##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139951_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10027388 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.65604223153627 34.0 31.0 34.0 31.0 34.0 2 32.814216124877184 34.0 31.0 34.0 31.0 34.0 3 32.85946040982956 34.0 31.0 34.0 31.0 34.0 4 36.32139994981744 37.0 37.0 37.0 35.0 37.0 5 36.25727856546491 37.0 37.0 37.0 35.0 37.0 6 36.290791879201244 37.0 37.0 37.0 35.0 37.0 7 36.24493447346408 37.0 37.0 37.0 35.0 37.0 8 36.22324517611167 37.0 37.0 37.0 35.0 37.0 9 37.90152759621947 39.0 38.0 39.0 35.0 39.0 10-11 37.874557362296144 39.0 38.0 39.0 35.0 39.0 12-13 37.84983227935331 39.0 38.0 39.0 35.0 39.0 14-15 39.2647772281276 41.0 39.0 41.0 36.0 41.0 16-17 39.24664952627743 41.0 39.0 41.0 36.0 41.0 18-19 39.27788707288478 41.0 39.0 41.0 36.0 41.0 20-21 39.198215902482644 41.0 39.0 41.0 36.0 41.0 22-23 39.20071516475292 40.5 39.0 41.0 36.0 41.0 24-25 39.10686332799507 40.0 39.0 41.0 35.5 41.0 26-27 38.96169012716797 40.0 39.0 41.0 35.0 41.0 28-29 38.82808498799007 40.0 38.0 41.0 35.0 41.0 30-31 38.702431572426455 40.0 38.0 41.0 35.0 41.0 32-33 38.60692842657434 40.0 38.0 41.0 35.0 41.0 34-35 38.455970958553706 40.0 38.0 41.0 34.5 41.0 36-37 38.592936656952034 40.0 38.0 41.0 35.0 41.0 38-39 38.641427443790135 40.0 38.0 41.0 35.0 41.0 40-41 38.635438095469596 40.0 38.0 41.0 35.0 41.0 42-43 38.60630092367981 40.0 38.0 41.0 34.5 41.0 44-45 38.533295578915585 40.0 38.0 41.0 34.0 41.0 46-47 38.46526392141804 40.0 38.0 41.0 34.0 41.0 48-49 38.38010586626871 40.0 38.0 41.0 34.0 41.0 50-51 38.27691247175338 40.0 38.0 41.0 34.0 41.0 52-53 38.16264278764257 40.0 37.0 41.0 33.5 41.0 54-55 38.02453544434688 40.0 37.0 41.0 33.0 41.0 56-57 37.86703945075666 40.0 37.0 41.0 33.0 41.0 58-59 37.66773231021834 39.0 36.0 41.0 33.0 41.0 60-61 37.43813479267032 39.0 36.0 41.0 33.0 41.0 62-63 37.23811108107661 39.0 35.0 40.0 32.0 41.0 64-65 37.00571668073991 38.5 35.0 40.0 32.0 41.0 66-67 36.72734042046784 38.0 35.0 40.0 32.0 41.0 68-69 36.373762762294646 37.0 35.0 40.0 31.0 41.0 70-71 36.10077000551104 37.0 35.0 39.0 31.0 41.0 72-73 35.774885796810935 36.0 34.5 39.0 31.0 40.0 74-75 35.44397212401715 36.0 34.0 38.5 31.0 40.0 76-77 34.42974629415602 35.0 33.5 37.0 29.5 39.0 78-79 34.70992817324321 35.0 34.0 37.0 30.0 39.0 80-81 34.545723083695364 35.0 34.0 37.0 30.0 39.0 82-83 34.27619356590084 35.0 34.0 36.0 30.0 38.0 84-85 34.017129220097644 35.0 34.0 36.0 30.0 37.0 86-87 33.79634635956105 35.0 33.5 35.0 30.0 37.0 88-89 33.616492930320234 35.0 33.0 35.0 30.0 36.5 90-91 33.435267903589995 35.0 33.0 35.0 30.0 36.0 92-93 33.304243051720675 35.0 33.0 35.0 29.0 36.0 94-95 33.21750167402705 34.0 33.0 35.0 29.0 35.5 96-97 33.20103683203918 34.0 33.0 35.0 29.0 35.0 98-99 33.2151981031249 34.0 33.0 35.0 30.0 35.0 100-101 32.22452915865193 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 4.0 19 8.0 20 37.0 21 250.0 22 1290.0 23 4329.0 24 10879.0 25 22546.0 26 39721.0 27 62622.0 28 89406.0 29 119701.0 30 154258.0 31 193417.0 32 244266.0 33 318285.0 34 445066.0 35 648464.0 36 1117960.0 37 2276461.0 38 2959609.0 39 1266990.0 40 51818.