##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139955_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8223299 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.664361590159864 34.0 31.0 34.0 31.0 34.0 2 32.822716041335724 34.0 31.0 34.0 31.0 34.0 3 32.8701012817362 34.0 31.0 34.0 31.0 34.0 4 36.33217726851474 37.0 37.0 37.0 35.0 37.0 5 36.26770691422019 37.0 37.0 37.0 35.0 37.0 6 36.30244808075202 37.0 37.0 37.0 35.0 37.0 7 36.25891786252695 37.0 37.0 37.0 35.0 37.0 8 36.23946654499611 37.0 37.0 37.0 35.0 37.0 9 37.921923184357034 39.0 38.0 39.0 35.0 39.0 10-11 37.89518476708679 39.0 38.0 39.0 35.0 39.0 12-13 37.87065975589602 39.0 38.0 39.0 35.0 39.0 14-15 39.29510601523792 41.0 39.0 41.0 36.0 41.0 16-17 39.279734325603386 41.0 39.0 41.0 36.0 41.0 18-19 39.30285710151121 41.0 39.0 41.0 36.0 41.0 20-21 39.22126260018594 41.0 39.0 41.0 36.0 41.0 22-23 39.218303509394204 40.0 39.0 41.0 36.0 41.0 24-25 39.130105956715326 40.0 39.0 41.0 36.0 41.0 26-27 38.99526998247345 40.0 39.0 41.0 35.0 41.0 28-29 38.871199782843405 40.0 39.0 41.0 35.0 41.0 30-31 38.761356565560206 40.0 38.0 41.0 35.0 41.0 32-33 38.67042104020443 40.0 38.0 41.0 35.0 41.0 34-35 38.527602705779316 40.0 38.0 41.0 34.5 41.0 36-37 38.671057440938704 40.0 38.0 41.0 35.0 41.0 38-39 38.73331147444428 40.0 38.0 41.0 35.0 41.0 40-41 38.71651132493673 40.0 38.0 41.0 35.0 41.0 42-43 38.68037899028316 40.0 38.0 41.0 35.0 41.0 44-45 38.60859562904682 40.0 38.0 41.0 34.5 41.0 46-47 38.54388945708473 40.0 38.0 41.0 34.0 41.0 48-49 38.45895771558966 40.0 38.0 41.0 34.0 41.0 50-51 38.36588298103669 40.0 38.0 41.0 34.0 41.0 52-53 38.25755565756684 40.0 38.0 41.0 34.0 41.0 54-55 38.11878020001549 40.0 37.0 41.0 33.5 41.0 56-57 37.97409433446223 40.0 37.0 41.0 33.0 41.0 58-59 37.790196638798676 39.5 36.5 41.0 33.0 41.0 60-61 37.561396218201395 39.0 36.0 41.0 33.0 41.0 62-63 37.362966062498764 39.0 36.0 40.0 33.0 41.0 64-65 37.127289127234945 38.5 35.0 40.0 32.0 41.0 66-67 36.84571876258903 38.0 35.0 40.0 32.0 41.0 68-69 36.489961974858254 37.5 35.0 40.0 31.5 41.0 70-71 36.2057208219304 37.0 35.0 39.5 31.0 41.0 72-73 35.8733759760311 36.5 35.0 39.0 31.0 40.5 74-75 35.53740224884964 36.0 34.0 39.0 31.0 40.0 76-77 34.50402974365332 35.0 33.5 37.0 29.5 39.0 78-79 34.79129530040497 35.0 34.0 37.0 30.5 39.0 80-81 34.617920130442045 35.0 34.0 37.0 31.0 39.0 82-83 34.33601620028671 35.0 34.0 36.0 30.0 38.5 84-85 34.064072335551 35.0 34.0 36.0 30.0 37.0 86-87 33.83373985501204 35.0 34.0 35.5 30.0 37.0 88-89 33.64356026750309 35.0 33.0 35.0 30.0 36.5 90-91 33.452981864894156 35.0 33.0 35.0 30.0 36.0 92-93 33.31627636013444 34.5 33.0 35.0 29.0 36.0 94-95 33.225127416107966 34.0 33.0 35.0 29.0 35.5 96-97 33.205120674539366 34.0 33.0 35.0 29.5 35.0 98-99 33.214924336770736 34.0 33.0 35.0 30.0 35.0 100-101 32.21550378378754 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 0.0 18 2.0 19 9.0 20 36.0 21 209.0 22 900.0 23 3057.0 24 8122.0 25 16628.0 26 29775.0 27 47619.0 28 69342.0 29 93596.0 30 121809.0 31 153762.0 32 196210.0 33 256144.0 34 359046.0 35 526054.0 36 913912.0 37 1895563.0 38 2501783.0 39 992468.0 40 37250.0 41 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.45580709153346 21.491143639553904 15.729757607013925 24.32329166189871 2 