##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139954_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18868081 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19138904481065 33.0 31.0 34.0 30.0 34.0 2 32.43044621230956 34.0 31.0 34.0 31.0 34.0 3 32.480648561981475 34.0 31.0 34.0 31.0 34.0 4 36.119378117997265 37.0 35.0 37.0 35.0 37.0 5 36.0018017730579 37.0 35.0 37.0 35.0 37.0 6 36.02935014959921 37.0 35.0 37.0 35.0 37.0 7 35.97174524531668 37.0 35.0 37.0 35.0 37.0 8 35.941455201512014 37.0 35.0 37.0 35.0 37.0 9 37.55076141553558 39.0 37.0 39.0 35.0 39.0 10-11 37.46861837724779 39.0 37.0 39.0 35.0 39.0 12-13 37.437248891394944 39.0 37.0 39.0 35.0 39.0 14-15 38.70232598111063 40.0 38.0 41.0 34.5 41.0 16-17 38.67719563001664 40.0 38.0 41.0 34.5 41.0 18-19 38.694353098229755 40.0 38.0 41.0 34.0 41.0 20-21 38.60854105858674 40.0 38.0 41.0 34.0 41.0 22-23 38.58056054948601 40.0 38.0 41.0 34.0 41.0 24-25 38.46480059772622 40.0 38.0 41.0 34.0 41.0 26-27 38.30360659147934 40.0 38.0 41.0 34.0 41.0 28-29 38.17550881472238 40.0 38.0 41.0 34.0 41.0 30-31 38.03864777636427 40.0 37.5 41.0 33.5 41.0 32-33 37.91810975972881 40.0 37.0 41.0 33.0 41.0 34-35 37.73449368059196 40.0 37.0 41.0 33.0 41.0 36-37 37.89381894764191 40.0 37.0 41.0 33.0 41.0 38-39 37.94829599507446 40.0 37.0 41.0 33.0 41.0 40-41 37.9325624619142 40.0 37.0 41.0 33.0 41.0 42-43 37.891542172887554 40.0 37.0 41.0 33.0 41.0 44-45 37.808989448499915 40.0 37.0 41.0 33.0 41.0 46-47 37.727849324760484 40.0 37.0 41.0 33.0 41.0 48-49 37.63266875920651 40.0 37.0 41.0 33.0 41.0 50-51 37.537547768765926 39.5 37.0 41.0 32.0 41.0 52-53 37.416249891152425 39.0 36.0 40.0 32.0 41.0 54-55 37.267312727328445 39.0 36.0 40.0 32.0 41.0 56-57 37.10347876570912 39.0 36.0 40.0 31.0 41.0 58-59 36.91208376782757 39.0 35.0 40.0 31.0 41.0 60-61 36.69290066057604 38.0 35.0 40.0 31.0 41.0 62-63 36.48838788714711 38.0 35.0 40.0 31.0 41.0 64-65 36.247638457785854 38.0 35.0 40.0 30.5 41.0 66-67 35.96265157388686 37.0 34.0 40.0 30.0 41.0 68-69 35.60426827689149 37.0 34.0 39.0 30.0 40.5 70-71 35.33316436251462 36.0 34.0 39.0 29.0 40.0 72-73 34.9977124432949 36.0 34.0 39.0 29.0 40.0 74-75 34.67511606886014 35.0 33.5 38.0 29.0 40.0 76-77 33.70712153038765 34.5 32.0 37.0 28.5 39.0 78-79 34.06424580792654 35.0 33.0 37.0 29.0 39.0 80-81 33.9203774183517 35.0 33.0 36.5 29.0 39.0 82-83 33.64565625975203 35.0 33.0 36.0 29.0 37.5 84-85 33.37127053481049 35.0 33.0 35.5 29.0 37.0 86-87 33.13272552788021 34.0 32.0 35.0 29.0 37.0 88-89 32.94684407717695 34.0 32.0 35.0 29.0 36.0 90-91 32.738858465758454 34.0 32.0 35.0 28.0 36.0 92-93 32.596954975097916 34.0 32.0 35.0 28.0 35.5 94-95 32.51824664741865 34.0 32.0 35.0 27.0 35.0 96-97 32.51988902980955 34.0 32.0 35.0 28.0 35.0 98-99 32.576422563041945 34.0 32.0 35.0 29.0 35.0 100-101 31.562165846837797 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 0.0 17 1.0 18 4.0 19 18.0 20 157.0 21 853.0 22 3793.0 23 12252.0 24 30855.0 25 62325.0 26 107961.0 27 167226.0 28 235189.0 29 312614.0 30 397571.0 31 495837.0 32 626973.0 33 816555.0 34 1136413.0 35 1692104.0 36 2862635.0 37 4702066.0 38 4065671.0 39 1129216.0 40 9790.