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.715160789146765 21.41672601246965 15.840577410645466 24.02753578773812 2 13.677586614608689 21.437712193660946 41.700838566708086 23.18386262502228 3 16.904034919565785 26.583027063780424 31.4922621416726 25.02067587498119 4 11.90973400246086 19.080326617525245 38.62338599511378 30.38655338490011 5 12.89764721357618 38.036090558786654 35.66162351168854 13.40463871594863 6 29.23326884660979 38.40442180998898 18.696854923421228 13.66545441998 7 26.024885645682172 33.16826208063976 22.606607284629586 18.200244989048493 8 24.487603351939708 36.72821875447524 21.02958417486189 17.75459371872316 9 25.178810274420414 17.21932969981814 21.092691336966315 36.50916868879513 10-11 23.888001201519373 27.138845097346202 28.690947237662286 20.282206463472136 12-13 24.932574664508845 24.52771848461434 28.81444300350201 21.72526384737481 14-15 22.066367922656056 26.025124973646978 26.51869184509431 25.389815258602656 16-17 21.531964816871053 29.39763681291864 27.101466734933588 21.968931635276714 18-19 21.550075807386314 28.172853007468447 29.12523970601713 21.15183147912811 20-21 22.47790316571904 27.12835474132319 29.056711896115893 21.337030196841873 22-23 22.08671908326703 27.34464647818673 28.960411074450544 21.608223364095696 24-25 21.987010207263346 27.669065608743836 28.952327280086127 21.39159690390669 26-27 21.98051321796904 27.81637200105701 28.86169235617787 21.34142242479608 28-29 21.604982237420813 27.72916271600419 29.068791664775855 21.597063381799135 30-31 22.294525745034637 27.437075438784802 28.95557809459777 21.312820721582796 32-33 21.56209629825658 27.895425009961617 28.959353984777962 21.583124707003837 34-35 21.89080637050872 27.81300449341843 29.0676443488789 21.228544787193947 36-37 21.690007553223598 27.76859234864905 28.97399625243906 21.567403845688286 38-39 21.627417473156537 27.447859923343003 29.194305500633515 21.730417102866937 40-41 21.83032588192618 27.354531872771627 29.166588235366138 21.64855400993606 42-43 21.957466821780216 27.362658339302104 28.98053002469625 21.699344814221433 44-45 21.849505026790876 27.69126502452054 28.664271975243416 21.794957973445168 46-47 22.170746031843162 27.468740191633483 28.17014382004066 22.19036995648269 48-49 22.02274728540443 27.557239952949615 28.228256041452326 22.191756720193627 50-51 21.884845752779533 27.746326391060933 28.246259672233244 22.12256818392629 52-53 22.043499719902353 27.725235287657146 28.32754851167308 21.903716480767425 54-55 22.00336820123045 27.734170978925928 28.0887901877079 22.17367063213572 56-57 22.214105766796127 27.98393465467919 27.761283045782807 22.04067653274188 58-59 21.84717792842259 28.249524336543928 28.12961991642598 21.7736778186075 60-61 22.184265791695452 28.47916276508094 27.607324871107924 21.72924657211568 62-63 21.923435570028126 28.608339888648228 27.60704807681612 21.861176464507533 64-65 21.98285541003661 28.46072563960637 27.646822332468417 21.909596617888603 66-67 22.12042499993967 28.264655208968108 27.573589614503806 22.041330176588414 68-69 22.10603180716973 28.02890537487952 27.751088056774325 22.113974761176422 70-71 22.108545064370873 27.831667939916404 27.811636078205847 22.248150917506877 72-73 22.153676943530858 27.87026650789065 27.773245956655764 22.202810591922727 74-75 22.038771891862336 27.974247763410293 27.73330469788614 22.253675646841238 76-77 22.15955880094816 