##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139961_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18861843 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.805029550929884 33.0 31.0 34.0 30.0 34.0 2 31.470451270323903 33.0 31.0 34.0 29.0 34.0 3 31.79979300007958 33.0 31.0 34.0 30.0 34.0 4 32.91255096333906 37.0 35.0 37.0 26.0 37.0 5 34.40490566059743 37.0 35.0 37.0 28.0 37.0 6 35.14917455309113 37.0 35.0 37.0 32.0 37.0 7 35.27651778248817 37.0 35.0 37.0 32.0 37.0 8 35.413213173283225 37.0 35.0 37.0 32.0 37.0 9 37.15025954780771 39.0 37.0 39.0 33.0 39.0 10-11 37.02837137919131 39.0 37.0 39.0 33.0 39.0 12-13 36.919367025799126 39.0 37.0 39.0 32.0 39.0 14-15 38.25556283126734 40.0 38.0 41.0 32.0 41.0 16-17 38.250082931980714 40.0 38.0 41.0 32.0 41.0 18-19 38.189652119360765 40.0 38.0 41.0 32.0 41.0 20-21 38.2645328551951 40.0 38.0 41.0 32.0 41.0 22-23 38.30838855452566 40.0 38.0 41.0 32.0 41.0 24-25 38.184328579860406 40.0 38.0 41.0 32.0 41.0 26-27 38.08531501894936 40.0 38.0 41.0 32.0 41.0 28-29 38.09298304015134 40.0 38.0 41.0 32.0 41.0 30-31 38.03878033615444 40.0 37.0 41.0 32.0 41.0 32-33 37.92827366313335 40.0 37.0 41.0 32.0 41.0 34-35 37.81577266393441 40.0 37.0 41.0 31.0 41.0 36-37 37.77109357833931 40.0 37.0 41.0 31.0 41.0 38-39 37.691235071108764 40.0 37.0 41.0 31.0 41.0 40-41 37.61284234542731 40.0 37.0 41.0 31.0 41.0 42-43 37.59015709169982 40.0 36.5 41.0 31.0 41.0 44-45 37.52237087037936 40.0 36.0 41.0 30.5 41.0 46-47 37.39003079585752 40.0 36.0 41.0 30.0 41.0 48-49 37.56338400108538 40.0 36.5 41.0 31.0 41.0 50-51 37.51685840421839 40.0 36.0 41.0 30.0 41.0 52-53 37.46703645190908 40.0 36.0 41.0 30.0 41.0 54-55 37.338479377613346 39.0 36.0 41.0 30.0 41.0 56-57 37.20030120770063 39.0 35.0 41.0 30.0 41.0 58-59 37.0931433781236 39.0 35.0 41.0 30.5 41.0 60-61 36.8747260401193 39.0 35.0 41.0 30.0 41.0 62-63 36.70207788831923 38.5 35.0 41.0 30.0 41.0 64-65 36.44954361108992 38.0 35.0 40.0 30.0 41.0 66-67 36.23351133675517 37.5 35.0 40.0 30.0 41.0 68-69 35.98345685362736 37.0 34.0 40.0 30.0 41.0 70-71 35.74652906458931 36.5 34.0 39.0 30.0 41.0 72-73 35.44938166384153 36.0 34.0 39.0 30.0 41.0 74-75 35.275330041823565 36.0 34.0 39.0 30.0 40.5 76-77 35.08215347766858 35.5 34.0 38.5 30.0 40.0 78-79 34.82366631646678 35.0 34.0 37.0 30.0 39.0 80-81 34.57291433378012 35.0 34.0 37.0 30.0 39.0 82-83 34.31841671484551 35.0 34.0 36.0 30.0 39.0 84-85 34.1048083553923 35.0 34.0 36.0 29.5 37.0 86-87 33.91531508002194 35.0 34.0 36.0 29.0 37.0 88-89 33.77688444090473 35.0 34.0 35.0 29.0 37.0 90-91 33.64197891924701 35.0 34.0 35.0 29.0 36.0 92-93 33.59994306534717 35.0 34.0 35.0 29.0 36.0 94-95 33.57453780347863 35.0 34.0 35.0 29.0 36.0 96-97 33.58419238766023 35.0 34.0 35.0 29.5 36.0 98-99 33.61743849217328 35.0 34.0 35.0 30.0 35.5 100-101 33.229385196951895 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 11.0 17 160.0 18 965.0 19 3454.0 20 9290.0 21 19984.0 22 35903.0 23 59365.0 24 93612.0 25 145820.0 26 222468.0 27 319348.0 28 362680.0 29 296997.0 30 346438.0 31 427394.0 32 532426.0 33 698727.0 34 953129.0 35 1342485.0 36 2038270.0 37 3530102.0 38 4713295.0 39 2583250.0 40 126267.