13.48697012151815 21.744682972865164 41.5358327739023 23.23251413171439 3 16.82780840147002 26.542376727393712 31.374829007190424 25.254985863945844 4 11.808110542523274 19.066026680053024 39.28244352599693 29.843419251426766 5 12.915862599669548 37.9042279746851 35.935358789702285 13.24455063594307 6 29.22813581264648 38.72411789964101 18.91464727234167 13.133099015370838 7 25.846597575985015 33.026720784444294 23.265601798013183 17.861079841557505 8 24.14520011980593 36.91429680472521 21.318110894423274 17.622392181045587 9 25.038004820206588 17.136771993819025 21.542619330757642 36.28260385521674 10-11 23.617442759788112 27.246577991156773 29.19499491684543 19.940984332209688 12-13 24.57598829861349 24.68449706133755 29.252894732393898 21.486619907655065 14-15 21.694534934915872 26.170586136865857 27.006211601592877 25.128667326625393 16-17 21.264531600521327 29.38147573782483 27.62811020105512 21.725882460598726 18-19 21.275263127365307 28.41719606693129 29.476922826228257 20.830617979475146 20-21 22.087842336158058 27.521745456774227 29.39477549633563 20.995636710732086 22-23 21.703872506616843 27.514490164809185 29.290336900322444 21.491300428251527 24-25 21.552345046553757 27.6512274911501 29.351658268974546 21.4447691933216 26-27 21.573107613599163 27.813276185399772 29.194957692761708 21.418658508239353 28-29 21.400067585730007 27.7948268704937 29.35260833409969 21.452497209676604 30-31 21.734548692735302 27.615065676600477 29.16379758642183 21.486588044242396 32-33 21.584669925795538 27.790201758327804 29.16433353476081 21.460794781115847 34-35 21.729993877483082 27.87900675573487 29.0924507410808 21.298548625701244 36-37 21.600946869409025 27.787050972202575 29.079411218581306 21.53259093980709 38-39 21.46442335629963 27.85618226044711 29.183230146143877 21.49616423710938 40-41 21.731969699942212 27.768246477157614 29.028400033674455 21.471383789225715 42-43 21.710716425163927 27.83656353790636 28.81218380652129 21.64053623040842 44-45 21.765833906045067 27.964676902472856 28.613150216623495 21.656338974858585 46-47 21.85285625026944 27.915621954631746 28.322768384937152 21.908753410161662 48-49 21.821059225088838 28.02239613723169 28.296383668084264 21.860160969595206 50-51 21.80001322386553 28.122756176109636 28.20966600063539 21.867564599389443 52-53 21.922444911032173 28.059530394194326 28.19940280494254 21.81862188983096 54-55 21.888870530069816 28.051533779075584 28.13199074061663 21.927604950237974 56-57 21.937652438492197 28.15479460906812 28.037431749943664 21.87012120249602 58-59 21.82251062221658 28.240150282616316 28.157000699064554 21.78033839610255 60-61 21.999776810474494 28.270084481517216 28.00382927928115 21.72630942872714 62-63 21.889513119725382 28.357927986338183 27.95440594716294 21.7981529467735 64-65 21.853913297149884 28.30695880862544 27.979851853704634 21.859276040520044 66-67 21.934117058385173 28.262452015049032 27.87206399721723 21.931366929348567 68-69 21.956114901718486 28.172285717904572 27.92934093449682 21.94225844588012 70-71 21.92682533709995 27.979574973749067 28.008675168085574 22.084924521065414 72-73 21.95236113267639 27.999296635318654 28.00651767696906 22.04182455503589 74-75 21.858102209202098 28.08998098361723 27.962233871731694 22.08968293544898 76-77 