Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139948_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7897385 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 43 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7910 | 0.0 | 42.712578 | 1 |
GTATCAA | 13860 | 0.0 | 33.32128 | 1 |
TCAACGC | 16145 | 0.0 | 27.867945 | 4 |
ATCAACG | 16335 | 0.0 | 27.543972 | 3 |
CAACGCA | 16605 | 0.0 | 27.07121 | 5 |
AACGCAG | 17130 | 0.0 | 26.313593 | 6 |
TATCAAC | 17805 | 0.0 | 25.339083 | 2 |
ACGCAGA | 20185 | 0.0 | 22.249678 | 7 |
GTACATG | 19850 | 0.0 | 22.211412 | 1 |
CGCAGAG | 20480 | 0.0 | 21.92919 | 8 |
TACATGG | 19895 | 0.0 | 21.542284 | 2 |
ACATGGG | 20015 | 0.0 | 20.879848 | 3 |
CATGGGG | 14780 | 0.0 | 18.970497 | 4 |
GCAGAGT | 25025 | 0.0 | 17.913523 | 9 |
TATACCG | 455 | 0.0 | 17.142519 | 5 |
AGAGTAC | 21835 | 0.0 | 17.127642 | 10-11 |
GAGTACT | 14815 | 0.0 | 16.542809 | 12-13 |
CAGAGTA | 24250 | 0.0 | 16.149872 | 10-11 |
ATGGGGG | 9705 | 0.0 | 15.143279 | 5 |
AGTACTT | 16290 | 0.0 | 14.629105 | 12-13 |