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.382814381898655 24.189012564554133 18.029901189198963 25.39827186434825 2 11.604035071679103 23.34405836622794 40.88592958897974 24.165976973113214 3 14.470985626040681 27.758782438848172 32.80849099688421 24.96174093822694 4 10.966581279056683 20.38711735170468 38.99349679355241 29.652804575686226 5 12.44723959444944 38.23898553742541 36.09137421991926 13.222400648205893 6 28.956599132322904 39.735142088391726 18.38752636132168 12.920732417963693 7 25.190847462531824 33.38240209827402 23.41519769977643 18.01155273941772 8 24.095285577796705 37.44681825353622 21.03244097796697 17.425455190700102 9 24.77340965411374 16.782464523021712 21.444782858415756 36.99934296444879 10-11 23.49613933874574 27.638267365237652 29.14456801115055 19.721025284866055 12-13 24.41294109347951 24.974105739741102 29.358833577193145 21.254119589586242 14-15 21.483915494541773 26.439882867982256 27.137380809066553 24.938820828409415 16-17 21.04231793097792 29.689843052616084 27.71474745729497 21.553091559111024 18-19 21.001343485858474 28.543543988389704 29.90405595566396 20.551056570087862 20-21 21.796113731275064 27.619782044666362 29.78725101434478 20.796853209713795 22-23 21.38720046345022 27.680056403617904 29.739039179889442 21.19370395304243 24-25 21.298879834394675 27.853094832791648 29.754097678364438 21.09392765444924 26-27 21.332250314686984 27.93129117113843 29.640952108011614 21.09550640616297 28-29 21.10768418836045 27.94745139108377 29.83116340279618 21.113701017759603 30-31 21.448468530407467 27.7840714740409 29.65105537318411 21.116404622367526 32-33 21.422363821153017 27.86188682763086 29.63910922340996 21.07664012780616 34-35 21.46490927558705 28.043249610837645 29.61597438840907 20.875866725166233 36-37 21.36716817365413 27.92701631581381 29.546114389232304 21.159701121299758 38-39 21.275571693679307 27.96885932653102 29.62462243333121 21.13094654645846 40-41 21.52319118876736 27.904725757029436 29.484471397983093 21.08761165622011 42-43 21.536606096398387 27.976978791451838 29.230278324365695 21.25613678778408 44-45 21.584320200965593 28.16535830606569 28.920643352198717 21.329678140770003 46-47 21.726928155396962 28.060431513202772 28.621302012680484 21.591338318719778 48-49 21.664667656196617 28.200665958583997 28.586518461327902 21.548147923891484 50-51 21.64873512479261 28.289971177219304 28.463442475457573 21.597851222530515 52-53 21.82513546780606 28.2788245780337 28.416488165136318 21.479551789023922 54-55 21.785204350805863 28.256082683350396 28.35598064020557 21.602732325638165 56-57 21.889576942894184 28.422946369379037 28.164825417462446 21.52265127026433 58-59 21.673087705279897 28.579024892659856 28.353267962481937 21.39461943957831 60-61 21.892422105297147 28.634731005968383 28.130184984359673 21.342661904374797 62-63 21.790497297419396 28.71090716920329 28.059626655171797 21.438968878205518 64-65 21.727389132440415 28.617799492582886 28.131056157161797 21.523755217814905 66-67 21.83638621476319 28.559457648697133 28.033613888633724 21.570542247905948 68-69 21.85929524284395 28.401678339999233 28.086961593394534 21.652064823762284 70-71 21.84561665410614 28.22457642759137 28.168200737302364 21.761606181000126 72-73 21.880718766431443 28.25645992287868 28.1352367625009 21.727584548188982 74-75 21.754857102706104 28.3736406757491 28.06969846769929 21.80180375384551 76-77 21.859803753384007 