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.684006488655434 21.050843228840364 14.981738528944389 24.283411753559818 2 13.86389919073017 20.92622496744376 42.642256766227874 22.567619075598202 3 17.057423099734166 27.139150094816717 31.3049724086161 24.498454396833015 4 11.532959759740907 19.03294086596289 39.40325310163167 30.03084627266454 5 12.521471988015556 38.1308576113479 35.994214545135286 13.353455855501261 6 28.20652727550553 39.22781477614221 19.102833876636275 13.462824071715989 7 25.09132475786026 33.453238287564005 23.538750843193572 17.91668611138216 8 23.836771970512153 37.02969334317901 21.454817308438628 17.6787173778702 9 24.931691291132015 17.19120929994104 21.568432742649073 36.30866666627787 10-11 23.5386999061634 27.302230612768604 29.11349952922164 20.045569951846357 12-13 24.667518589201816 24.666720809327472 29.09251635142927 21.573244250041444 14-15 21.838118960486646 25.95439593176185 27.010481381813197 25.197003725938306 16-17 21.259093370533 29.20367485255133 27.519123554261842 22.01810822265383 18-19 21.077074359794096 27.96680750432314 29.63219798265171 21.323920153231057 20-21 22.024324438113922 27.166606376810858 29.476288482240793 21.332780702834427 22-23 21.5858511892847 27.28370592923346 29.449590319009218 21.680852562472623 24-25 21.333002942292733 27.443172249363702 29.764041745460755 21.459783062882806 26-27 21.326746277480144 27.55215425327781 29.631119537266965 21.489979931975075 28-29 20.880032298077257 27.3737785297469 29.801826328776365 21.944362843399478 30-31 21.2484141489905 27.14404317099882 29.88673096897671 21.720811711033967 32-33 21.13243726487373 27.46341742729802 29.769356267104243 21.634789040724005 34-35 21.168478807184712 27.78328806992224 29.873268508771293 21.174964614121755 36-37 21.43489454780944 27.432709986990115 29.42948746990968 21.70290799529076 38-39 21.32625514762258 27.330661488798352 29.723338429586743 21.619744933992326 40-41 21.555257375408786 27.230466180737693 29.68468291540215 21.529593528451368 42-43 21.707851947233152 27.222332675029737 29.56223649756372 21.50757888017339 44-45 21.499317863817712 27.719836446238105 29.13911618867655 21.641729501267637 46-47 21.925188928313478 27.357237323439815 28.493364517597204 22.224209230649507 48-49 21.836009897029363 27.38911599783042 28.65714298017962 22.117731124960592 50-51 21.457476106205444 27.706414651178722 28.642366330636616 22.193742911979218 52-53 21.559654742239847 27.862975196790764 28.734327917711646 21.843042143257748 54-55 21.700211261967837 27.783890334805346 28.410394425655603 22.10550397757121 56-57 21.942186713534365 28.094834382833938 27.98385688832763 21.97912201530407 58-59 21.488889635002252 28.382491899419797 28.538440028001165 21.590178437576785 60-61 21.80113723700419 28.703144639949635 27.895309021176086 21.600409101870085 62-63 21.534929963057206 28.904759333719767 27.83165414176783 21.7286565614552 64-65 21.53011210482747 28.8353303380332 27.844351666541208 21.790205890598124 66-67 21.697669871849662 28.723808046343148 27.71437422222402 21.86414785958317 68-69 21.73780870733301 28.372695867097587 28.004285245394232 21.885210180175175 70-71 21.770445449027534 