##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139957_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9763713 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.80728499496042 34.0 31.0 34.0 31.0 34.0 2 32.93935032707332 34.0 31.0 34.0 31.0 34.0 3 33.014378853618496 34.0 31.0 34.0 31.0 34.0 4 36.35823656430704 37.0 37.0 37.0 35.0 37.0 5 36.32747070709678 37.0 37.0 37.0 35.0 37.0 6 36.39295296779002 37.0 37.0 37.0 35.0 37.0 7 36.37683379263606 37.0 37.0 37.0 35.0 37.0 8 36.369300900180086 37.0 37.0 37.0 35.0 37.0 9 38.124785519607144 39.0 39.0 39.0 37.0 39.0 10-11 38.05711433754761 39.0 38.0 39.0 35.0 39.0 12-13 38.03465029133896 39.0 38.0 39.0 35.0 39.0 14-15 39.40274504176843 41.0 39.0 41.0 36.0 41.0 16-17 39.42437083105577 41.0 39.0 41.0 36.5 41.0 18-19 39.47950436478418 41.0 39.5 41.0 36.5 41.0 20-21 39.45177378847001 41.0 39.0 41.0 36.5 41.0 22-23 39.38940405269818 41.0 39.0 41.0 36.0 41.0 24-25 39.262546437228224 41.0 39.0 41.0 36.0 41.0 26-27 39.19315949842239 40.0 39.0 41.0 36.0 41.0 28-29 39.05515901044423 40.5 39.0 41.0 36.0 41.0 30-31 39.01852510569058 40.0 39.0 41.0 35.5 41.0 32-33 38.88938622367125 40.0 38.5 41.0 35.0 41.0 34-35 38.75700100188526 40.0 38.0 41.0 35.0 41.0 36-37 38.81829506874847 40.0 38.0 41.0 35.0 41.0 38-39 38.7831208926751 40.0 38.0 41.0 35.0 41.0 40-41 38.9215660779263 40.0 38.0 41.0 35.0 41.0 42-43 38.89541228358853 40.0 38.0 41.0 35.0 41.0 44-45 38.831515884723714 40.0 38.0 41.0 35.0 41.0 46-47 38.76994849717355 40.0 38.0 41.0 35.0 41.0 48-49 38.677467122917506 40.0 38.0 41.0 35.0 41.0 50-51 38.588314492355295 40.0 38.0 41.0 35.0 41.0 52-53 38.560718464364186 40.0 38.0 41.0 34.5 41.0 54-55 38.43162504686993 40.0 38.0 41.0 34.0 41.0 56-57 38.19616118312205 40.0 37.0 41.0 34.0 41.0 58-59 38.009225150741095 40.0 37.0 41.0 34.0 41.0 60-61 37.710753401988256 39.0 36.0 41.0 33.0 41.0 62-63 37.48254465893996 39.0 36.0 40.5 33.0 41.0 64-65 37.213690681114386 38.5 35.5 40.0 33.0 41.0 66-67 36.80591312673806 38.0 35.0 40.0 32.0 41.0 68-69 36.503287321918606 37.0 35.0 39.5 32.0 41.0 70-71 36.121593886727496 37.0 35.0 39.0 31.5 40.5 72-73 35.75833882640751 36.0 35.0 39.0 31.0 40.0 74-75 35.43884757444992 36.0 34.0 38.0 31.0 40.0 76-77 34.503161471447996 35.0 33.5 37.0 30.5 39.0 78-79 34.750513405026766 35.0 34.0 37.0 31.0 39.0 80-81 34.59424653829729 35.0 34.0 36.0 31.0 39.0 82-83 34.311866940802815 35.0 34.0 36.0 31.0 37.5 84-85 34.10221490695222 35.0 34.0 36.0 31.0 37.0 86-87 33.942032724554906 35.0 34.0 35.0 31.0 37.0 88-89 33.63856658740677 35.0 34.0 35.0 30.0 36.0 90-91 33.56674318632114 35.0 33.0 35.0 30.0 36.0 92-93 33.51486941438193 35.0 33.0 35.0 30.0 36.0 94-95 33.41710559435337 35.0 33.0 35.0 30.0 35.0 96-97 33.395810563984526 34.5 33.0 35.0 30.0 35.0 98-99 33.421618520317466 34.0 33.0 35.0 30.0 35.0 100-101 32.186865803215305 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 2.0 18 2.0 19 10.0 20 66.0 21 283.0 22 1210.0 23 3834.0 24 9207.0 25 18195.0 26 31313.0 27 48493.0 28 68252.0 29 90941.0 30 115562.0 31 145649.0 32 184499.0 33 241576.0 34 342423.0 35 511021.0 36 923651.0 37 2129182.0 38 3197762.0 39 1629787.0 40 70790.