##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139959_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14746781 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.794325012353543 33.0 31.0 34.0 30.0 34.0 2 31.46833346206199 33.0 31.0 34.0 29.0 34.0 3 31.799457047609238 33.0 31.0 34.0 30.0 34.0 4 32.89540103701275 37.0 35.0 37.0 26.0 37.0 5 34.39298888347226 37.0 35.0 37.0 28.0 37.0 6 35.13840288263588 37.0 35.0 37.0 32.0 37.0 7 35.27453964360087 37.0 35.0 37.0 32.0 37.0 8 35.411913623725745 37.0 35.0 37.0 32.0 37.0 9 37.175328703938845 39.0 37.0 39.0 33.0 39.0 10-11 37.0447505798045 39.0 37.0 39.0 33.0 39.0 12-13 36.939439325775574 39.0 37.0 39.0 32.0 39.0 14-15 38.292026680263305 40.0 38.0 41.0 32.0 41.0 16-17 38.28711743939236 40.0 38.0 41.0 32.5 41.0 18-19 38.21413527467452 40.0 38.0 41.0 32.5 41.0 20-21 38.28290568933565 40.0 38.0 41.0 32.5 41.0 22-23 38.328455651850064 40.0 38.0 41.0 32.5 41.0 24-25 38.2066293763887 40.0 38.0 41.0 32.0 41.0 26-27 38.110340935806335 40.0 38.0 41.0 32.0 41.0 28-29 38.12064130148488 40.0 38.0 41.0 32.0 41.0 30-31 38.065066011416434 40.0 37.5 41.0 32.0 41.0 32-33 37.96661625382493 40.0 37.0 41.0 32.0 41.0 34-35 37.865830515395835 40.0 37.0 41.0 31.0 41.0 36-37 37.81916141192802 40.0 37.0 41.0 31.0 41.0 38-39 37.74734198553205 40.0 37.0 41.0 31.0 41.0 40-41 37.66862321392982 40.0 37.0 41.0 31.0 41.0 42-43 37.64423983479095 40.0 37.0 41.0 31.0 41.0 44-45 37.58344792461144 40.0 37.0 41.0 30.5 41.0 46-47 37.45175161666005 40.0 36.0 41.0 30.0 41.0 48-49 37.62664127119559 40.0 37.0 41.0 31.0 41.0 50-51 37.583096589483446 40.0 36.0 41.0 30.5 41.0 52-53 37.52959388719083 40.0 36.0 41.0 30.5 41.0 54-55 37.40119651707286 39.5 36.0 41.0 30.0 41.0 56-57 37.27108563157961 39.0 35.5 41.0 30.0 41.0 58-59 37.17330869192847 39.0 35.0 41.0 30.5 41.0 60-61 36.965266513634916 39.0 35.0 41.0 30.5 41.0 62-63 36.792716914905284 39.0 35.0 41.0 30.0 41.0 64-65 36.540692025681395 38.0 35.0 40.0 30.0 41.0 66-67 36.32965428751299 38.0 35.0 40.0 30.0 41.0 68-69 36.08536542894298 37.0 34.0 40.0 30.0 41.0 70-71 35.8422905664431 37.0 34.0 39.5 30.0 41.0 72-73 35.539247162066964 36.0 34.0 39.0 30.0 41.0 74-75 35.35958243621695 36.0 34.0 39.0 30.0 40.5 76-77 35.160045703344196 35.5 34.0 38.5 30.0 40.0 78-79 34.89789838675984 35.0 34.0 37.0 30.0 39.0 80-81 34.63620996373892 35.0 34.0 37.0 30.0 39.0 82-83 34.37933087809223 35.0 34.0 36.5 30.0 39.0 84-85 34.157584021488574 35.0 34.0 36.0 30.0 37.0 86-87 33.96247232519171 35.0 34.0 36.0 29.5 37.0 88-89 33.81792355394727 35.0 34.0 35.5 29.0 37.0 90-91 33.67564479138962 35.0 34.0 35.0 29.0 36.0 92-93 33.62724361830048 35.0 34.0 35.0 29.0 36.0 94-95 33.59843217615146 35.0 34.0 35.0 29.0 36.0 96-97 33.60223505510944 35.0 34.0 35.0 30.0 36.0 98-99 33.6300613800976 35.0 34.0 35.0 30.0 35.5 100-101 33.24101324125087 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 18.0 17 111.0 18 708.0 19 2546.0 20 6760.0 21 15212.0 22 27430.0 23 45075.0 24 70942.0 25 111339.0 26 169912.0 27 247126.0 28 281572.0 29 229082.0 30 267786.0 31 330168.0 32 411384.0 33 538763.0 34 735561.0 35 1039184.0 36 1582045.0 37 2727497.0 38 3746494.0 39 2058275.0 40 101789.