27.90340687956279 28.145218070491314 22.18092960091836 72-73 21.893649297309498 27.902622264309006 28.2048604095514 21.998868028830092 74-75 21.709679800268276 28.062207574658714 28.113626298865917 22.114486326207086 76-77 21.763845854635605 28.048803930958805 28.037869617010173 22.149480597395417 78-79 21.812636306921245 27.99702221802816 28.014951820745914 22.175389654304677 80-81 21.710892411350088 28.018548974276886 28.085812548281496 22.18474606609153 82-83 21.845636156775377 27.947268112887723 28.194058406388212 22.01303732394869 84-85 22.088109091254076 27.876690235430125 28.02975166736465 22.005449005951146 86-87 21.6287602780717 28.053779056421664 28.170526192594814 22.146934472911827 88-89 21.91451089650924 27.874958388379422 28.14088462753242 22.06964608757892 90-91 21.93552368005864 27.940826092544768 28.181044082328622 21.942606145067966 92-93 21.891260269225317 27.994376581115798 28.08077292484897 22.033590224809917 94-95 21.696473934313413 28.078602024199355 28.116633937666187 22.108290103821037 96-97 21.646322065588027 28.163315244855564 28.197650735730225 21.992711953826188 98-99 21.90921653806027 28.683956612087012 28.25041928483771 21.156407565015005 100-101 22.63456347454075 31.219034568400055 25.435730316745353 20.710671640313844 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6899.0 1 5792.5 2 6645.0 3 8808.0 4 11356.0 5 18303.0 6 24108.5 7 28296.0 8 30805.5 9 29357.0 10 24893.5 11 20354.0 12 21641.0 13 30309.0 14 53348.0 15 85970.0 16 112627.0 17 127588.5 18 129609.0 19 121461.0 20 107977.5 21 94309.5 22 87373.5 23 92771.0 24 109224.0 25 135492.0 26 174930.5 27 219102.5 28 258844.5 29 296302.5 30 332190.0 31 370671.5 32 419792.5 33 473013.5 34 526376.0 35 575921.0 36 625079.5 37 670623.0 38 690539.0 39 697200.0 40 718100.0 41 735076.5 42 742468.0 43 763958.5 44 801791.5 45 843552.5 46 844317.0 47 834920.5 48 817143.5 49 773546.0 50 739156.5 51 707098.0 52 670727.0 53 630790.0 54 587730.0 55 540292.5 56 492517.5 57 437456.0 58 375866.5 59 320442.5 60 266874.0 61 207858.5 62 158040.5 63 120294.0 64 88244.0 65 63923.5 66 46509.0 67 34577.5 68 26250.0 69 19693.0 70 14742.5 71 10773.0 72 7749.0 73 5374.5 74 3839.5 75 2775.0 76 1906.5 77 1237.0 78 847.0 79 600.5 80 431.0 81 317.0 82 239.5 83 158.0 84 104.0 85 80.5 86 71.5 87 60.5 88 39.5 89 24.5 90 18.0 91 12.5 92 9.5 93 5.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.5 100 1.5 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.8272710678378565 3 0.0066006275208631525 4 8.80302630024012 5 3.128008222738361E-4 6 0.07508810247227696 7 0.026312381032966927 8 5.672828471745842E-4 9 2.4387860719655023E-4 10-11 0.30403444668689056 12-13 0.3163211569516298 14-15 9.01290504856816E-5 16-17 1.3254272130247294E-4 18-19 0.5072330418612858 20-21 2.147523233616406E-4 22-23 1.511618258152734E-4 24-25 0.17507234746968964 26-27 0.16563077208098426 28-29 1.4077267144537649E-4 30-31 1.3563924662558145E-4 32-33 9.330002149365923E-5 34-35 3.2616070301426495E-4 36-37 3.1671093015047796E-4 38-39 0.0014708818957136101 40-41 0.0016922423887595775 42-43 0.0010586215079338485 44-45 8.801323719087351E-4 46-47 0.001321144944344818 48-49 