21.961470467896095 28.04128303468108 27.87644575019106 22.120800747231762 78-79 21.92638510779991 28.091423697646512 27.87683501084488 22.1053561837087 80-81 21.950612062205582 28.050641616867345 27.89841646809438 22.100329852832697 82-83 21.967520933136036 28.003083355691206 27.956861083054534 22.07253462811822 84-85 22.053961783287427 27.991391839183024 27.92076881067418 22.033877566855374 86-87 21.936656932360346 27.97505868031279 27.983458817610547 22.10482556971631 88-89 21.99230277373668 27.941334068421973 27.966642149304406 22.09972100853694 90-91 22.040006725532844 27.932965251748325 27.997779987183797 22.029248035535034 92-93 22.023878687921815 27.902669024823602 28.01904482116353 22.054407466091057 94-95 21.8864457366491 27.8881062798508 28.07313732841676 22.15231065508334 96-97 21.870148357392292 27.951292996245066 28.119866787719722 22.058691858642927 98-99 22.09638261469236 28.513110362565268 28.166585841191555 21.22392118155082 100-101 22.580606914011575 31.269268242924447 25.385214297772585 20.764910545291393 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1711.0 1 1504.5 2 1901.5 3 2683.5 4 3609.0 5 5382.0 6 6961.5 7 8671.5 8 10209.5 9 10613.0 10 9869.0 11 9077.5 12 10185.5 13 14028.0 14 22995.5 15 35002.5 16 44323.5 17 49182.5 18 49546.0 19 46510.0 20 42425.5 21 38563.0 22 36909.5 23 39704.5 24 46726.5 25 58086.5 26 73403.5 27 90577.5 28 109542.5 29 130179.5 30 149283.0 31 167618.0 32 186890.0 33 206438.5 34 226127.0 35 244710.5 36 263406.0 37 279265.0 38 291080.5 39 302144.5 40 314145.5 41 324131.0 42 329968.0 43 334349.0 44 338205.5 45 340784.5 46 341380.0 47 340710.0 48 339601.5 49 332141.5 50 319732.0 51 305913.0 52 287826.0 53 268366.5 54 248744.0 55 227310.0 56 205127.5 57 182922.0 58 160766.5 59 138492.5 60 115592.5 61 94057.0 62 74163.5 63 56851.0 64 42421.0 65 31581.0 66 23925.5 67 18293.0 68 13873.5 69 10009.0 70 6997.5 71 4925.5 72 3445.0 73 2333.0 74 1573.0 75 1029.0 76 639.5 77 391.0 78 252.0 79 163.5 80 103.5 81 65.0 82 47.0 83 34.0 84 27.0 85 23.0 86 17.0 87 11.5 88 7.0 89 4.0 90 2.5 91 2.5 92 2.5 93 2.0 94 1.5 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008013815379934501 3 0.0 4 2.4321139241075877E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 7.174736076117383E-4 12-13 0.0 14-15 6.992327531809314E-4 16-17 6.870721835603934E-4 18-19 0.0 20-21 4.925161861492288E-4 22-23 0.0012709042465471538 24-25 0.004543196216995458 26-27 0.016900567355331325 28-29 0.3215581262161753 30-31 0.30897941808612245 32-33 0.3177097892921187 34-35 0.1841755518917891 36-37 0.04569923857735525 38-39 0.035772093989510555 40-41 0.03188867735969696 42-43 0.027833205845135597 44-45 0.015498575584627604 46-47 0.008468934152894226 48-49 0.006408766629340883 50-51 0.0029414172251327844 52-53 0.0019417326931546715 54-55 0.0017915329146769372 56-57 7.048177255729608E-4 58-59 0.0030202712641700506 60-61 0.0030841486201044076 62-63 5.865895514916063E-4 64-65 2.4468731170546715E-4 66-67 0.007378854096875576 68-69 0.006560968177435709 70-71 0.008700668918040397 72-73 0.00908711926907439 74-75 0.00704208237573567 76-77 0.004302162682840121 78-79 3.7636837952639975E-4 80-81 5.555631498763908E-4 82-83 6.203302150662701E-4 84-85 0.0 86-87 0.001696587815045989 88-89 0.0014034422930843625 90-91 