28.30397191398592 28.05603006147604 21.780194271154034 78-79 21.837215331627966 28.35893181830307 28.036511328302936 21.767341521766028 80-81 21.86212229532988 28.293563085525687 28.067418067054973 21.776896552089458 82-83 21.870038585295237 28.26173441390732 28.131505268079017 21.73672173271843 84-85 21.948341932764862 28.28385437696784 28.072970137387397 21.694833552879896 86-87 21.840202656847683 28.249734413963306 28.11779324556293 21.79226968362609 88-89 21.871730531430032 28.206884096674923 28.13474924219325 21.78663612970179 90-91 21.88754598592378 28.219079617635597 28.17469957321726 21.718674823223363 92-93 21.928473015496166 28.167392856934352 28.15232161726599 21.751812510303488 94-95 21.769525204286797 28.21350361211409 28.205229474431942 21.811741709167176 96-97 21.690376708980512 28.287852400565995 28.30529227922672 21.716478611226773 98-99 21.87526821015129 28.85493540562537 28.317165415609267 20.95263096861407 100-101 22.34957408168775 31.66522912096979 25.576343589630085 20.408853207712376 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5736.0 1 4848.5 2 5642.5 3 7605.5 4 9519.5 5 13249.0 6 16579.0 7 21193.0 8 25774.5 9 27189.5 10 25738.0 11 24347.5 12 27631.0 13 38822.5 14 67126.5 15 105730.5 16 134419.0 17 146161.0 18 143945.0 19 133081.0 20 118907.0 21 105828.5 22 98646.5 23 102218.0 24 117253.5 25 144643.0 26 181690.0 27 223000.0 28 268315.0 29 316086.5 30 361778.0 31 407483.5 32 455129.5 33 502202.5 34 546549.0 35 586742.5 36 628901.0 37 664573.5 38 686328.0 39 704791.0 40 728149.5 41 749390.5 42 758478.0 43 762725.0 44 765071.0 45 767280.0 46 768937.5 47 767874.5 48 770295.5 49 754684.5 50 719898.5 51 681623.5 52 633821.0 53 583852.0 54 535771.0 55 485894.0 56 436358.0 57 385971.5 58 335428.5 59 286741.5 60 237945.5 61 192196.5 62 150383.0 63 113883.0 64 84347.0 65 62661.0 66 47343.5 67 36180.0 68 27349.5 69 19913.0 70 14416.5 71 10520.0 72 7557.5 73 5237.5 74 3545.0 75 2346.0 76 1491.5 77 909.0 78 589.5 79 396.5 80 263.5 81 180.0 82 128.5 83 92.5 84 61.5 85 40.0 86 32.5 87 23.5 88 15.5 89 11.5 90 7.5 91 4.5 92 4.0 93 3.5 94 2.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0599912094928996E-5 2 0.005331755783749285 3 1.0599912094928996E-5 4 2.1199824189857992E-5 5 1.0599912094928996E-5 6 1.0599912094928996E-5 7 1.0599912094928996E-5 8 0.0 9 0.0 10-11 7.128440883839751E-4 12-13 0.0 14-15 7.419938466450297E-4 16-17 7.075441323365105E-4 18-19 0.0 20-21 4.478615841638052E-4 22-23 0.001073378883822717 24-25 0.004217468808822722 26-27 0.013704264205909752 28-29 0.29569076165364905 30-31 0.28347978332529417 32-33 0.29134590117069886 34-35 0.16607885573516476 36-37 0.03869853049950514 38-39 0.02828453907573191 40-41 0.024317911897640432 42-43 0.019886751585888207 44-45 0.00882951667127057 46-47 0.003956045622003382 48-49 0.002840434834300388 50-51 9.83770125863831E-4 52-53 8.149224063707917E-4 54-55 5.327330865364219E-4 56-57 2.1814284263143758E-4 58-59 0.0014379031264122263 60-61 0.001195896511549458 62-63 1.6176398745993805E-4 64-65 6.824983737250707E-5 66-67 0.006736829386169656 68-69 0.006171010535509943 70-71 0.008200538986841128 72-73 0.008653201902113166 74-75 0.006851624628841797 76-77 0.004146286260357857 78-79 2.731050873444055E-4 80-81 3.78822450957501E-4 82-83 4.8701762000528124E-4 