0.002403582091602202 50-51 3.3790395281747723E-4 52-53 0.0016084386130817347 54-55 5.248645344823598E-4 56-57 0.010526906875753913 58-59 1.4674410920720088E-4 60-61 0.0024525818361611274 62-63 0.0014082035828534255 64-65 0.0014504117397961338 66-67 0.004647063492396568 68-69 0.0018766828882379196 70-71 0.0023316705882412093 72-73 0.003285296515644382 74-75 6.321802803587972E-4 76-77 3.3713750869709415E-4 78-79 6.946362157372325E-4 80-81 4.009290553385808E-4 82-83 0.0016789769299856566 84-85 2.4395440329566133E-4 86-87 4.830750874442995E-4 88-89 9.010211619374839E-5 90-91 2.455529139518746E-4 92-93 0.0 94-95 0.0 96-97 5.119239895260352E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1837.0 20-21 4580.0 22-23 6437.0 24-25 8431.0 26-27 11811.0 28-29 19260.0 30-31 41007.0 32-33 50813.0 34-35 66822.0 36-37 94789.0 38-39 118508.0 40-41 124902.0 42-43 146892.0 44-45 179911.0 46-47 178896.0 48-49 161950.0 50-51 142365.0 52-53 130592.0 54-55 140223.0 56-57 154047.0 58-59 171668.0 60-61 175957.0 62-63 172270.0 64-65 185169.0 66-67 201002.0 68-69 210474.0 70-71 184918.0 72-73 157132.0 74-75 155351.0 76-77 161442.0 78-79 169488.0 80-81 171819.0 82-83 163818.0 84-85 162528.0 86-87 164186.0 88-89 172378.0 90-91 180232.0 92-93 183258.0 94-95 200989.0 96-97 303114.0 98-99 1502302.0 100-101 1.1928275E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.58807475163418 #Duplication Level Percentage of deduplicated Percentage of total 1 87.86340811420438 69.92879492926637 2 7.392206921235045 11.766630340536043 3 2.253002152962067 5.379363112966131 4 0.9830860872571443 3.129677159996526 5 0.520641891188511 2.0718442877371697 6 0.3132661424033628 1.495934949525295 7 0.18255237054701992 1.017029419922897 8 0.12456927447016565 0.7931382982630704 9 0.08389251851409849 0.6009159631142632 >10 0.2789891130804847 3.279195307067733 >50 0.0033236580428522974 0.176648965048686 >100 9.125218720134685E-4 0.13587584033387454 >500 2.7162271072949784E-5 0.013283786746328276 >1k 1.0850841557612581E-4 0.1533101004891165 >5k 1.3563536121334414E-5 0.058357538986550966 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.6508544260494587E-5 0.0 0.0 0.0 5 0.0 3.7111961964692423E-5 0.0 0.0 0.0 6 0.0 3.7111961964692423E-5 0.0 0.0 0.0 7 0.0 3.7111961964692423E-5 0.0 0.0 0.0 8 0.0 5.3017088520989174E-5 0.0 0.0 0.0 9 0.0 7.422392392938485E-5 0.0 0.0 0.0 10-11 0.0 1.1133588589407726E-4 0.0 1.0603417704197835E-5 0.0 12-13 0.0 1.219393035982751E-4 0.0 2.3857689834445126E-5 0.0 14-15 0.0 1.5640041113691808E-4 0.0 4.771537966889025E-5 0.0 16-17 0.0 1.6435297441506644E-4 0.0 7.68747783554343E-5 0.0 18-19 0.0 1.7760724654531374E-4 0.0 1.537495567108686E-4 0.0 20-21 0.0 1.9616322752765995E-4 0.0 2.703871514570448E-4 0.0 22-23 0.0 2.120683540839567E-4 0.0 4.029298727595177E-4 0.0 24-25 0.0 2.173700629360556E-4 0.0 6.096965179913756E-4 0.0 26-27 0.0 2.200209173621051E-4 0.0 8.03208891092986E-4 0.0 28-29 0.0 2.438786071965502E-4 0.0 0.0017469130667665932 0.0 30-31 2.6508544260494586E-6 2.968956957175394E-4 0.0 0.00548461780749633 0.0 32-33 5.301708852098917E-6 2.995465501435888E-4 0.0 0.014436553204265352 0.0 34-35 5.301708852098917E-6 3.393093665343307E-4 