0.0011044333654417085 92-93 0.01135989356304275 94-95 1.5098714201445296E-4 96-97 4.852904030344885E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 138.0 20-21 452.0 22-23 1037.0 24-25 2302.0 26-27 3588.0 28-29 5952.0 30-31 13847.0 32-33 18460.0 34-35 27620.0 36-37 37561.0 38-39 44709.0 40-41 47586.0 42-43 57321.0 44-45 69148.0 46-47 68573.0 48-49 59949.0 50-51 53119.0 52-53 51364.0 54-55 55222.0 56-57 58133.0 58-59 58915.0 60-61 58160.0 62-63 58605.0 64-65 63166.0 66-67 67496.0 68-69 64694.0 70-71 62871.0 72-73 61555.0 74-75 62944.0 76-77 63885.0 78-79 67681.0 80-81 69470.0 82-83 68836.0 84-85 69775.0 86-87 74416.0 88-89 79640.0 90-91 86826.0 92-93 90925.0 94-95 104069.0 96-97 159500.0 98-99 713808.0 100-101 5339981.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.67212058499304 #Duplication Level Percentage of deduplicated Percentage of total 1 90.99537745977231 79.77757705330116 2 6.611410266707743 11.592727162793244 3 1.4334671743207799 3.7702532088504195 4 0.4756960759454129 1.66821134928377 5 0.20310624723719148 0.890337769967223 6 0.0946517700532364 0.49789928386142246 7 0.05723279351204122 0.35124042619425794 8 0.036489341464956554 0.2559278355986126 9 0.0205481613071407 0.1621350788327575 >10 0.07086849721466823 0.9305462065133715 >50 8.750144684511532E-4 0.05032799588528847 >100 2.5737061897542E-4 0.04026604375996579 >500 1.982737707383993E-5 0.012550585158527148 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2160569620537937E-5 0.0 2 0.0 0.0 0.0 3.6481708861613815E-5 0.0 3 0.0 1.2160569620537937E-5 0.0 3.6481708861613815E-5 0.0 4 0.0 8.512398734376556E-5 0.0 4.8642278482151747E-5 0.0 5 0.0 8.512398734376556E-5 0.0 4.8642278482151747E-5 0.0 6 1.2160569620537937E-5 8.512398734376556E-5 0.0 6.0802848102689685E-5 2.4321139241075873E-5 7 1.2160569620537937E-5 8.512398734376556E-5 0.0 7.296341772322763E-5 2.4321139241075873E-5 8 2.4321139241075873E-5 1.0944512658484144E-4 0.0 7.296341772322763E-5 2.4321139241075873E-5 9 2.4321139241075873E-5 1.8240854430806905E-4 0.0 9.728455696430349E-5 4.8642278482151747E-5 10-11 2.4321139241075873E-5 1.8240854430806905E-4 0.0 1.155254113951104E-4 5.472256329242072E-5 12-13 4.8642278482151747E-5 1.8240854430806905E-4 0.0 1.337662658259173E-4 6.0802848102689685E-5 14-15 5.472256329242072E-5 2.4321139241075874E-4 0.0 1.337662658259173E-4 6.0802848102689685E-5 16-17 1.0944512658484144E-4 2.4929167722102775E-4 0.0 1.6416768987726214E-4 6.0802848102689685E-5 18-19 1.0944512658484144E-4 2.7361281646210356E-4 0.0 1.88488829118338E-4 6.0802848102689685E-5 20-21 1.0944512658484144E-4 2.7969310127237256E-4 0.0 1.9456911392860699E-4 6.688313291295866E-5 22-23 1.155254113951104E-4 3.283353797545243E-4 0.0 2.0064939873887597E-4 7.90437025334966E-5 24-25 1.520071202567242E-4 3.526565189956002E-4 0.0 2.0672968354914495E-4 8.512398734376556E-5 26-27 1.8240854430806905E-4 3.708973734264071E-4 0.0 2.9185367089291047E-4 9.728455696430349E-5 28-29 1.8240854430806905E-4 3.83057943046945E-4 0.0 5.107439240625933E-4 9.728455696430349E-5 30-31 1.9456911392860699E-4 4.134593670982899E-4 0.0 0.0010032469936943798 9.728455696430349E-5 32-33 2.0064939873887597E-4 4.3170022152909675E-4 0.0 0.002188902531696829 9.728455696430349E-5 34-35 2.371311076004898E-4 4.8034250001124853E-4 