##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139948_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7897385 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.72823675178556 31.0 31.0 34.0 30.0 34.0 2 31.923260800885355 33.0 31.0 34.0 30.0 34.0 3 31.987623498157934 33.0 31.0 34.0 30.0 34.0 4 35.69584615667085 37.0 35.0 37.0 33.0 37.0 5 35.44893771799146 37.0 35.0 37.0 33.0 37.0 6 35.4766551206507 37.0 35.0 37.0 33.0 37.0 7 35.43468629172821 37.0 35.0 37.0 33.0 37.0 8 35.42422586716996 37.0 35.0 37.0 33.0 37.0 9 37.19328359957125 39.0 37.0 39.0 34.0 39.0 10-11 37.03397073841531 39.0 37.0 39.0 33.0 39.0 12-13 37.038858115692726 39.0 37.0 39.0 33.0 39.0 14-15 38.138119516776754 40.0 37.5 41.0 33.0 41.0 16-17 38.06488350257712 40.0 37.0 41.0 33.0 41.0 18-19 38.132820547560996 40.0 37.5 41.0 33.5 41.0 20-21 38.17367027451449 40.0 37.5 41.0 33.5 41.0 22-23 38.15857551845205 40.0 37.5 41.0 34.0 41.0 24-25 38.112339166349784 40.0 37.0 41.0 33.0 41.0 26-27 37.98931429621015 40.0 37.0 41.0 33.0 41.0 28-29 37.817453619003516 40.0 37.0 41.0 33.0 41.0 30-31 37.71840254805532 39.0 37.0 41.0 33.0 41.0 32-33 37.626557923376524 39.0 37.0 41.0 32.5 41.0 34-35 37.55850512943731 39.0 37.0 41.0 32.0 41.0 36-37 37.516206277781734 39.0 37.0 40.5 32.0 41.0 38-39 37.43340412012134 39.0 36.0 40.0 32.0 41.0 40-41 37.42383542198427 39.0 36.0 40.0 32.0 41.0 42-43 37.37877956913621 39.0 36.0 40.0 32.0 41.0 44-45 37.315456811651984 39.0 36.0 40.0 31.0 41.0 46-47 37.26491599255316 39.0 36.0 40.0 31.0 41.0 48-49 37.28384097494437 39.0 36.0 40.0 31.0 41.0 50-51 37.189590393970676 39.0 36.0 40.0 31.0 41.0 52-53 37.01149705089753 39.0 36.0 40.0 31.0 41.0 54-55 36.822857733094345 39.0 35.0 40.0 31.0 41.0 56-57 36.715199040677234 39.0 35.0 40.0 31.0 41.0 58-59 36.535471112122515 38.0 35.0 40.0 30.0 41.0 60-61 36.369518974988196 38.0 35.0 40.0 30.0 41.0 62-63 36.238097718584484 38.0 34.5 40.0 30.0 41.0 64-65 35.99116499868827 38.0 34.0 40.0 29.0 41.0 66-67 35.860582611328155 37.0 34.0 40.0 29.0 41.0 68-69 35.60118597791157 37.0 34.0 39.0 29.0 41.0 70-71 35.2938645648989 36.0 34.0 39.0 29.0 40.5 72-73 35.0015305297228 36.0 34.0 39.0 29.0 40.0 74-75 34.651829886571946 35.5 33.0 38.5 29.0 40.0 76-77 32.50085850264195 33.5 30.5 36.0 25.5 38.5 78-79 33.78853639603219 35.0 32.5 37.0 28.0 39.0 80-81 33.792325267098235 35.0 33.0 36.5 29.0 39.0 82-83 33.6191941682747 35.0 33.0 36.0 29.0 38.5 84-85 33.40968414754415 35.0 33.0 36.0 29.0 37.0 86-87 33.16187498933063 35.0 32.0 35.0 28.5 37.0 88-89 32.99889432841637 34.0 32.0 35.0 28.0 36.0 90-91 32.830538225609615 34.0 32.0 35.0 28.0 36.0 92-93 32.791443616508644 34.0 32.0 35.0 28.5 36.0 94-95 32.753518511995765 34.0 32.0 35.0 29.0 35.5 96-97 32.779029124653874 34.0 32.0 35.0 29.0 35.0 98-99 32.919715153910204 34.0 32.0 35.0 29.0 35.0 100-101 31.75415144749384 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 15.0 20 64.0 21 348.0 22 1448.0 23 4944.0 24 12208.0 25 25823.0 26 46454.0 27 74067.0 28 108154.0 29 147464.0 30 192160.0 31 246225.0 32 314941.0 33 410351.0 34 553881.0 35 775633.0 36 1173734.0 37 1697855.0 38 1586998.0 39 519664.0 40 4952.