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.83465272861921 20.720583020796198 14.92985486120666 24.514909389377927 2 13.905637098054779 20.990566444990087 42.2846347758416 22.819161681113528 3 17.20918584045471 26.521231132597205 31.244106400239957 25.025476626708134 4 11.795789860539493 18.89283765138215 39.05992709141081 30.251445396667542 5 12.79993772177801 37.799815660802864 35.98058498129212 13.419661636127012 6 28.818134925748783 38.82253032790162 19.04192448173852 13.317410264611082 7 25.401570243073696 33.199776731889635 23.45075529344366 17.947897731593017 8 23.6478187786115 37.3851844196651 21.453340179614518 17.51365662210888 9 24.896141388894936 17.229906750180767 21.430641136669543 36.44331072425475 10-11 23.51706314890587 27.11705755775928 29.379312329100603 19.986566964234246 12-13 24.544513871992894 24.602936369988022 29.336155318673534 21.51639443934555 14-15 21.66521798745569 26.04161142856678 26.905543222154606 25.387627361822922 16-17 21.2554987924297 29.287930728921786 27.53593577382639 21.92063470482212 18-19 21.276939353133486 28.15789801013039 29.430693469977303 21.13446916675882 20-21 21.987761346424836 27.352863431567087 29.334429322038407 21.324945899969666 22-23 21.658293562288826 27.525903258209716 29.224146220638524 21.591656958862938 24-25 21.626018686465454 27.61890783779004 29.307813425758976 21.447260049985527 26-27 21.656712833561137 27.717171348995684 29.21629005148584 21.409825765957343 28-29 21.461400892527426 27.563227712424975 29.334237472728404 21.64113392231919 30-31 21.657917930756476 27.514517691884393 29.39813648218454 21.429427895174587 32-33 21.229892037372885 27.46538632709657 29.579998050797844 21.724723584732704 34-35 21.38961536602062 27.563053175392678 29.32836612602418 21.718965332562522 36-37 21.48128202581763 27.615987024794343 29.3932364381173 21.50949451127073 38-39 21.40875543521593 27.57391498972582 29.373749164817227 21.64358041024102 40-41 21.64435663619986 27.455623882964076 29.319743629700724 21.580275851135344 42-43 21.71258999444835 27.49607582626274 29.141599361342273 21.64973481794664 44-45 21.600101330458084 27.780172685864436 28.92469416160246 21.695031822075027 46-47 21.89825296816582 27.57734652841424 28.483917563742693 22.040482939677247 48-49 21.774576902406807 27.682310872463233 28.49076475313886 22.052347471991098 50-51 21.61638270995053 27.87343905346895 28.518354394665124 21.99182384191539 52-53 21.756252017779502 27.849489951140022 28.648961361062746 21.745296670017726 54-55 21.728125873470834 27.83264543242475 28.420807941457216 22.018420752647195 56-57 21.905465509440024 28.060292173539104 28.150533139031413 21.88370917798946 58-59 21.61777423507999 28.301844851432705 28.481655629370863 21.598725284116444 60-61 21.86890879728947 28.50747029712885 28.012176008090584 21.61144489749109 62-63 21.655105373217044 28.73826352346723 27.96724053908014 21.63939056423559 64-65 21.64892790166453 28.61113855074328 27.993459667952376 21.74647387963982 66-67 21.70734622374492 28.543495127742922 27.951243883924775 21.797914764587375 68-69 21.76892929322806 28.343695572130912 28.049106029738844 21.83826910490218 70-71 21.802399279390507 28.00303465354431 28.173022433470894 22.02154363359428 72-73 21.895550688013387 27.960677591832585 28.1539539992074 21.98981772094663 74-75 21.749709999964885 28.097690587005925 28.125165867830376 22.027433545198814 76-77 21.80991582764914 28.05790671729136 28.10203786549507 