0.0 0.0038305794304694506 1.2160569620537937E-4 36-37 2.675325316518346E-4 5.107439240625934E-4 0.0 0.006110686234320314 1.2160569620537937E-4 38-39 2.675325316518346E-4 5.229044936831313E-4 0.0 0.009710214841999543 1.2160569620537937E-4 40-41 2.7969310127237256E-4 5.83707341785821E-4 0.0 0.013808326804120828 1.2160569620537937E-4 42-43 2.7969310127237256E-4 5.958679114063589E-4 0.0 0.017614585095349203 1.2768598101564832E-4 44-45 2.9793395570317947E-4 6.870721835603934E-4 0.0 0.022071433861276357 1.337662658259173E-4 46-47 3.040142405134484E-4 8.025975949555039E-4 0.0 0.027142391393040678 1.337662658259173E-4 48-49 3.040142405134484E-4 8.329990190068487E-4 0.0 0.032170786931133115 1.4592683544645526E-4 50-51 3.040142405134484E-4 8.938018671095383E-4 0.0 0.03745455443125685 1.4592683544645526E-4 52-53 3.100945253237174E-4 8.998821519198073E-4 0.0 0.042045169463009915 1.580874050669932E-4 54-55 3.161748101339864E-4 8.998821519198073E-4 0.0 0.04686075503274294 1.88488829118338E-4 56-57 3.161748101339864E-4 9.120427215403453E-4 0.0 0.05204723797590237 1.9456911392860699E-4 58-59 3.161748101339864E-4 9.363638607814211E-4 0.0 0.057616778862108746 1.9456911392860699E-4 60-61 3.2225509494425534E-4 9.78925854453304E-4 0.0 0.06274853924197575 1.9456911392860699E-4 62-63 3.283353797545243E-4 9.85006139263573E-4 0.0 0.06737563598259044 1.9456911392860699E-4 64-65 3.283353797545243E-4 0.0010822906962278764 0.0 0.07236754981182127 1.9456911392860699E-4 66-67 3.4049594937506225E-4 0.0011005315506586832 0.0 0.07736554392586237 2.0064939873887597E-4 68-69 3.4049594937506225E-4 0.0011370132595202973 0.0 0.08246082259686775 2.0672968354914495E-4 70-71 3.4049594937506225E-4 0.001155254113951104 0.0 0.08700279535013866 2.0672968354914495E-4 72-73 3.648170886161381E-4 0.001161334398761373 0.0 0.09121643272365507 2.0672968354914495E-4 74-75 3.648170886161381E-4 0.001209976677243525 0.0 0.09435385968575385 2.0672968354914495E-4 76-77 3.648170886161381E-4 0.0013315823734489042 0.0 0.09722375411620081 2.0672968354914495E-4 78-79 3.7697765823667607E-4 0.0014167063607926698 0.0 0.09972883145803163 2.0672968354914495E-4 80-81 3.7697765823667607E-4 0.0014227866456029386 0.0 0.10080504186944923 2.1889025316968288E-4 82-83 3.7697765823667607E-4 0.0014349472152234766 0.0 0.10127322379983994 2.310508227902208E-4 84-85 3.7697765823667607E-4 0.0014349472152234766 0.0 0.10153467604668151 2.310508227902208E-4 86-87 3.7697765823667607E-4 0.0014471077848440146 0.0 0.10162588031883554 2.371311076004898E-4 88-89 3.7697765823667607E-4 0.001513990917756973 0.0 0.10165020145807661 2.4321139241075874E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10690 0.0 49.77025 1 GTATCAA 18850 0.0 36.86222 1 TCAACGC 22815 0.0 29.961636 4 ATCAACG 22990 0.0 29.770771 3 CAACGCA 23585 0.0 28.983805 5 TATCAAC 24015 0.0 28.68236 2 AACGCAG 24170 0.0 28.38949 6 ACGCAGA 27630 0.0 24.771868 7 CGCAGAG 28185 0.0 24.253435 8 GTGGTAT 5085 0.0 20.97697 1 TGGTATC 5090 0.0 20.362461 2 GCAGAGT 33305 0.0 20.330822 9 CTTATAC 5355 0.0 20.161243 1 GAGTACT 20350 0.0 19.88353 12-13 GTACATG 22455 0.0 19.270432 1 TACATGG 22150 0.0 19.04836 2 AGAGTAC 30005 0.0 18.832314 10-11 CAGAGTA 32690 0.0 18.282885 10-11 ACATGGG 22410 0.0 17.977926 3 AGTACTT 22250 0.0 17.700401 12-13 >>END_MODULE