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.03445634219428 21.052601589006994 13.689392121569355 24.223549947229365 2 14.857391258983085 22.31717962828506 40.310436093561606 22.514993019170248 3 17.983317241488468 26.81485936782792 31.008214754902735 24.193608635780876 4 12.370146873952184 18.431799694683708 39.46078853453245 29.73726489683166 5 12.521437478537198 38.413251780589626 36.45162752627959 12.61368321459359 6 29.361263253595972 39.05551014671312 18.93160837416436 12.651618225526551 7 25.753220844621357 32.89696526128586 24.116159969407594 17.233653924685196 8 24.12796079264619 37.09207229716913 21.83492218980324 16.945044720381436 9 25.45412183906445 16.182065329219736 21.508765243178594 36.85504758853722 10-11 23.70106709744367 26.957232213433418 29.89053616985175 19.45116451927116 12-13 24.45837864914991 24.551663069891898 29.81447074735041 21.17548753360778 14-15 21.55396511338659 26.04933949967866 27.15115365093342 25.245541736001332 16-17 21.321032215093982 29.162330315667784 27.833877922882067 21.682759546356166 18-19 21.33812759156901 28.504563579984637 29.282595387688566 20.87471344075779 20-21 22.02744072793522 27.76691875045073 29.130128911790386 21.075511609823664 22-23 21.7584532203489 27.714737525610015 28.95123088280571 21.575578371235373 24-25 21.565382361790743 27.807978209574486 29.046333159136616 21.580306269498156 26-27 21.544350968782815 27.991435779021955 28.922505170266245 21.541708081928984 28-29 21.519529752583193 28.13334985185034 28.864611405376273 21.482508990190198 30-31 21.80645515532444 27.94059844249456 28.768437474718866 21.484508927462134 32-33 21.532748273575606 28.136903702803632 28.7260201479877 21.604327875633057 34-35 21.66859674236677 28.149900184831527 28.764454124835915 21.417048947965792 36-37 21.675875229817073 28.045621047207476 28.721027983894427 21.557475739081024 38-39 21.5333969411756 28.202235804619402 28.754581429820934 21.50978582438406 40-41 21.777041653344796 28.0948259595679 28.61182379487287 21.516308592214436 42-43 21.674652835952728 28.189780829740975 28.397560354981326 21.738005979324967 44-45 21.783056379524258 28.24513505469406 28.23301574774184 21.738792818039844 46-47 21.821866135078118 28.227892400730653 28.055605206098143 21.894636258093087 48-49 21.74420808412098 28.336380519184516 28.100326468525534 21.81908492816897 50-51 21.73296403596757 28.41463210723805 28.023875420210352 21.82852843658403 52-53 21.91864364876487 28.29541194977665 27.882033452067194 21.903910949391285 54-55 21.84893817024243 28.212061979614866 27.97462473235714 21.964375117785565 56-57 21.826347789324867 28.369154533003794 27.905687343551268 21.898810334120075 58-59 21.83373274100052 28.40068321015626 27.880096049957505 21.88548799888572 60-61 21.91437491728394 28.363245057404484 27.891733112929217 21.83064691238236 62-63 21.928511801182495 28.35166225254727 27.878944377913832 21.840881568356398 64-65 21.875605442734514 28.327982120713617 27.83855374637566 21.957858690176206 66-67 21.925336053066687 28.379434382434294 27.703790868530014 21.991438695969006 68-69 21.89648092243118 28.342323541265575 27.78659704358511 21.974598492718137 70-71 21.86366372655258 28.157684656410975 27.839056785751794 22.139594831284647 72-73 21.89790944457045 28.20372862112078 