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.45026736762972 20.4277574815311 14.236094681222609 22.88588046961657 2 12.505930388910603 23.644747375674875 38.27341899314082 25.575903242273696 3 21.860501796960378 25.809174995980012 32.38440101150075 19.94592219555886 4 10.960782325570916 19.059322736951426 40.509601370790406 29.470293566687257 5 11.764401031984768 39.82144082526007 35.08568976341985 13.328468379335314 6 26.07483221029711 38.16206134758202 17.60397430894609 18.159132133174786 7 23.272557255387554 34.17373109197221 23.129957772199297 19.423753880440938 8 22.803880614655636 30.817667585613705 21.23841027248758 25.140041527243074 9 21.40927837543421 20.320192402628024 24.551143153634918 33.71938606830285 10-11 24.818912181561924 24.862307913458036 27.195471193970523 23.123308711009518 12-13 28.634771725895426 23.059571147713655 27.00728099145494 21.29837613493598 14-15 23.562465132366167 24.909908742690153 28.50450510057088 23.023121024372802 16-17 20.38009502375594 29.816925867756105 28.15154945812021 21.651429650367742 18-19 20.392070147091598 30.547971918876755 27.001938402115915 22.05801953191573 20-21 22.069198326069202 26.763801233651858 25.922978590764185 25.24402184951476 22-23 21.185987541480852 26.934733818475475 27.930079494683667 23.94919914536 24-25 24.64205514480832 27.06732494756415 26.617097915350342 21.673521992277188 26-27 22.63346639982152 25.684239222210216 31.558590204657516 20.123704173310745 28-29 20.71195168814062 29.408122677688436 28.364636299755485 21.515289334415456 30-31 21.558141692671995 27.316684205697616 27.789741629152026 23.335432472478363 32-33 22.844143849861464 25.862612713176837 29.052612668787436 22.24063076817426 34-35 23.56501912867245 26.861528762243243 28.52794191848993 21.04551019059438 36-37 22.622764551561165 25.752276423535463 30.79698275725773 20.827976267645642 38-39 21.77047623456572 27.27948945418836 29.434802281279293 21.515232029966626 40-41 21.17778899616058 28.115573531181997 29.474296036797966 21.23234143585946 42-43 21.402395093992702 27.268721278744003 26.70403713497337 24.624846492289922 44-45 21.3587810201442 26.25352645055109 27.988549165801125 24.39914336350358 46-47 24.833072891513304 26.36578569196848 27.51792258014463 21.28321883637359 48-49 22.56003901121505 25.94193505433432 28.63758662192433 22.8604393125263 50-51 19.659350964210976 27.070368538826685 31.174789628274453 22.095490868687886 52-53 21.204091251092574 28.483259738477805 28.178473467315946 22.134175543113674 54-55 20.848459605438688 26.18606657801159 28.61770452967146 24.34776928687826 56-57 23.420012030023578 26.760317017453595 26.06741606277388 23.752254889748947 58-59 23.456054240492374 28.084235156127296 27.842062654569887 20.61764794881044 60-61 23.37990638797113 28.717186133476574 28.028210577850682 19.87469690070162 62-63 20.71170231079803 31.07622606457385 27.480761430580745 20.731310194047374 64-65 20.8030401242955 31.02891906684702 26.22525706107221 