22.030139589564428 78-79 21.801930204290418 28.085882460706852 28.06647955397604 22.045707781026692 80-81 21.81036734253073 28.085329720338166 28.059145822511777 22.045157114619325 82-83 21.842969217064397 28.03789326198074 28.158411971749413 21.96072554920545 84-85 21.938870127071056 28.05160675571592 28.07180009772507 21.937723019487958 86-87 21.762233939368024 28.043666305053577 28.19250645961548 22.001593295962927 88-89 21.83178777572751 28.04921938745678 28.11294702402008 22.00604581279563 90-91 21.87210910639718 28.066878603325705 28.139483009207826 21.921529281069287 92-93 21.880503377767894 28.076089573802072 28.118136679893663 21.925270368536374 94-95 21.74251926299062 28.108633321137148 28.168831151297002 21.980016264575227 96-97 21.764213687853797 28.15133223778862 28.16497478389787 21.919479290459716 98-99 22.024616393302036 28.682604702831515 28.217650212497126 21.075128691369322 100-101 22.609258501147462 31.28950725165604 25.45713267134436 20.64410157585214 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5875.0 1 4458.5 2 4197.0 3 5485.5 4 6802.0 5 10467.5 6 13903.5 7 17177.0 8 19669.0 9 19497.5 10 16937.0 11 14167.5 12 15089.5 13 20468.0 14 34254.5 15 53512.5 16 69158.5 17 78384.0 18 80899.0 19 77636.0 20 71870.0 21 66807.5 22 65977.0 23 73220.5 24 88241.0 25 109623.0 26 137747.0 27 169041.0 28 202895.0 29 239028.0 30 273573.0 31 308939.0 32 344414.0 33 378916.0 34 412990.5 35 444638.5 36 477669.5 37 505501.5 38 525063.0 39 542778.5 40 560613.5 41 576997.0 42 588507.0 43 597089.0 44 604961.5 45 616199.0 46 634142.0 47 641958.0 48 630155.5 49 606531.5 50 576401.5 51 544941.5 52 512380.0 53 480467.0 54 447467.5 55 410896.0 56 373618.0 57 334898.5 58 296048.5 59 256475.5 60 213771.0 61 172716.0 62 136153.0 63 105176.5 64 79495.5 65 59374.5 66 44737.5 67 34489.0 68 26626.0 69 19852.5 70 14563.5 71 10550.5 72 7473.0 73 5118.5 74 3494.5 75 2420.5 76 1660.5 77 1119.5 78 798.5 79 591.5 80 437.5 81 323.0 82 255.5 83 198.0 84 140.0 85 95.0 86 66.0 87 48.5 88 34.5 89 24.5 90 15.5 91 11.5 92 8.5 93 5.0 94 4.0 95 3.5 96 3.0 97 2.0 98 0.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.8226486173491012 3 0.006184400514254603 4 8.886712293347273 5 3.5940046848190123E-4 6 0.07410430791641918 7 0.026907567149739325 8 6.035215414130039E-4 9 3.3905704573764265E-4 10-11 0.3049241729432342 12-13 0.3184728924909104 14-15 1.017171137212928E-4 16-17 1.3901338875243352E-4 18-19 0.5057951291200432 20-21 2.3737322786049575E-4 22-23 2.1029526234961473E-4 24-25 0.17839901717847598 26-27 0.1662819646662536 28-29 1.0869225554092739E-4 30-31 1.0541863696082829E-4 32-33 1.1245384408642549E-4 34-35 4.373364664846687E-4 36-37 2.0918415128965974E-4 38-39 0.001537371060327233 40-41 0.001768431950114407 42-43 0.0011759907495241598 44-45 8.755921411631761E-4 46-47 0.001376686272145755 48-49 0.00248393148658396 50-51 2.9224704313642123E-4 52-53 0.0016501810910183187 54-55 4.5407002924320844E-4 56-57 0.01036945493028452 58-59 1.6010625097622925E-4 60-61 0.002626500176866042 62-63 0.001448593163861332 64-65 0.0015008615404689702 66-67 0.004785881888303939 68-69 0.00176838236401658 70-71 0.002410470418540784 72-73 0.003338720869260569 74-75 5.852640521697111E-4 76-77 3.4232189114261665E-4 78-79 6.463476909249326E-4 80-81 4.8257348117277006E-4 82-83 0.0015976966931756781 