27.816390359983128 22.081971574325642 74-75 21.77219449200876 28.322263803107113 27.7767961773013 22.12874552758283 76-77 21.898254471260298 28.249778243417623 27.712783741728515 22.139183543593564 78-79 21.89959046875971 28.270448989291413 27.681207978772644 22.148752563176238 80-81 21.915850953801673 28.25268637698771 27.687630100743494 22.143832568467122 82-83 21.936151723654486 28.225559856852616 27.763060592807786 22.075227826685104 84-85 22.03598273420864 28.187468989397686 27.719527879419374 22.057020396974295 86-87 21.858639583397952 28.24825069991611 27.775395109909912 22.117714606776023 88-89 21.89891538540514 28.26544379518245 27.718964484558654 22.11667633485376 90-91 21.956860440967247 28.232987594647895 27.785543118994205 22.024608845390656 92-93 21.97008699798526 28.196299112667138 27.769047307600648 22.064566581746956 94-95 21.796969674770388 28.248093467608328 27.83939245437682 22.11554440324447 96-97 21.798469596104642 28.22599766068672 27.886891282320857 22.088641460887782 98-99 22.01941312248311 28.82166640941124 27.943643055336842 21.215277412768813 100-101 25.968774300956955 35.88751694338015 28.560631066466023 9.583077689196877 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1509.0 1 1441.5 2 2148.0 3 3069.5 4 4010.0 5 6440.5 6 8616.5 7 10031.0 8 10906.0 9 10895.0 10 10197.0 11 9169.0 12 9584.5 13 12081.0 14 18096.0 15 26888.5 16 34186.0 17 38497.5 18 40540.5 19 40675.0 20 39994.0 21 39915.5 22 41558.5 23 46958.5 24 56682.0 25 70862.0 26 89002.5 27 108240.5 28 127878.5 29 147831.0 30 165378.5 31 181229.5 32 198085.5 33 215965.5 34 234035.5 35 251244.0 36 270108.0 37 286256.5 38 297107.0 39 306386.5 40 316144.5 41 324699.5 42 328714.5 43 332479.5 44 336777.0 45 340556.5 46 341822.0 47 339889.5 48 335953.0 49 327770.0 50 318403.0 51 307856.5 52 292931.5 53 275444.5 54 258029.5 55 238245.5 56 217311.0 57 196560.0 58 173371.0 59 149350.5 60 124825.0 61 101173.0 62 80262.0 63 62420.0 64 47445.0 65 35712.0 66 27220.0 67 21015.5 68 15939.0 69 11513.0 70 8201.5 71 5908.0 72 4130.0 73 2813.0 74 1904.0 75 1305.5 76 901.0 77 606.5 78 415.5 79 304.5 80 216.5 81 145.5 82 105.5 83 77.0 84 58.0 85 45.5 86 38.5 87 33.0 88 24.0 89 15.0 90 8.5 91 7.0 92 6.5 93 4.0 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 5.444840285740153E-4 3 1.2662419269163146E-4 4 1.2662419269163148E-5 5 1.2662419269163148E-5 6 0.0 7 0.0 8 0.0011522801534938464 9 0.0 10-11 3.4821652990198654E-4 12-13 4.0519741661322075E-4 14-15 6.331209634581574E-6 16-17 0.0 18-19 2.722420142870076E-4 20-21 0.0 22-23 0.0 24-25 1.7102921007878936E-4 26-27 0.0 28-29 5.328525480913698E-4 30-31 4.44850684914357E-4 32-33 0.0010837549405678353 34-35 0.0012865583393079354 36-37 2.5751608992719376E-5 38-39 0.0017268211747486551 40-41 4.3896468018114434E-4 42-43 1.455175533525227E-4 44-45 1.7389703797162214E-4 46-47 6.77308951294781E-5 48-49 0.0 50-51 0.0 52-53 4.209340906311787E-5 54-55 3.4767906837903577E-4 56-57 6.39350178845641E-4 58-59 6.40387166437425E-4 60-61 6.045839109751665E-4 62-63 8.214160795035182E-5 64-65 1.2099387392892063E-4 66-67 1.9928864684005238E-4 68-69 9.331176276417435E-5 70-71 1.4203302441413547E-4 72-73 0.0 74-75 0.0 76-77 7.332785104658205E-4 