21.942783747785274 66-67 21.47680316414995 29.09539028867711 25.782741908708346 23.6450646384646 68-69 21.664888805405752 27.51845828616811 27.783710572754728 23.03294233567141 70-71 23.58370086634025 26.789368931817563 26.71466246889409 22.91226773294809 72-73 21.8187863313165 26.46917448734973 29.731320436189534 21.98071874514423 74-75 21.571399950684256 28.658797521443542 27.27395941578456 22.49584311208764 76-77 21.408944323804178 27.486992365576135 27.45543372937862 23.648629581241064 78-79 22.384648716045007 26.3797795606799 28.200881631683707 23.034690091591386 80-81 23.270921852879237 26.962327424293253 26.94691177548275 22.819838947344756 82-83 21.79484519947165 26.73603032996627 29.42409719983895 22.04502727072313 84-85 22.318551054145136 27.055345483852143 27.95798847679396 22.66811498520876 86-87 21.29439594665026 28.124787068272468 28.66944535465203 21.911371630425243 88-89 21.824950920830183 26.85658266359984 26.773766207047245 24.544700208522734 90-91 21.187831245676186 27.092084447560094 27.70593032355862 24.014153983205098 92-93 22.688219945268248 26.701538421023933 28.483417994628784 22.126823639079028 94-95 21.67424973025205 25.885528890338392 29.194292786057897 23.245928593351657 96-97 20.752773235570313 26.702366900132464 30.1260033439294 22.41885652036782 98-99 21.702213129787694 26.481572025141766 29.162241334356153 22.65397351071439 100-101 27.202076515219993 27.35087411126479 34.599974646140275 10.847074727374949 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2433.0 1 2349.5 2 3670.0 3 5780.5 4 8851.5 5 13291.0 6 16150.0 7 18226.0 8 19245.0 9 18318.0 10 16221.0 11 14685.0 12 16028.0 13 21036.0 14 32536.5 15 47151.0 16 57373.0 17 61249.0 18 60010.0 19 55675.5 20 50052.5 21 44307.0 22 40494.5 23 40846.5 24 45328.0 25 53635.0 26 65054.5 27 78095.5 28 91950.0 29 107151.0 30 122022.5 31 137096.0 32 151907.5 33 165738.5 34 180140.0 35 193084.5 36 207244.5 37 221556.0 38 233645.5 39 245454.0 40 259589.0 41 279588.5 42 310977.5 43 372119.5 44 477517.5 45 659779.0 46 903679.5 47 1130067.5 48 1142211.5 49 890612.5 50 620973.0 51 441699.5 52 336697.5 53 281232.0 54 239157.5 55 206839.5 56 184536.0 57 162825.0 58 140368.0 59 120881.0 60 99664.5 61 79834.0 62 63346.5 63 48380.0 64 35864.0 65 26735.0 66 20624.0 67 15946.5 68 12063.0 69 8869.0 70 6354.5 71 4538.0 72 3261.5 73 2298.5 74 1624.0 75 1054.5 76 632.0 77 399.0 78 227.0 79 151.5 80 105.0 81 69.0 82 52.0 83 38.5 84 28.5 85 18.0 86 11.0 87 8.0 88 6.5 89 4.5 90 2.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.5 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.072601580976417E-5 2 0.004516724324035334 3 3.072601580976417E-5 4 3.072601580976417E-5 5 3.072601580976417E-5 6 3.072601580976417E-5 7 3.072601580976417E-5 8 2.0484010539842784E-5 9 2.1508211066834925E-4 10-11 8.193604215937113E-4 12-13 1.5363007904882087E-5 14-15 2.0484010539842784E-5 16-17 0.0015823898142028551 18-19 1.0242005269921392E-5 20-21 0.0 22-23 7.945355637193942E-4 24-25 0.0027035463910861975 26-27 0.007225620911676157 28-29 0.3666989924212648 30-31 