27.898261137508477 27.704500287751944 22.237679773791417 78-79 22.140485589671492 27.908994100698592 27.692954722639783 22.257565586990133 80-81 22.140633357631057 27.912827619137424 27.698686517450614 22.247852505780898 82-83 22.17525485542926 27.851892771102825 27.798004622831503 22.174847750636413 84-85 22.275953968858126 27.833822580620637 27.74797412598151 22.142249324539723 86-87 22.11867826855946 27.82069020173705 27.798735637681983 22.261895892021506 88-89 22.172895830437533 27.798369171972205 27.780773532625002 22.247961464965258 90-91 22.243353345728774 27.753221528443955 27.830523983653194 22.172901142174076 92-93 22.24101952391671 27.716370584088533 27.828084466019547 22.21452542597521 94-95 22.060977211677187 27.75189776972855 27.880115765873175 22.307009252721084 96-97 22.064695281243562 27.740699512318418 27.95915039185916 22.235454814578855 98-99 22.252748696517628 28.386496696524826 27.972621920820984 21.38813268613656 100-101 22.791639233897516 31.07942153604367 25.20579818793724 20.92314104212157 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2325.0 1 2047.5 2 2580.5 3 3593.0 4 4842.5 5 7260.5 6 9339.5 7 11783.5 8 14364.0 9 15257.5 10 14245.0 11 13104.5 12 14339.0 13 19232.5 14 31536.5 15 48553.5 16 62016.0 17 69059.0 18 69311.0 19 64219.0 20 56960.5 21 49654.0 22 45364.0 23 47008.5 24 54601.5 25 67207.5 26 84023.0 27 102917.0 28 123670.0 29 146679.5 30 169520.5 31 192119.0 32 216724.0 33 243454.5 34 267975.5 35 289900.5 36 313946.0 37 334554.0 38 348048.5 39 359667.5 40 372860.0 41 384417.0 42 390328.5 43 396760.0 44 405867.5 45 418401.5 46 433818.5 47 442378.0 48 434355.5 49 420492.0 50 409632.0 51 393020.0 52 370140.0 53 345095.0 54 321043.5 55 294895.0 56 266966.5 57 238936.5 58 210842.0 59 182723.0 60 154021.0 61 126470.5 62 99685.5 63 76294.0 64 57652.0 65 43724.0 66 33616.0 67 26079.0 68 20124.0 69 14365.5 70 10004.5 71 7181.5 72 5118.5 73 3669.5 74 2532.5 75 1702.5 76 1154.5 77 751.5 78 482.0 79 306.0 80 194.5 81 123.0 82 83.5 83 60.0 84 47.5 85 39.0 86 28.0 87 19.0 88 11.0 89 6.0 90 3.5 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.972686805377433E-6 2 0.008726100954705253 3 9.972686805377433E-6 4 1.9945373610754865E-5 5 9.972686805377433E-6 6 9.972686805377433E-6 7 9.972686805377433E-6 8 0.0 9 0.0 10-11 8.377056916517043E-4 12-13 0.0 14-15 7.379788235979299E-4 16-17 8.177603180409494E-4 18-19 9.972686805377433E-6 20-21 4.886753233671824E-4 22-23 0.0012915976089984957 24-25 0.00426965824727636 26-27 0.016461267570494542 28-29 0.3220846352867803 30-31 0.3097966480328543 32-33 0.31858746703684815 34-35 0.18319049114664654 36-37 0.044655833988786336 38-39 0.034390673796678685 40-41 0.031005818027567945 42-43 0.026594970459816257 44-45 0.014058143965646556 46-47 0.0068354787601749 48-49 0.005364588184431162 50-51 0.0017731026084895193 52-53 0.0016256720114970957 54-55 0.0011516286759865686 56-57 4.636394573760156E-4 58-59 0.0022138760685394003 60-61 0.0021135556730865553 62-63 2.5842911502859685E-4 64-65 1.4761883159808344E-4 66-67 0.007669874359414679 68-69 0.006895822724561653 70-71 0.008951230779538768 72-73 0.009468432690633535 74-75 0.00773984527503729 76-77 0.004912227400150044 78-79 3.979173617466736E-4 80-81 5.324708461376577E-4 82-83 7.390463158447209E-4 