84-85 0.0 86-87 0.001402831745523928 88-89 0.0011318842183505719 90-91 8.785681103774174E-4 92-93 0.009906351792238333 94-95 1.0263034496182328E-4 96-97 1.0859200975648532E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 377.0 20-21 1427.0 22-23 2955.0 24-25 5891.0 26-27 9633.0 28-29 14497.0 30-31 29492.0 32-33 40167.0 34-35 60839.0 36-37 80296.0 38-39 97816.0 40-41 109069.0 42-43 135724.0 44-45 164606.0 46-47 160311.0 48-49 135820.0 50-51 119952.0 52-53 117159.0 54-55 127942.0 56-57 137177.0 58-59 139499.0 60-61 141954.0 62-63 147237.0 64-65 160360.0 66-67 167435.0 68-69 157375.0 70-71 151991.0 72-73 150776.0 74-75 156096.0 76-77 157640.0 78-79 168297.0 80-81 175156.0 82-83 174276.0 84-85 180643.0 86-87 194082.0 88-89 211324.0 90-91 233109.0 92-93 250270.0 94-95 295866.0 96-97 444518.0 98-99 1669642.0 100-101 1.1789385E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.7041936340126 #Duplication Level Percentage of deduplicated Percentage of total 1 87.7506119242307 71.69592988160439 2 8.043369014437406 13.143539588508219 3 2.2269072726679924 5.458429890331696 4 0.8860601440594242 2.8957931832644923 5 0.43009440870328314 1.75702584247996 6 0.22921869082149762 1.1236876979648707 7 0.1283317139208179 0.7339667442499851 8 0.08450470240696434 0.552351085475458 9 0.05397163544951218 0.3968738058160154 >10 0.16417778487236218 1.9817720852141254 >50 0.002071165660815704 0.11032126951715908 >100 6.108598960490337E-4 0.08802961949764332 >500 3.5385456279567495E-5 0.01812613136136977 >1k 3.5297416920792755E-5 0.0441531747146034 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0599912094928996E-5 0.0 2 0.0 0.0 0.0 2.1199824189857992E-5 0.0 3 0.0 0.0 0.0 2.1199824189857992E-5 0.0 4 0.0 3.709969233225149E-5 0.0 4.2399648379715984E-5 0.0 5 0.0 3.709969233225149E-5 0.0 4.2399648379715984E-5 0.0 6 0.0 3.709969233225149E-5 0.0 4.2399648379715984E-5 0.0 7 0.0 3.709969233225149E-5 0.0 5.2999560474644985E-5 0.0 8 0.0 3.709969233225149E-5 0.0 6.359947256957398E-5 5.299956047464498E-6 9 0.0 6.359947256957398E-5 0.0 1.0599912094928997E-4 5.299956047464498E-6 10-11 1.0599912094928996E-5 6.624945059330623E-5 0.0 1.1659903304421897E-4 5.299956047464498E-6 12-13 1.0599912094928996E-5 6.889942861703847E-5 0.0 1.3779885723407697E-4 5.299956047464498E-6 14-15 1.0599912094928996E-5 7.419938466450297E-5 0.0 1.5104874735273822E-4 5.299956047464498E-6 16-17 1.0599912094928996E-5 8.479929675943197E-5 0.0 1.6959859351886396E-4 5.299956047464498E-6 18-19 1.0599912094928996E-5 9.539920885436097E-5 0.0 1.8814843968498969E-4 5.299956047464498E-6 20-21 1.3249890118661245E-5 1.1129907699675446E-4 0.0 1.934483957324542E-4 5.299956047464498E-6 22-23 2.3849802213590242E-5 1.404488352578092E-4 0.0 2.1199824189857991E-4 1.3249890118661245E-5 24-25 2.6499780237322493E-5 1.457487913052737E-4 0.0 2.464479562070992E-4 2.6499780237322493E-5 26-27 3.974967035598374E-5 1.4839876932900596E-4 0.0 3.1269740680040545E-4 2.6499780237322493E-5 28-29 4.2399648379715984E-5 1.5104874735273822E-4 0.0 5.034958245091274E-4 2.6499780237322493E-5 30-31 4.2399648379715984E-5 1.6429863747139946E-4 0.0 0.0011103407919438124 2.6499780237322493E-5 32-33 4.2399648379715984E-5 1.6959859351886394E-4 0.0 0.0023001809245995924 2.6499780237322493E-5 34-35 4.2399648379715984E-5 