##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139952_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11595540 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61804185057358 34.0 31.0 34.0 31.0 34.0 2 32.780945432468 34.0 31.0 34.0 31.0 34.0 3 32.82693026801684 34.0 31.0 34.0 31.0 34.0 4 36.307701064374754 37.0 37.0 37.0 35.0 37.0 5 36.241129089287774 37.0 37.0 37.0 35.0 37.0 6 36.2770163355911 37.0 37.0 37.0 35.0 37.0 7 36.23234062406753 37.0 37.0 37.0 35.0 37.0 8 36.21007309707008 37.0 37.0 37.0 35.0 37.0 9 37.88333350581344 39.0 38.0 39.0 35.0 39.0 10-11 37.851407480807275 39.0 38.0 39.0 35.0 39.0 12-13 37.82511474239234 39.0 38.0 39.0 35.0 39.0 14-15 39.22286348889314 41.0 39.0 41.0 36.0 41.0 16-17 39.20466049877798 40.0 39.0 41.0 36.0 41.0 18-19 39.23587465525539 40.5 39.0 41.0 36.0 41.0 20-21 39.15697990130239 40.0 39.0 41.0 36.0 41.0 22-23 39.15185280935866 40.0 39.0 41.0 36.0 41.0 24-25 39.05704351559823 40.0 39.0 41.0 35.0 41.0 26-27 38.91449097222075 40.0 38.0 41.0 35.0 41.0 28-29 38.78952862040502 40.0 38.0 41.0 35.0 41.0 30-31 38.668366006207 40.0 38.0 41.0 35.0 41.0 32-33 38.56516135805566 40.0 38.0 41.0 35.0 41.0 34-35 38.41606053188707 40.0 38.0 41.0 34.0 41.0 36-37 38.56506375588117 40.0 38.0 41.0 35.0 41.0 38-39 38.623748227273616 40.0 38.0 41.0 35.0 41.0 40-41 38.60903584016397 40.0 38.0 41.0 35.0 41.0 42-43 38.57062782789703 40.0 38.0 41.0 34.5 41.0 44-45 38.49654091991101 40.0 38.0 41.0 34.0 41.0 46-47 38.42451225874083 40.0 38.0 41.0 34.0 41.0 48-49 38.333416978647676 40.0 38.0 41.0 34.0 41.0 50-51 38.23774623793257 40.0 38.0 41.0 34.0 41.0 52-53 38.12721452812745 40.0 37.0 41.0 33.0 41.0 54-55 37.980113059184426 40.0 37.0 41.0 33.0 41.0 56-57 37.826813606520695 40.0 37.0 41.0 33.0 41.0 58-59 37.637841823118436 39.0 36.0 41.0 33.0 41.0 60-61 37.39929378741026 39.0 36.0 40.5 32.5 41.0 62-63 37.192972553158015 39.0 35.0 40.0 32.0 41.0 64-65 36.953256038656704 38.0 35.0 40.0 32.0 41.0 66-67 36.66558333907527 38.0 35.0 40.0 32.0 41.0 68-69 36.30483473062502 37.0 35.0 40.0 31.0 41.0 70-71 36.02649493699049 37.0 35.0 39.0 31.0 41.0 72-73 35.69510006521014 36.0 34.0 39.0 31.0 40.0 74-75 35.36386268934907 36.0 34.0 38.5 31.0 40.0 76-77 34.343654918905386 35.0 33.0 37.0 29.5 39.0 78-79 34.64244971751421 35.0 34.0 37.0 30.0 39.0 80-81 34.48252495953632 35.0 34.0 37.0 30.0 39.0 82-83 34.21322722276378 35.0 34.0 36.0 30.0 37.5 84-85 33.951561266427476 35.0 34.0 36.0 30.0 37.0 86-87 33.728703617828664 35.0 33.0 35.0 30.0 37.0 88-89 33.54870237539641 35.0 33.0 35.0 30.0 36.0 90-91 33.36261660129756 35.0 33.0 35.0 29.0 36.0 92-93 33.2286083038299 34.0 33.0 35.0 29.0 36.0 94-95 33.13993578928281 34.0 33.0 35.0 29.0 35.0 96-97 33.123540899392175 34.0 33.0 35.0 29.0 35.0 98-99 33.139055966736336 34.0 33.0 35.0 29.0 35.0 100-101 32.13642441653557 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 14.0 20 62.0 21 283.0 22 1342.0 23 4414.0 24 11660.0 25 24352.0 26 43596.0 27 69987.0 28 101884.0 29 138820.0 30 180067.0 31 229045.0 32 291232.0 33 381941.0 34 538586.0 35 784707.0 36 1364924.0 37 2748566.0 38 3338556.0 39 1295010.0 40 46491.