477 6.160751123705603E-6 0.0 0.6457576112845739 5.082619677057123E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19940 0.0 52.24132 1 GTATCAA 36130 0.0 42.134808 1 ATCAACG 44175 0.0 33.601215 3 TCAACGC 45820 0.0 32.494236 4 TATCAAC 47350 0.0 31.7797 2 CTTATAC 27415 0.0 31.119228 1 CAACGCA 46870 0.0 30.371204 5 AACGCAG 49195 0.0 29.172468 6 TATACAC 32835 0.0 27.796331 3 ACGCAGA 55460 0.0 25.758158 7 CGCAGAG 56155 0.0 25.447744 8 TTATACA 36545 0.0 24.16674 2 GCAGAGT 64590 0.0 21.848494 9 GTGGTAT 9625 0.0 21.703165 1 ACATCTC 39615 0.0 20.247368 8 ATACACA 48505 0.0 19.992409 4 TACATGG 43195 0.0 19.90054 2 GAGTACT 40115 0.0 19.618279 12-13 TGGTATC 9910 0.0 19.353512 2 TACACAT 44380 0.0 19.287062 5 >>END_MODULE