2.1729819794604442E-4 0.0 0.003945817277337319 3.179973628478699E-5 36-37 4.7699604427180485E-5 2.702977584206894E-4 0.0 0.006648794861544213 3.179973628478699E-5 38-39 5.2999560474644985E-5 2.755977144681539E-4 0.0 0.010644961721332445 3.179973628478699E-5 40-41 5.829951652210948E-5 2.808976705156184E-4 0.0 0.015255923482626558 3.179973628478699E-5 42-43 6.359947256957398E-5 2.9679753865801187E-4 0.0 0.01947203851838457 3.179973628478699E-5 44-45 6.359947256957398E-5 3.444971430851924E-4 0.0 0.02445664718102493 3.4449714308519244E-5 46-47 7.684936268823522E-5 3.7629687936997937E-4 0.0 0.030082550525408494 3.709969233225149E-5 48-49 9.009925280689648E-5 3.7629687936997937E-4 0.0 0.035650154353269944 3.709969233225149E-5 50-51 9.009925280689648E-5 4.054466376310341E-4 0.0 0.0411515087305381 3.709969233225149E-5 52-53 9.274923083062872E-5 4.0809661565476636E-4 0.0 0.046573363767094283 4.504962640344824E-5 54-55 9.539920885436097E-5 4.0809661565476636E-4 0.0 0.052159517441121864 5.829951652210948E-5 56-57 9.804918687809322E-5 4.0809661565476636E-4 0.0 0.05836576597270279 5.829951652210948E-5 58-59 1.0069916490182546E-4 4.1074659367849864E-4 0.0 0.06437591613052754 5.829951652210948E-5 60-61 1.0864909897302221E-4 4.186965277496954E-4 0.0 0.06991172022210419 5.829951652210948E-5 62-63 1.1659903304421896E-4 4.292964398446244E-4 0.0 0.07537067495099263 5.829951652210948E-5 64-65 1.1659903304421896E-4 4.8759595636673386E-4 0.0 0.08066533104240967 6.0949494545841726E-5 66-67 1.2189898909168345E-4 4.8759595636673386E-4 0.0 0.08674703060687516 6.359947256957398E-5 68-69 1.2719894513914796E-4 5.008458464853951E-4 0.0 0.0924921829623267 6.359947256957398E-5 70-71 1.2719894513914796E-4 5.087957805565918E-4 0.0 0.09758014076789262 7.154940664077073E-5 72-73 1.2719894513914796E-4 5.140957366040563E-4 0.0 0.10125831026483298 7.419938466450298E-5 74-75 1.351488792103447E-4 5.299956047464499E-4 0.0 0.10431638490421999 7.419938466450298E-5 76-77 1.4309881328154145E-4 5.803451871973626E-4 0.0 0.10711476169728124 7.419938466450298E-5 78-79 1.4309881328154145E-4 5.988950333634883E-4 0.0 0.1095845412153997 7.419938466450298E-5 80-81 1.4839876932900596E-4 6.015450113872206E-4 0.0 0.11086183062283864 7.949934071196747E-5 82-83 1.4839876932900596E-4 6.068449674346851E-4 0.0 0.11145807567817839 8.479929675943197E-5 84-85 1.4839876932900596E-4 6.147949015058818E-4 0.0 0.11184232249161957 8.479929675943197E-5 86-87 1.4839876932900596E-4 6.253948136008108E-4 0.0 0.11198542130490112 8.479929675943197E-5 88-89 1.4839876932900596E-4 6.49244615814401E-4 0.0 0.1120410708433995 8.479929675943197E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24100 0.0 50.247604 1 GTATCAA 46515 0.0 39.47613 1 ATCAACG 61030 0.0 29.620909 3 TCAACGC 61235 0.0 29.529081 4 TATCAAC 62600 0.0 29.09922 2 CAACGCA 63120 0.0 28.63406 5 AACGCAG 65020 0.0 27.837004 6 ACGCAGA 75330 0.0 24.027107 7 CGCAGAG 75980 0.0 23.81024 8 CTTATAC 13610 0.0 23.57113 1 GCAGAGT 86590 0.0 20.749268 9 TGGTATC 11040 0.0 20.527746 2 AGAGTAC 80030 0.0 19.801165 10-11 GTGGTAT 12150 0.0 19.254063 1 GAGTACT 56075 0.0 18.934502 12-13 GTACATG 51250 0.0 18.669638 1 AGTACTT 60305 0.0 18.597574 12-13 TATACAC 22900 0.0 18.420973 3 TACATGG 50495 0.0 18.420774 2 ACATGGG 51435 0.0 17.62345 3 >>END_MODULE