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.56819949739296 21.34915665850836 15.889497168739014 24.193146675359664 2 13.657589642712495 21.58512823449619 41.31608107707179 23.441201045719527 3 16.932070433977202 26.373321121741633 31.367724142213298 25.326884302067864 4 11.942980830817783 18.938886756363804 38.71207711862294 30.40605529419547 5 12.998739170405175 37.93643935513137 35.547701961271315 13.51711951319214 6 29.495193841770195 38.34939123145623 18.616312823723604 13.539102103049967 7 26.155944440707373 33.07092209590929 22.63647057403105 18.136662889352284 8 24.580261031396557 36.58008165208347 20.90176912847526 17.937888188044717 9 25.3095845471621 17.02183770656649 21.11992196999881 36.548655776272604 10-11 23.94049098640256 27.12811103075874 28.63302414174659 20.298373841092115 12-13 24.96232603225033 24.577617773730246 28.821784065252675 21.63827212876675 14-15 22.03810020145401 25.96628738141739 26.762888600145374 25.23272381698322 16-17 21.433796382616844 29.22456507524414 27.339511674144024 22.002126867994992 18-19 21.442452998519517 28.094916501940965 29.429632378451746 21.032998121087772 20-21 22.320929903632372 27.111166018983752 29.384558928796277 21.183345148587605 22-23 21.93950240474545 27.163245613940518 29.29567102694113 21.601580954372906 24-25 21.76265291508703 27.330682209185003 29.355642080209815 21.55102279551815 26-27 21.7202193763829 27.50141685651228 29.247392317286792 21.530971449818033 28-29 21.446042628961802 27.47623301171683 29.467596596466635 21.610127762854738 30-31 21.858324967599668 27.286185760288944 29.213904781206413 21.64158449090498 32-33 21.782150833336374 27.394477608388957 29.25432012697996 21.56905143129471 34-35 21.84432475967969 27.612820723035743 29.17341063529032 21.36944388199425 36-37 21.696743292240093 27.471592192488657 29.178153880991438 21.65351063427981 38-39 21.59365796003504 27.546143957136156 29.245588077984504 21.614610004844312 40-41 21.845513039770744 27.43982879926233 29.106123438386515 21.608534722580412 42-43 21.84410091224618 27.48562218285967 28.92060507951697 21.749671825377177 44-45 21.860428099743416 27.715286728486593 28.647482159534977 21.776803012235018 46-47 22.056566671834627 27.593136247098204 28.247723405769023 22.10257367529815 48-49 21.970894848368978 27.751477990653733 28.215640908291817 22.06198625268547 50-51 21.904311975579933 27.874166628752572 28.153677114966115 22.06784428070138 52-53 22.10190422994816 27.840281579723896 28.073928520259884 21.983885670068055 54-55 22.062450864699954 27.78766570304125 28.020522354159503 22.129361078099294 56-57 22.160669127239697 27.925074684815677 27.843253333096037 22.071002854848594 58-59 21.95595818220352 28.113549567492647 28.019603839355167 21.91088841094867 60-61 22.182670478492756 28.16863282408975 27.79961338825335 21.849083309164147 62-63 22.062543084094244 28.26014966765363 27.745866124232325 21.931441124019805 64-65 22.03812329149125 28.138993478623757 27.792721168222045 22.030162061662946 66-67 22.13799379565602 28.103209571431982 27.653212566713535 22.105584066198464 68-69 22.102650860727405 27.966250149008232 27.793383297916634 22.137715692347733 70-71 22.12449830377558 27.757476231762997 27.846065855298292 22.27195960916313 72-73 22.16203014404133 27.831740540335677 27.788115171377243 22.218114144245753 74-75 22.02484714975798 27.91662863915642 27.752171739663716 22.30635247142188 76-77 22.1330835306298 27.86518030154256 