84-85 0.0 86-87 0.0017568472158459925 88-89 0.0013769745945589238 90-91 0.001284405688033403 92-93 0.011727712732284267 94-95 1.6988787671957112E-4 96-97 4.154899932351304E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 169.0 20-21 635.0 22-23 1275.0 24-25 3775.0 26-27 5020.0 28-29 8195.0 30-31 17981.0 32-33 24419.0 34-35 36010.0 36-37 50581.0 38-39 59408.0 40-41 63245.0 42-43 77592.0 44-45 94311.0 46-47 94112.0 48-49 82055.0 50-51 72159.0 52-53 69884.0 54-55 77842.0 56-57 87579.0 58-59 89058.0 60-61 90243.0 62-63 91701.0 64-65 98754.0 66-67 107484.0 68-69 94636.0 70-71 85996.0 72-73 82459.0 74-75 84968.0 76-77 85777.0 78-79 91123.0 80-81 92923.0 82-83 90868.0 84-85 93113.0 86-87 98310.0 88-89 104879.0 90-91 112673.0 92-93 116375.0 94-95 130448.0 96-97 193368.0 98-99 835765.0 100-101 6230220.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.94478135790716 #Duplication Level Percentage of deduplicated Percentage of total 1 89.39991747355833 75.94056443206357 2 7.417705290146006 12.601907080976874 3 1.8158435918714113 4.6273931067502145 4 0.6525655836533366 2.2172816330051104 5 0.28631679298925783 1.2160558689784835 6 0.1467399060189488 0.747887353995567 7 0.09013210333169247 0.5359376267587239 8 0.05180993033774247 0.3520786563766348 9 0.035056656023794826 0.26800919829725495 >10 0.10164244811920799 1.303815850581653 >50 0.0017297491320613393 0.09752960795836808 >100 5.029039985821139E-4 0.07077933728185835 >500 3.757081960079238E-5 0.020760246975667297 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.972686805377433E-6 0.0 9.972686805377433E-6 0.0 3 0.0 9.972686805377433E-6 0.0 9.972686805377433E-6 0.0 4 0.0 4.9863434026887164E-5 0.0 4.9863434026887164E-5 0.0 5 0.0 4.9863434026887164E-5 0.0 5.983612083226459E-5 0.0 6 7.978149444301946E-5 4.9863434026887164E-5 0.0 7.978149444301946E-5 0.0 7 7.978149444301946E-5 4.9863434026887164E-5 0.0 8.975418124839689E-5 0.0 8 7.978149444301946E-5 5.983612083226459E-5 0.0 8.975418124839689E-5 0.0 9 7.978149444301946E-5 1.6953567569141635E-4 0.0 1.3961761527528407E-4 9.972686805377433E-6 10-11 7.978149444301946E-5 1.6953567569141635E-4 0.0 2.2937179652368094E-4 9.972686805377433E-6 12-13 7.978149444301946E-5 1.6953567569141635E-4 0.0 2.8920791735594553E-4 9.972686805377433E-6 14-15 7.978149444301946E-5 2.0942642291292608E-4 0.0 3.0416694756401166E-4 2.99180604161323E-5 16-17 1.296449284699066E-4 2.1441276631561478E-4 0.0 3.390713513828327E-4 5.983612083226459E-5 18-19 1.296449284699066E-4 2.493171701344358E-4 0.0 4.03893815617786E-4 5.983612083226459E-5 20-21 1.296449284699066E-4 2.7923523055056813E-4 0.0 4.637299364500506E-4 6.482246423495332E-5 22-23 1.3463127187259534E-4 3.091532909667004E-4 0.0 4.8367531006080546E-4 1.0471321145646303E-4 24-25 1.3961761527528407E-4 3.590167249935876E-4 0.0 5.036206836715603E-4 1.296449284699066E-4 26-27 1.3961761527528407E-4 3.7397575520165373E-4 0.0 5.484977742957588E-4 1.3961761527528407E-4 28-29 1.3961761527528407E-4 3.8893478540971986E-4 0.0 8.726100954705254E-4 1.4460395867797277E-4 30-31 1.3961761527528407E-4 4.637299364500506E-4 0.0 0.0017103157871222298 1.495903020806615E-4 32-33 1.4460395867797277E-4 4.7868896665811673E-4 0.0 0.003470495008271347 1.5956298888603892E-4 34-35 1.5956298888603892E-4 