78-79 1.672340779570016E-5 80-81 1.444263779317174E-4 82-83 8.632904470782668E-6 84-85 4.3846714342076105E-5 86-87 3.565087808112714E-5 88-89 3.627836242374288E-5 90-91 5.5455689102097524E-5 92-93 6.601683467007993E-5 94-95 3.084526434584327E-4 96-97 4.9498775400296596E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 310.0 20-21 899.0 22-23 1720.0 24-25 4090.0 26-27 5965.0 28-29 11230.0 30-31 23266.0 32-33 29620.0 34-35 39762.0 36-37 60644.0 38-39 70801.0 40-41 70970.0 42-43 79849.0 44-45 92541.0 46-47 91696.0 48-49 86891.0 50-51 80878.0 52-53 78660.0 54-55 85130.0 56-57 89300.0 58-59 89161.0 60-61 87395.0 62-63 83538.0 64-65 86826.0 66-67 93016.0 68-69 93344.0 70-71 92404.0 72-73 87807.0 74-75 89715.0 76-77 87171.0 78-79 93736.0 80-81 94591.0 82-83 90192.0 84-85 90857.0 86-87 95699.0 88-89 101649.0 90-91 106871.0 92-93 112297.0 94-95 126786.0 96-97 186781.0 98-99 643784.0 100-101 4259543.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.27285987415723 #Duplication Level Percentage of deduplicated Percentage of total 1 91.1396278888731 79.54015973728455 2 6.330208468620004 11.04910793312154 3 1.452675086042935 3.8033732768071307 4 0.5043567758047165 1.7606663288554703 5 0.2358097012651741 1.0289893507741208 6 0.11340151054824942 0.5938124483757081 7 0.06454670760351666 0.39432230376139366 8 0.03937161162457921 0.27488585154653133 9 0.028776159282699672 0.22602399451159297 >10 0.08928350882640103 1.1617981993134454 >50 0.0015795087004783158 0.08694575224310254 >100 3.201532965490358E-4 0.05300193069451589 >500 4.291951142706819E-5 0.026912892710931575 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 5.0649677076652586E-5 0.0 0.0 0.0 5 0.0 6.331209634581573E-5 0.0 2.5324838538326293E-5 0.0 6 3.798725780748944E-5 6.331209634581573E-5 0.0 5.0649677076652586E-5 0.0 7 3.798725780748944E-5 7.597451561497888E-5 0.0 5.0649677076652586E-5 0.0 8 3.798725780748944E-5 7.597451561497888E-5 0.0 5.0649677076652586E-5 0.0 9 3.798725780748944E-5 2.152611275757735E-4 0.0 5.0649677076652586E-5 0.0 10-11 5.0649677076652586E-5 2.152611275757735E-4 0.0 8.863693488414203E-5 0.0 12-13 5.0649677076652586E-5 2.152611275757735E-4 0.0 9.496814451872361E-5 0.0 14-15 5.0649677076652586E-5 3.2922290099824184E-4 0.0 1.0129935415330517E-4 0.0 16-17 8.230572524956046E-5 3.2922290099824184E-4 0.0 1.0129935415330517E-4 0.0 18-19 8.863693488414203E-5 3.41885320267405E-4 0.0 1.2662419269163146E-4 0.0 20-21 8.863693488414203E-5 3.5454773953656814E-4 0.0 1.5194903122995777E-4 0.0 22-23 9.496814451872361E-5 4.1785983588238384E-4 0.0 2.0259870830661035E-4 6.331209634581573E-6 24-25 1.0763056378788675E-4 4.368534647861286E-4 0.0 2.0259870830661035E-4 1.2662419269163147E-5 26-27 1.1396177342246832E-4 4.4318467442071015E-4 0.0 3.0389806245991553E-4 1.2662419269163147E-5 28-29 1.1396177342246832E-4 4.4318467442071015E-4 0.0 7.090954790731363E-4 1.2662419269163147E-5 30-31 1.1396177342246832E-4 5.128279804011075E-4 0.0 0.0020386495023352667 1.899362890374472E-5 32-33 1.1396177342246832E-4 5.444840285740154E-4 0.0 0.004457171582745428 3.798725780748944E-5 34-35 1.2029298305704989E-4 6.077961249198311E-4 0.0 0.007920343252861548 3.798725780748944E-5 36-37 1.2662419269163146E-4 