27.70469778249248 22.297038385335156 78-79 22.138508240293522 27.851540441265744 27.696215821786936 22.313735496653806 80-81 22.13623399171013 27.839822570498885 27.7105788773829 22.31336456040808 82-83 22.192162892604188 27.796715532489607 27.791482162080822 22.219639412825384 84-85 22.293295186329818 27.7886968917629 27.716828185869723 22.20117973603756 86-87 22.134481291189058 27.796496132263073 27.77157447605959 22.297448100488282 88-89 22.177261001915262 27.728342945331434 27.75313676708 22.341259285673303 90-91 22.222428732143285 27.7292395993705 27.817105242729813 22.231226425756397 92-93 22.25358449102142 27.65718938675071 27.7922512712421 22.29697485098577 94-95 22.097445556790362 27.721873614069835 27.850740377162335 22.329940451977464 96-97 22.065174536343314 27.774363147005555 27.911605000188512 22.248857316462622 98-99 22.30286388368537 28.325004490918314 27.96716568798589 21.404965937410427 100-101 22.798919806240228 31.03122894773131 25.144252028123976 21.02559921790449 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3177.0 1 2755.0 2 3328.0 3 4557.5 4 6006.5 5 8800.0 6 11202.0 7 14288.5 8 17388.0 9 18399.5 10 17128.0 11 15669.5 12 17468.0 13 24132.5 14 39858.5 15 60691.0 16 76842.0 17 84440.5 18 83700.5 19 77133.5 20 68139.0 21 59339.0 22 54099.0 23 56212.5 24 65638.0 25 81276.0 26 101815.5 27 124395.5 28 148646.0 29 174096.0 30 197830.0 31 221843.0 32 248562.0 33 275772.0 34 301311.0 35 325694.5 36 352783.0 37 375649.0 38 392287.0 39 406234.0 40 420589.5 41 434327.5 42 442777.5 43 451110.0 44 459382.0 45 467610.5 46 474195.0 47 478289.0 48 484027.0 49 477570.0 50 461058.5 51 444238.0 52 421586.5 53 397265.0 54 371805.5 55 341856.0 56 310233.0 57 278570.5 58 246227.0 59 214231.0 60 181353.5 61 148569.0 62 116876.5 63 89257.0 64 66944.0 65 49908.0 66 37750.0 67 28834.0 68 21985.0 69 15816.5 70 10955.5 71 7659.5 72 5340.0 73 3728.5 74 2504.0 75 1659.0 76 1071.0 77 654.5 78 410.0 79 265.0 80 184.5 81 138.5 82 104.0 83 74.5 84 48.5 85 32.5 86 25.5 87 20.0 88 14.0 89 8.5 90 6.0 91 5.0 92 3.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.007278660588467635 3 0.0 4 8.624005436573029E-6 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 7.459764702635669E-4 12-13 0.0 14-15 7.71848486573286E-4 16-17 7.416644675452803E-4 18-19 8.624005436573029E-6 20-21 4.872690608768523E-4 22-23 0.0012031668386174638 24-25 0.004727302574840079 26-27 0.017038644716255436 28-29 0.3178630376036912 30-31 0.3051990919385042 32-33 0.3135545219641822 34-35 0.18075460110214442 36-37 0.043670997363018986 38-39 0.033550527935146145 40-41 0.03084119197115341 42-43 0.027126111359261684 44-45 0.014843648538462945 46-47 0.00784819412017081 48-49 0.0053369067879226436 50-51 0.0021625456350963562 52-53 0.001628802168733938 54-55 0.0011943130622623745 56-57 4.402503263355544E-4 58-59 0.002908861222386596 60-61 0.002276376055038392 62-63 2.929697818479765E-4 64-65 1.2598400167926983E-4 66-67 0.007928057866600736 68-69 0.007158804481629138 70-71 0.009485674260448159 72-73 0.010033432849600253 74-75 0.007894854376053686 76-77 0.004987381308928209 78-79 3.164903564610131E-4 80-81 4.772407054225977E-4 82-83 5.67342914677034E-4 84-85 0.0 86-87 0.0016050243334702666 88-89 0.0012407737355211723 90-91 0.0010850927509460618 92-93 