0.3374934052357766 32-33 0.3362614752409812 34-35 0.18727430964193603 36-37 0.04701887381632382 38-39 0.04579998078961483 40-41 0.025886135098715214 42-43 0.025644388356971182 44-45 0.014282177798645079 46-47 0.01000801141035553 48-49 0.009788958268731924 50-51 0.008139765812676211 52-53 0.007165235750655786 54-55 9.381298689887071E-4 56-57 0.004603505895179827 58-59 0.002983839298220209 60-61 0.006085856804179996 62-63 0.0017171325943753431 64-65 1.3255677785529193E-4 66-67 7.478375085767614E-4 68-69 0.001581760717170309 70-71 0.00404182829790567 72-73 0.002076274452542066 74-75 0.0014791752421564669 76-77 5.797591010129649E-4 78-79 1.5699561768141735E-4 80-81 0.001189735256169343 82-83 0.0013457663306513674 84-85 1.5275470969502064E-5 86-87 0.0037164883889140446 88-89 0.001581943551757178 90-91 0.004333906171013635 92-93 0.012954529937496715 94-95 0.0013848571753518272 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1119.0 20-21 6942.0 22-23 7751.0 24-25 9096.0 26-27 55405.0 28-29 25010.0 30-31 38719.0 32-33 55644.0 34-35 53158.0 36-37 76151.0 38-39 87450.0 40-41 88685.0 42-43 107400.0 44-45 126395.0 46-47 107996.0 48-49 97032.0 50-51 116108.0 52-53 87585.0 54-55 130987.0 56-57 127085.0 58-59 127120.0 60-61 134352.0 62-63 138342.0 64-65 153414.0 66-67 172907.0 68-69 146895.0 70-71 94125.0 72-73 101572.0 74-75 106526.0 76-77 130481.0 78-79 167422.0 80-81 124863.0 82-83 160440.0 84-85 192310.0 86-87 148967.0 88-89 141173.0 90-91 155310.0 92-93 140210.0 94-95 182867.0 96-97 180990.0 98-99 1306390.0 100-101 4151319.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.58136313468249 #Duplication Level Percentage of deduplicated Percentage of total 1 88.02637375874683 73.57364310559105 2 8.29266124750481 13.862238621612175 3 2.1118607269758822 5.2953659493373735 4 0.7855637708847363 2.626339631990707 5 0.3497594944903887 1.4616687659402077 6 0.16913492634540106 0.8481916618579647 7 0.09280297974456433 0.5429619685007712 8 0.05053794449931518 0.33792242330221534 9 0.032450673158980335 0.2441044347539067 >10 0.08735535354463107 1.0674123816063907 >50 0.0011376880536173133 0.06505575538220748 >100 3.2210701161196266E-4 0.0532848983126466 >500 3.93290391903959E-5 0.02181040181236307 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0242005269921392E-5 0.0 2 0.0 0.0 0.0 1.0242005269921392E-5 0.0 3 0.0 0.0 0.0 1.0242005269921392E-5 0.0 4 0.0 2.0484010539842784E-5 0.0 1.0242005269921392E-5 0.0 5 0.0 2.0484010539842784E-5 0.0 1.0242005269921392E-5 0.0 6 0.0 2.0484010539842784E-5 0.0 1.0242005269921392E-5 0.0 7 0.0 2.0484010539842784E-5 0.0 3.072601580976417E-5 0.0 8 0.0 2.0484010539842784E-5 0.0 3.072601580976417E-5 0.0 9 0.0 8.193604215937114E-5 0.0 5.121002634960696E-5 0.0 10-11 0.0 8.193604215937114E-5 0.0 6.145203161952835E-5 0.0 12-13 0.0 8.193604215937114E-5 0.0 7.681503952441044E-5 0.0 14-15 0.0 1.1266205796913531E-4 0.0 9.729905006425322E-5 0.0 16-17 0.0 1.1266205796913531E-4 0.0 1.4338807377889948E-4 0.0 18-19 0.0 1.1266205796913531E-4 0.0 2.1508211066834923E-4 0.0 20-21 0.0 1.1266205796913531E-4 