84-85 2.634091956065216E-4 86-87 4.765953675703129E-4 88-89 1.258837363855654E-4 90-91 2.3711089333987995E-4 92-93 0.0 94-95 0.0 96-97 3.65384429179089E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1311.0 20-21 3278.0 22-23 4469.0 24-25 6056.0 26-27 8331.0 28-29 13311.0 30-31 28939.0 32-33 36151.0 34-35 48347.0 36-37 70100.0 38-39 85306.0 40-41 88469.0 42-43 103448.0 44-45 125303.0 46-47 124811.0 48-49 114637.0 50-51 103559.0 52-53 100577.0 54-55 107185.0 56-57 115184.0 58-59 120214.0 60-61 122336.0 62-63 124075.0 64-65 132659.0 66-67 141462.0 68-69 149354.0 70-71 133756.0 72-73 117521.0 74-75 117510.0 76-77 122022.0 78-79 126372.0 80-81 127592.0 82-83 123930.0 84-85 122985.0 86-87 125427.0 88-89 130071.0 90-91 136392.0 92-93 138085.0 94-95 152719.0 96-97 238906.0 98-99 1199152.0 100-101 9555469.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.81319203844792 #Duplication Level Percentage of deduplicated Percentage of total 1 89.2392923991609 74.79429951226079 2 7.278638850663177 12.200919115382817 3 1.8904799241982924 4.753414707949859 4 0.6931143780492182 2.3236851388819404 5 0.3428043003320181 1.4365761327666604 6 0.18330380494077533 0.9217966202927641 7 0.10818040304477179 0.6346861426631709 8 0.07017981589336374 0.4705595509354732 9 0.046304566869965605 0.3492840199796623 >10 0.14479730757026754 1.8622802886458738 >50 0.0023804049955141763 0.13602548208730408 >100 4.6693456573303085E-4 0.06283322747695065 >500 2.8463446817337658E-5 0.01762713393446385 >1k 2.844626918184879E-5 0.03601292674228891 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.781140914752853E-6 0.0 0.0 0.0 3 0.0 6.781140914752853E-6 0.0 1.3562281829505706E-5 0.0 4 0.0 2.7124563659011413E-5 0.0 2.034342274425856E-5 6.781140914752853E-6 5 0.0 2.7124563659011413E-5 0.0 2.7124563659011413E-5 6.781140914752853E-6 6 0.0 2.7124563659011413E-5 0.0 2.7124563659011413E-5 2.034342274425856E-5 7 6.781140914752853E-6 2.7124563659011413E-5 0.0 3.390570457376427E-5 2.034342274425856E-5 8 6.781140914752853E-6 3.390570457376427E-5 0.0 3.390570457376427E-5 2.034342274425856E-5 9 6.781140914752853E-6 8.137369097703424E-5 0.0 6.781140914752854E-5 2.034342274425856E-5 10-11 3.051513411638784E-5 8.137369097703424E-5 0.0 7.459255006228139E-5 2.034342274425856E-5 12-13 3.390570457376427E-5 8.476426143441066E-5 0.0 9.832654326391638E-5 2.034342274425856E-5 14-15 3.390570457376427E-5 1.4918510012456278E-4 0.0 1.0849825463604565E-4 2.7124563659011413E-5 16-17 3.390570457376427E-5 1.4918510012456278E-4 0.0 1.1527939555079851E-4 3.390570457376427E-5 18-19 4.407741594589355E-5 1.6613795241144492E-4 0.0 1.2884167738030423E-4 3.390570457376427E-5 20-21 5.4249127318022826E-5 1.7970023424095061E-4 0.0 1.6274738195406848E-4 3.390570457376427E-5 22-23 5.4249127318022826E-5 2.2038707972946774E-4 0.0 2.136059388147149E-4 3.390570457376427E-5 24-25 5.763969777539925E-5 2.6107392521798487E-4 0.0 2.9497962979174914E-4 3.390570457376427E-5 26-27 6.442083869015211E-5 2.78026777504867E-4 0.0 4.272118776294298E-4 3.390570457376427E-5 28-29 7.120197960490496E-5 2.8480791841961985E-4 0.0 0.0011799185191669966 3.390570457376427E-5 30-31 8.137369097703424E-5 3.3227590482288983E-4 0.0 0.00414666766937137 3.390570457376427E-5 32-33 8.81548318917871E-5 3.3227590482288983E-4 0.0 0.01133806760946677 