0.011864158602737544 94-95 1.1474699721451664E-4 96-97 4.676239669675106E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 186.0 20-21 664.0 22-23 1440.0 24-25 3733.0 26-27 5385.0 28-29 8431.0 30-31 18503.0 32-33 25353.0 34-35 37460.0 36-37 51683.0 38-39 61713.0 40-41 67936.0 42-43 84499.0 44-45 103706.0 46-47 102817.0 48-49 89025.0 50-51 78290.0 52-53 75573.0 54-55 81379.0 56-57 87388.0 58-59 88729.0 60-61 88937.0 62-63 90476.0 64-65 98002.0 66-67 105735.0 68-69 99500.0 70-71 94211.0 72-73 92451.0 74-75 94150.0 76-77 95905.0 78-79 102057.0 80-81 104744.0 82-83 102153.0 84-85 104969.0 86-87 112004.0 88-89 119284.0 90-91 129811.0 92-93 135280.0 94-95 151904.0 96-97 230384.0 98-99 996285.0 100-101 7373405.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.16150711656343 #Duplication Level Percentage of deduplicated Percentage of total 1 88.86872795834458 74.79326080506156 2 7.72241359309787 12.998599331451052 3 1.9523655252152092 4.929420751335988 4 0.6954480437885373 2.3411982194603635 5 0.31588071925680455 1.3292498700858364 6 0.15111015822021245 0.7630595193861262 7 0.08678507751142153 0.5112774043012308 8 0.053206210148020266 0.3582331867214381 9 0.03610302485108185 0.2734636484640412 >10 0.11493182722546523 1.4491767404125362 >50 0.0023985130317982144 0.13226525308322643 >100 5.788359962030109E-4 0.08422397697310866 >500 3.367986945801175E-5 0.01779964779004045 >1k 1.6833443325717014E-5 0.018771645473360195 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7248010873146054E-5 0.0 0.0 8.624005436573027E-6 3 0.0 1.7248010873146054E-5 0.0 0.0 8.624005436573027E-6 4 0.0 5.174403261943816E-5 0.0 1.7248010873146054E-5 8.624005436573027E-6 5 0.0 6.036803805601119E-5 0.0 1.7248010873146054E-5 8.624005436573027E-6 6 2.587201630971908E-5 6.036803805601119E-5 0.0 1.7248010873146054E-5 8.624005436573027E-6 7 2.587201630971908E-5 6.036803805601119E-5 0.0 3.449602174629211E-5 8.624005436573027E-6 8 2.587201630971908E-5 6.899204349258421E-5 0.0 3.449602174629211E-5 8.624005436573027E-6 9 2.587201630971908E-5 1.1211207067544935E-4 0.0 5.174403261943816E-5 8.624005436573027E-6 10-11 3.0184019028005592E-5 1.1211207067544935E-4 0.0 8.624005436573028E-5 8.624005436573027E-6 12-13 3.449602174629211E-5 1.1211207067544935E-4 0.0 9.48640598023033E-5 8.624005436573027E-6 14-15 3.880802446457862E-5 1.6385610329488752E-4 0.0 1.1211207067544935E-4 1.293600815485954E-5 16-17 6.899204349258421E-5 1.854161168863201E-4 0.0 1.552320978583145E-4 2.587201630971908E-5 18-19 6.899204349258421E-5 2.0697613047775264E-4 0.0 1.8110411416803358E-4 4.312002718286514E-5 20-21 6.899204349258421E-5 2.242241413508987E-4 0.0 2.0697613047775264E-4 4.743202990115165E-5 22-23 6.899204349258421E-5 2.4147215222404477E-4 0.0 2.457841549423313E-4 6.46800407742977E-5 24-25 7.330404621087073E-5 2.500961576606178E-4 0.0 2.8459217940690986E-4 8.624005436573028E-5 26-27 7.761604892915725E-5 2.500961576606178E-4 0.0 3.837682419274997E-4 8.624005436573028E-5 28-29 7.761604892915725E-5 2.5872016309719085E-4 0.0 6.123043859966848E-4 8.624005436573028E-5 30-31 8.192805164744376E-5 3.147761984349155E-4 0.0 0.0010262566469521903 9.48640598023033E-5 32-33 9.055205708401679E-5 3.19088201153202E-4 0.0 0.0018024171362437625 1.0348806523887632E-4 34-35 9.48640598023033E-5 