5.484977742957588E-4 0.0 0.005639554388440938 1.6953567569141635E-4 36-37 1.5956298888603892E-4 6.083338951280233E-4 0.0 0.009334434849833276 1.7950836249679378E-4 38-39 1.6454933228872762E-4 6.282792687387782E-4 0.0 0.015158483944173698 1.7950836249679378E-4 40-41 1.6953567569141635E-4 6.581973291549105E-4 0.0 0.02135650879371577 1.894810493021712E-4 42-43 1.6953567569141635E-4 6.881153895710427E-4 0.0 0.02725535303909652 1.9945373610754866E-4 44-45 1.6953567569141635E-4 8.177603180409495E-4 0.0 0.034410755821954825 2.193991097183035E-4 46-47 1.6953567569141635E-4 9.075144992893463E-4 0.0 0.04244874138708904 2.3934448332905837E-4 48-49 1.6953567569141635E-4 9.075144992893463E-4 0.0 0.05053160404284745 2.3934448332905837E-4 50-51 1.8449470589948248E-4 0.001037159427759253 0.0 0.05812081870173967 2.3934448332905837E-4 52-53 1.894810493021712E-4 0.0010670774881753854 0.0 0.06568011530021577 2.6427620034250195E-4 54-55 1.894810493021712E-4 0.0010820365183834514 0.0 0.07343886563479941 3.0416694756401166E-4 56-57 1.894810493021712E-4 0.001106968235396895 0.0 0.07926790107254253 3.1912597777207784E-4 58-59 1.894810493021712E-4 0.0011169409222022725 0.0 0.08446367089814416 3.2909866457745524E-4 60-61 2.0444007951023736E-4 0.0011468589826184048 0.0 0.08954475482548396 3.390713513828327E-4 62-63 2.3934448332905837E-4 0.0011668043562291595 0.0 0.09460589337921302 3.4904403818821015E-4 64-65 2.3934448332905837E-4 0.001316394658309821 0.0 0.0997368407405797 3.4904403818821015E-4 66-67 2.3934448332905837E-4 0.0013612717489340195 0.0 0.10491266519257059 3.4904403818821015E-4 68-69 2.3934448332905837E-4 0.0013911898093501517 0.0 0.11040262927893085 3.4904403818821015E-4 70-71 2.3934448332905837E-4 0.0014211078697662842 0.0 0.11524935506634429 3.640030683962763E-4 72-73 2.493171701344358E-4 0.0014360668999743502 0.0 0.11945284255481088 4.487709062419845E-4 74-75 2.493171701344358E-4 0.0014659849603904825 0.0 0.12250448471725638 4.587435930473619E-4 76-77 2.493171701344358E-4 0.001545766454833502 0.0 0.1251971101547083 4.637299364500506E-4 78-79 2.493171701344358E-4 0.0015856572020550117 0.0 0.1277501179768849 4.6871627985273933E-4 80-81 2.493171701344358E-4 0.0015906435454577004 0.0 0.1289069496463087 4.836753100608055E-4 82-83 2.543035135371245E-4 0.0015956298888603893 0.0 0.12940059764317485 4.986343402688716E-4 84-85 2.592898569398132E-4 0.0015956298888603893 0.0 0.129654901156712 4.986343402688716E-4 86-87 2.592898569398132E-4 0.0015956298888603893 0.0 0.12981945048900073 5.086070270742491E-4 88-89 2.692625437451907E-4 0.0016654386964980311 0.0 0.12985435489281955 5.086070270742491E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15130 0.0 54.19859 1 CTTATAC 10170 0.0 42.13793 1 GTATCAA 27950 0.0 38.11782 1 TATACAC 14850 0.0 31.493914 3 TCAACGC 34560 0.0 30.245007 4 ATCAACG 34695 0.0 30.053513 3 TTATACA 14890 0.0 29.810495 2 CAACGCA 35165 0.0 29.700726 5 TATCAAC 35810 0.0 29.45388 2 AACGCAG 36290 0.0 28.779995 6 ACGCAGA 41505 0.0 25.12281 7 CGCAGAG 41930 0.0 24.83769 8 TACACAT 19965 0.0 23.468245 5 ACACATC 18530 0.0 23.101908 6 ACATCTC 19130 0.0 23.045313 8 GTGGTAT 6870 0.0 22.756502 1 TGGTATC 6655 0.0 22.083467 2 GCAGAGT 47885 0.0 21.588966 9 GAGTACT 27345 0.0 20.68635 12-13 CACATCT 20950 0.0 20.372341 7 >>END_MODULE