0.0 0.02653240195032903 0.0 36-37 5.301708852098917E-6 3.896756006292704E-4 0.0 0.043868989896692495 0.0 38-39 5.301708852098917E-6 3.923264550553199E-4 0.0 0.07132919089613884 0.0 40-41 5.301708852098917E-6 4.347401258721112E-4 0.0 0.10847296311394386 0.0 42-43 1.0603417704197835E-5 4.692012334107542E-4 0.0 0.1310290834251987 0.0 44-45 1.0603417704197835E-5 5.513777206182874E-4 2.6508544260494586E-6 0.15714530123063797 0.0 46-47 1.0603417704197835E-5 6.41506771103969E-4 5.301708852098917E-6 0.1825139780879313 0.0 48-49 1.0603417704197835E-5 7.236832583115022E-4 5.301708852098917E-6 0.20282482470032223 0.0 50-51 1.0603417704197835E-5 8.085105999450848E-4 5.301708852098917E-6 0.22085593650631064 0.0 52-53 1.0603417704197835E-5 8.270665809274312E-4 5.301708852098917E-6 0.24158031640916533 0.0 54-55 1.0603417704197835E-5 8.297174353534806E-4 5.301708852098917E-6 0.2767518529339895 0.0 56-57 1.0603417704197835E-5 8.456225619097773E-4 5.301708852098917E-6 0.3125516419577875 0.0 58-59 1.0603417704197835E-5 8.66829397318173E-4 5.301708852098917E-6 0.3411729171958435 0.0 60-61 1.0603417704197835E-5 8.906870871526181E-4 5.301708852098917E-6 0.35690573821444704 0.0 62-63 1.0603417704197835E-5 9.224973402652116E-4 5.301708852098917E-6 0.36612540990824705 0.0 64-65 1.0603417704197835E-5 0.0010338332261592888 5.301708852098917E-6 0.3750375824886253 0.0 66-67 1.0603417704197835E-5 0.0010550400615676847 5.301708852098917E-6 0.3806176310554594 0.0 68-69 1.0603417704197835E-5 0.0010815486058281792 5.301708852098917E-6 0.3860439300655827 0.0 70-71 1.0603417704197835E-5 0.0010895011691063276 5.301708852098917E-6 0.39121839790523116 0.0 72-73 1.0603417704197835E-5 0.001116009713366822 5.301708852098917E-6 0.39515756758234066 0.0 74-75 1.0603417704197835E-5 0.0011504708209054651 5.301708852098917E-6 0.39825376555196645 0.0 76-77 1.0603417704197835E-5 0.0011796302195920092 5.301708852098917E-6 0.4010424644081705 0.0 78-79 1.0603417704197835E-5 0.0012061387638525036 5.301708852098917E-6 0.4036827154165158 0.0 80-81 1.0603417704197835E-5 0.0012087896182785532 5.301708852098917E-6 0.4048862033259422 0.0 82-83 1.0603417704197835E-5 0.0012087896182785532 5.301708852098917E-6 0.4052917840531278 0.0 84-85 1.0603417704197835E-5 0.00122469474483485 5.301708852098917E-6 0.40562844256523606 0.0 86-87 1.0603417704197835E-5 0.0012352981625390477 5.301708852098917E-6 0.4057079681980176 0.0 88-89 1.0603417704197835E-5 0.001248552434669295 5.301708852098917E-6 0.40574508015998223 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 28415 0.0 51.938667 1 GTATCAA 51285 0.0 41.054462 1 CTTATAC 27145 0.0 34.86182 1 ATCAACG 62270 0.0 33.173508 3 TCAACGC 64345 0.0 32.16609 4 TATCAAC 65320 0.0 31.926708 2 CAACGCA 65095 0.0 30.277433 5 TATACAC 34415 0.0 29.870298 3 AACGCAG 68020 0.0 29.141289 6 TTATACA 37100 0.0 26.360985 2 ACGCAGA 75830 0.0 26.03422 7 CGCAGAG 76105 0.0 25.950382 8 GCAGAGT 85775 0.0 22.750948 9 ACACATC 41190 0.0 21.565626 6 TACACAT 45360 0.0 20.734913 5 TACATGG 55755 0.0 20.639786 2 GAGTACT 54315 0.0 20.510263 12-13 GTACATG 59545 0.0 19.912663 1 AGAGTAC 80695 0.0 19.48241 10-11 CAGAGTA 85610 0.0 19.279974 10-11 >>END_MODULE