6.584458019964837E-4 0.0 0.012725731365508964 3.798725780748944E-5 38-39 1.2662419269163146E-4 6.8377064053481E-4 0.0 0.020373832604083503 3.798725780748944E-5 40-41 1.2662419269163146E-4 7.344203176114626E-4 0.0 0.028427131259271265 3.798725780748944E-5 42-43 1.2662419269163146E-4 7.534139465152072E-4 0.0 0.03565104145232884 4.431846744207102E-5 44-45 1.3295540232621304E-4 8.230572524956046E-4 0.0 0.044039894218149425 5.0649677076652586E-5 46-47 1.3928661196079461E-4 8.800381392068387E-4 0.0 0.0532581354461002 5.6980886711234155E-5 48-49 1.3928661196079461E-4 8.863693488414203E-4 0.0 0.061646988211920786 6.331209634581573E-5 50-51 1.5194903122995777E-4 9.876687029947255E-4 0.0 0.06955466904551316 6.331209634581573E-5 52-53 1.5194903122995777E-4 9.93999912629307E-4 0.0 0.07746868108874014 6.964330598039731E-5 54-55 1.5194903122995777E-4 0.0010129935415330517 0.0 0.08540168676087084 7.597451561497888E-5 56-57 1.5194903122995777E-4 0.001025655960802215 0.0 0.09384118920376808 7.597451561497888E-5 58-59 1.5194903122995777E-4 0.0010763056378788674 0.0 0.10237565979118404 7.597451561497888E-5 60-61 1.5194903122995777E-4 0.0011269553149555202 0.0 0.11037197755966058 7.597451561497888E-5 62-63 1.7727386976828407E-4 0.001183936201666754 0.0 0.11752624444673775 7.597451561497888E-5 64-65 1.7727386976828407E-4 0.0012535795076471516 0.0 0.12497174697700567 7.597451561497888E-5 66-67 1.7727386976828407E-4 0.001259910717281733 0.0 0.13284777176242515 7.597451561497888E-5 68-69 1.7727386976828407E-4 0.0012789043461854778 0.0 0.14064149082259508 7.597451561497888E-5 70-71 1.7727386976828407E-4 0.0013105603943583857 0.0 0.1477071207747881 7.597451561497888E-5 72-73 1.7727386976828407E-4 0.0013295540232621304 0.0 0.15353816484823773 7.597451561497888E-5 74-75 1.7727386976828407E-4 0.0013612100714350383 0.0 0.1587360879582292 7.597451561497888E-5 76-77 1.7727386976828407E-4 0.001411859748511691 0.0 0.16325657163732046 7.597451561497888E-5 78-79 1.7727386976828407E-4 0.0014181909581462726 0.0 0.16696032927355067 7.597451561497888E-5 80-81 1.7727386976828407E-4 0.0014371845870500173 0.0 0.16856845652073438 8.230572524956046E-5 82-83 1.7727386976828407E-4 0.0014435157966845987 0.0 0.16922690232273088 8.863693488414203E-5 84-85 1.7727386976828407E-4 0.0014625094255883435 0.0 0.17008161562339938 9.496814451872361E-5 86-87 1.7727386976828407E-4 0.0014751718448575068 0.0 0.17055012513635842 1.0129935415330517E-4 88-89 1.7727386976828407E-4 0.0015258215219341592 0.0 0.1707020741675884 1.0129935415330517E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7910 0.0 42.712578 1 GTATCAA 13860 0.0 33.32128 1 TCAACGC 16145 0.0 27.867945 4 ATCAACG 16335 0.0 27.543972 3 CAACGCA 16605 0.0 27.07121 5 AACGCAG 17130 0.0 26.313593 6 TATCAAC 17805 0.0 25.339083 2 ACGCAGA 20185 0.0 22.249678 7 GTACATG 19850 0.0 22.211412 1 CGCAGAG 20480 0.0 21.92919 8 TACATGG 19895 0.0 21.542284 2 ACATGGG 20015 0.0 20.879848 3 CATGGGG 14780 0.0 18.970497 4 GCAGAGT 25025 0.0 17.913523 9 TATACCG 455 0.0 17.142519 5 AGAGTAC 21835 0.0 17.127642 10-11 GAGTACT 14815 0.0 16.542809 12-13 CAGAGTA 24250 0.0 16.149872 10-11 ATGGGGG 9705 0.0 15.143279 5 AGTACTT 16290 0.0 14.629105 12-13 >>END_MODULE