3.390570457376427E-5 34-35 1.017171137212928E-4 3.831344616835362E-4 0.0 0.021306344754153467 3.390570457376427E-5 36-37 1.0849825463604565E-4 4.407741594589355E-4 0.0 0.03523141762259845 3.390570457376427E-5 38-39 1.1866996600817494E-4 4.712892935753233E-4 0.0 0.05386260228588192 4.068684548851712E-5 40-41 1.3901338875243352E-4 5.289289913507226E-4 0.0 0.07132404014137052 4.068684548851712E-5 42-43 1.4918510012456278E-4 5.560535550097341E-4 0.0 0.08574752686704984 4.068684548851712E-5 44-45 1.5596624103931563E-4 6.238649641572625E-4 0.0 0.10056771033624219 4.068684548851712E-5 46-47 1.5935681149669204E-4 6.848952323900382E-4 0.0 0.11449278320468717 4.7467986403269976E-5 48-49 1.6274738195406848E-4 6.882858028474147E-4 0.0 0.1261393927257752 5.4249127318022826E-5 50-51 1.6274738195406848E-4 7.967840574834603E-4 0.0 0.13499217218998505 5.4249127318022826E-5 52-53 1.6274738195406848E-4 8.001746279408368E-4 0.0 0.14200726246629689 5.763969777539925E-5 54-55 1.6952852286882133E-4 8.069557688555896E-4 0.0 0.1483883160670793 6.103026823277568E-5 56-57 1.7970023424095061E-4 8.137369097703424E-4 0.0 0.15422687839468152 6.103026823277568E-5 58-59 1.898719456130799E-4 8.137369097703424E-4 0.0 0.15991286505170177 6.103026823277568E-5 60-61 2.3055879110159703E-4 8.205180506850953E-4 0.0 0.1652937003675582 6.103026823277568E-5 62-63 2.3733993201634988E-4 8.272991915998482E-4 0.0 0.1702201992421261 6.103026823277568E-5 64-65 2.8480791841961985E-4 9.357974462358938E-4 0.0 0.17527893036453177 6.103026823277568E-5 66-67 2.9837020024912555E-4 9.561408689801524E-4 0.0 0.18023933494367347 6.103026823277568E-5 68-69 3.187136229933841E-4 9.900465735539167E-4 0.0 0.18524381693876107 6.103026823277568E-5 70-71 3.2549476390813695E-4 0.0010069994258407988 0.0 0.1899736627268012 7.459255006228139E-5 72-73 3.2549476390813695E-4 0.0010137805667555515 0.0 0.1936863373776284 8.137369097703424E-5 74-75 3.2549476390813695E-4 0.001040905130414563 0.0 0.19690737931213598 8.137369097703424E-5 76-77 3.2549476390813695E-4 0.0010849825463604564 0.0 0.19974189621450267 8.137369097703424E-5 78-79 3.2549476390813695E-4 0.0010917636872752093 0.0 0.20199323499820063 8.137369097703424E-5 80-81 3.2549476390813695E-4 0.0010917636872752093 0.0 0.20306465526273157 8.137369097703424E-5 82-83 3.2549476390813695E-4 0.0011019353986473387 0.0 0.2036240993881987 8.137369097703424E-5 84-85 3.2549476390813695E-4 0.0011188882509342208 0.0 0.20400723384988223 8.137369097703424E-5 86-87 3.2888533436551336E-4 0.0011324505327637265 0.0 0.2041530283795494 8.476426143441066E-5 88-89 3.3227590482288983E-4 0.0011866996600817493 0.0 0.20420049636595267 8.81548318917871E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18750 0.0 54.12252 1 GTATCAA 33875 0.0 40.303917 1 CTTATAC 15705 0.0 38.97342 1 ATCAACG 40680 0.0 32.933807 3 TCAACGC 41105 0.0 32.65999 4 TATCAAC 42780 0.0 31.562418 2 CAACGCA 42640 0.0 30.108225 5 TATACAC 22440 0.0 29.987503 3 AACGCAG 44235 0.0 29.24899 6 TTATACA 22815 0.0 27.941385 2 ACGCAGA 50010 0.0 25.79878 7 CGCAGAG 50795 0.0 25.417692 8 ACATCTC 24775 0.0 23.126415 8 GCAGAGT 58980 0.0 21.634686 9 ACACATC 26105 0.0 21.477081 6 TACACAT 29095 0.0 21.169334 5 GTACATG 37820 0.0 20.376122 1 TACATGG 36975 0.0 20.027452 2 GAGTACT 37940 0.0 19.91684 12-13 CATCTCC 28850 0.0 19.367094 9 >>END_MODULE