3.449602174629211E-4 0.0 0.003031337910955419 1.0348806523887632E-4 36-37 9.48640598023033E-5 3.7083223377264016E-4 0.0 0.005045043180395221 1.0348806523887632E-4 38-39 9.48640598023033E-5 3.794562392092132E-4 0.0 0.008024637058731202 1.0348806523887632E-4 40-41 9.48640598023033E-5 3.880802446457862E-4 0.0 0.011284511113755806 1.0348806523887632E-4 42-43 9.48640598023033E-5 4.096402582372188E-4 0.0 0.014863473369933612 1.0348806523887632E-4 44-45 1.2073607611202238E-4 4.6138429085665697E-4 0.0 0.018817579862602345 1.0348806523887632E-4 46-47 1.2073607611202238E-4 4.915683098846626E-4 0.0 0.023125270578170574 1.0348806523887632E-4 48-49 1.2073607611202238E-4 4.915683098846626E-4 0.0 0.027342409236654784 1.3798408698516843E-4 50-51 1.250480788303089E-4 5.605603533772468E-4 0.0 0.03167597196853273 1.4229608970345493E-4 52-53 1.3798408698516843E-4 5.778083642503928E-4 0.0 0.0358413665943975 1.7248010873146055E-4 54-55 1.3798408698516843E-4 5.821203669686794E-4 0.0 0.040248233372486314 1.9835212504117961E-4 56-57 1.3798408698516843E-4 5.950563751235388E-4 0.0 0.045254468528416955 2.0266412775946612E-4 58-59 1.3798408698516843E-4 6.03680380560112E-4 0.0 0.04975188736358979 2.1128813319603917E-4 60-61 1.6816810601317405E-4 6.252403941515445E-4 0.0 0.05443903431836723 2.1560013591432567E-4 62-63 1.9835212504117961E-4 6.468004077429771E-4 0.0 0.05907443724052523 2.1560013591432567E-4 64-65 1.9835212504117961E-4 7.330404621087073E-4 0.0 0.0635632320702615 2.1560013591432567E-4 66-67 2.1128813319603917E-4 7.416644675452803E-4 0.0 0.06786229878039315 2.1560013591432567E-4 68-69 2.1560013591432567E-4 7.416644675452803E-4 0.0 0.07257531775148031 2.1560013591432567E-4 70-71 2.242241413508987E-4 7.459764702635668E-4 0.0 0.07705117657306171 2.3284814678747174E-4 72-73 2.587201630971908E-4 7.502884729818533E-4 0.0 0.08083711495971727 2.500961576606178E-4 74-75 2.587201630971908E-4 7.847844947281456E-4 0.0 0.08388570088154584 2.500961576606178E-4 76-77 2.7596817397033686E-4 8.494645355024431E-4 0.0 0.0865807025804749 2.500961576606178E-4 78-79 2.845921794069099E-4 8.710245490938757E-4 0.0 0.08912909618698224 2.544081603789043E-4 80-81 2.845921794069099E-4 8.710245490938757E-4 0.0 0.09030627292907445 2.6734416853376386E-4 82-83 2.845921794069099E-4 8.753365518121623E-4 0.0 0.0907116011845934 2.802801766886234E-4 84-85 2.975281875617694E-4 8.839605572487353E-4 0.0 0.09101344137487344 2.845921794069099E-4 86-87 3.061521929983425E-4 9.055205708401678E-4 0.0 0.09108243341836603 2.845921794069099E-4 88-89 3.10464195716629E-4 9.529526007413195E-4 0.0 0.09112986544826718 2.845921794069099E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17290 0.0 53.18083 1 GTATCAA 31115 0.0 37.71275 1 ATCAACG 39665 0.0 29.180374 3 TCAACGC 39720 0.0 29.12928 4 CAACGCA 40715 0.0 28.428207 5 TATCAAC 41105 0.0 28.327677 2 AACGCAG 41950 0.0 27.622013 6 CTTATAC 8785 0.0 27.193764 1 ACGCAGA 48525 0.0 23.888163 7 CGCAGAG 48980 0.0 23.675026 8 TGGTATC 8060 0.0 22.76298 2 GTGGTAT 8440 0.0 22.501741 1 TATACAC 13675 0.0 20.955557 3 GCAGAGT 55820 0.0 20.635866 9 GAGTACT 32920 0.0 20.223087 12-13 GTACATG 38720 0.0 19.452835 1 AGAGTAC 51725 0.0 18.909704 10-11 TACATGG 38685 0.0 18.848448 2 CAGAGTA 55090 0.0 18.59697 10-11 GTACTTT 36035 0.0 18.475288 14-15 >>END_MODULE