0.0 3.3286517127244523E-4 0.0 22-23 0.0 1.2802506587401738E-4 0.0 5.121002634960695E-4 0.0 24-25 0.0 1.4850907641386017E-4 0.0 7.066983636245759E-4 0.0 26-27 0.0 1.5363007904882088E-4 0.0 9.473854874677287E-4 0.0 28-29 0.0 1.5363007904882088E-4 0.0 0.0017104148800768724 0.0 30-31 0.0 2.0484010539842783E-4 0.0 0.0029855445361820854 0.0 32-33 0.0 2.0484010539842783E-4 0.0 0.006073509125063385 0.0 34-35 0.0 2.3044511857323133E-4 0.0 0.009760631022235086 0.0 36-37 0.0 2.560501317480348E-4 0.0 0.013498962945756395 0.0 38-39 0.0 2.714131396529169E-4 0.0 0.019152549854753002 0.0 40-41 0.0 3.0726015809764176E-4 0.0 0.02474980573476504 0.0 42-43 0.0 3.1238116073260244E-4 0.0 0.030306093593697396 0.0 44-45 0.0 3.379861739074059E-4 0.0 0.037214326148259376 0.0 46-47 0.0 3.584701844472487E-4 0.0 0.04434276181612466 0.0 48-49 0.0 3.584701844472487E-4 0.0 0.050421391943823016 0.0 50-51 0.0 4.1480121343181634E-4 0.0 0.05680216122698404 0.0 52-53 0.0 4.1992221606677703E-4 0.0 0.06253768417814001 0.0 54-55 0.0 4.2504321870173777E-4 0.0 0.06906696253771491 0.0 56-57 5.121002634960696E-6 4.3016422133669845E-4 0.0 0.07628757625300948 0.0 58-59 1.0242005269921392E-5 4.404062266066198E-4 0.0 0.08253519946766152 0.0 60-61 1.0242005269921392E-5 4.557692345115019E-4 0.0 0.0882195123924679 0.0 62-63 1.0242005269921392E-5 4.762532450513447E-4 0.0 0.09364777518552625 0.0 64-65 1.0242005269921392E-5 6.247623214652049E-4 0.0 0.09904019096013986 0.0 66-67 1.0242005269921392E-5 6.350043267351263E-4 0.0 0.10455551079799252 0.0 68-69 1.0242005269921392E-5 6.759723478148118E-4 0.0 0.11010667765428991 0.0 70-71 1.0242005269921392E-5 6.913353557196939E-4 0.0 0.11499723517067739 0.0 72-73 1.0242005269921392E-5 6.964563583546547E-4 0.0 0.11863826804413444 0.0 74-75 1.0242005269921392E-5 7.169403688944974E-4 0.0 0.12174671664355557 0.0 76-77 1.0242005269921392E-5 7.681503952441044E-4 0.0 0.12441988001900507 0.0 78-79 1.0242005269921392E-5 7.783924005140257E-4 0.0 0.1274771185920766 0.0 80-81 1.0242005269921392E-5 7.783924005140257E-4 0.0 0.12868567521392732 0.0 82-83 1.0242005269921392E-5 7.783924005140257E-4 0.0 0.12904926640100955 0.0 84-85 1.0242005269921392E-5 7.783924005140257E-4 0.0 0.12927971151958276 0.0 86-87 1.0242005269921392E-5 7.886344057839471E-4 0.0 0.12939749458018684 0.0 88-89 1.0242005269921392E-5 8.500864374034755E-4 0.0 0.12943846260126654 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 18710 0.0 56.696712 1 TTATACA 21340 0.0 49.78384 2 TATACAC 22465 0.0 48.26319 3 TACACAT 32625 0.0 33.307037 5 ATACACA 35465 0.0 31.076921 4 ACACATC 36150 0.0 29.48691 6 ACATCTC 38320 0.0 27.765198 8 CACATCT 38915 0.0 27.156633 7 CATCTCC 42195 0.0 24.99848 9 TACATGG 20885 0.0 18.251667 2 GTACATG 21280 0.0 18.137259 1 ACATGGG 21015 0.0 17.475447 3 AGAGTAC 34900 0.0 17.129951 10-11 CATGGGG 15445 0.0 17.002556 4 ATCTCCG 37200 0.0 16.889004 7 CCGTCTT 40055 0.0 16.823391 46-47 GAGTACT 24895 0.0 16.797918 12-13 TGCCGTC 39915 0.0 16.700378 44-45 TATGCCG 39530 0.0 16.655449 42-43 CGTATGC 39875 0.0 16.361954 40-41 >>END_MODULE