##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139942_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10839018 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.494448482325616 34.0 31.0 34.0 31.0 34.0 2 32.696741992678675 34.0 31.0 34.0 31.0 34.0 3 32.80384449956629 34.0 31.0 34.0 31.0 34.0 4 36.25895260991356 37.0 37.0 37.0 35.0 37.0 5 36.10796577697352 37.0 35.0 37.0 35.0 37.0 6 36.15241611371067 37.0 36.0 37.0 35.0 37.0 7 36.14320208712634 37.0 36.0 37.0 35.0 37.0 8 36.11154276153061 37.0 36.0 37.0 35.0 37.0 9 37.98525207726382 39.0 38.0 39.0 35.0 39.0 10-11 37.87087700195718 39.0 38.0 39.0 35.0 39.0 12-13 37.894866721321065 39.0 38.0 39.0 35.0 39.0 14-15 39.26656100211292 40.0 39.0 41.0 36.0 41.0 16-17 39.244034653323766 40.0 39.0 41.0 36.0 41.0 18-19 39.282555255466875 40.0 39.0 41.0 36.0 41.0 20-21 39.28209025198111 40.0 39.0 41.0 36.0 41.0 22-23 39.245933170420884 40.0 39.0 41.0 36.0 41.0 24-25 39.25397214865726 40.0 39.0 41.0 36.0 41.0 26-27 39.13493011395704 40.0 39.0 41.0 36.0 41.0 28-29 39.05396172307765 40.0 39.0 41.0 36.0 41.0 30-31 38.95990741869956 40.0 38.5 41.0 35.0 41.0 32-33 38.877700097096955 40.0 38.0 41.0 35.0 41.0 34-35 38.81922165390043 40.0 38.0 41.0 35.0 41.0 36-37 38.79272395588761 40.0 38.0 41.0 35.0 41.0 38-39 38.73445617876963 40.0 38.0 41.0 35.0 41.0 40-41 38.71505438077136 40.0 38.0 41.0 35.0 41.0 42-43 38.69358213705649 40.0 38.0 41.0 35.0 41.0 44-45 38.63744209909012 40.0 38.0 41.0 35.0 41.0 46-47 38.567973943016284 40.0 38.0 41.0 35.0 41.0 48-49 38.54056820014071 40.0 38.0 41.0 34.0 41.0 50-51 38.47997040775921 40.0 38.0 41.0 34.0 41.0 52-53 38.32434460029592 40.0 38.0 41.0 34.0 41.0 54-55 38.19061212342222 40.0 37.0 41.0 34.0 41.0 56-57 38.05775467508775 40.0 37.0 41.0 34.0 41.0 58-59 37.910062479909 39.5 37.0 41.0 33.0 41.0 60-61 37.79002359498456 39.0 36.0 41.0 33.0 41.0 62-63 37.597666377325794 39.0 36.0 41.0 33.0 41.0 64-65 37.3803338467327 39.0 35.5 40.5 33.0 41.0 66-67 37.15627411117683 38.5 35.0 40.0 33.0 41.0 68-69 36.88582248894219 38.0 35.0 40.0 32.0 41.0 70-71 36.58478624649884 37.0 35.0 40.0 32.0 41.0 72-73 36.270124741065146 37.0 35.0 39.0 32.0 41.0 74-75 35.87203627048775 36.0 35.0 39.0 31.5 40.5 76-77 33.882552975646185 34.5 32.0 36.5 29.0 39.0 78-79 34.99814301900811 35.0 34.0 37.0 31.0 39.0 80-81 34.95956924784882 35.0 34.0 37.0 31.0 39.0 82-83 34.6845054830007 35.0 34.0 36.5 31.0 39.0 84-85 34.36565306006894 35.0 34.0 36.0 31.0 37.5 86-87 34.17957040502864 35.0 34.0 36.0 31.0 37.0 88-89 33.98867371371796 35.0 34.0 35.5 31.0 37.0 90-91 33.81759626390213 35.0 34.0 35.0 30.0 36.0 92-93 33.73892600739749 35.0 34.0 35.0 30.5 36.0 94-95 33.666212318520195 35.0 34.0 35.0 30.0 36.0 96-97 33.680402116152266 35.0 34.0 35.0 31.0 36.0 98-99 33.710366380037314 35.0 34.0 35.0 31.0 35.0 100-101 32.472171490706515 34.0 31.5 35.0 28.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 3.0 19 6.0 20 44.0 21 159.0 22 666.0 23 2056.0 24 5395.0 25 12386.0 26 22912.0 27 38952.0 28 59440.0 29 85024.0 30 117606.0 31 157184.0 32 211870.0 33 293583.0 34 439134.0 35 683457.0 36 1257834.0 37 2507710.0 38 3347370.0 39 1568029.0 40 28197.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.15975100327354 20.228963546328643 13.226631785277965 24.38465366511985 2 14.737838038567869 21.781347868747645 40.815282851492526 22.665531241191957 3 18.045822970309672 26.61250308837941 30.655544625906145 24.686129315404774 4 12.182595182810246 18.120063554081447 39.641696843414806 30.0556444196935 5 12.718993020288705 38.28737870061104 36.18841871477473 12.805209564325523 6 29.359687372537486 38.566548429735626 19.263110861722943 12.810653336003943 7 25.98333170034407 32.82719892152592 23.96968064819156 17.21978872993845 8 24.24446568868139 36.71677637217689 21.938269684578437 17.10048825456328 9 25.719673129060215 16.260356796159947 21.496024824389075 36.52394525039077 10-11 23.887213609023352 26.846771169071644 29.711628902521774 19.554386319383227 12-13 24.642822232435375 24.51931413565252 29.57843624467667 21.259427387235434 14-15 21.717917013869155 25.958689423467963 27.085572158948747 25.23782140371414 16-17 21.418430156680245 28.956327039958786 27.80100558925172 21.82423721410925 18-19 21.395926772824122 28.388735406209825 29.254768899739314 20.960568921226734 20-21 22.27505334100289 27.625207483365234 29.021080785064786 21.07865839056709 22-23 21.887917510263883 27.637315112187128 28.845612989985348 21.62915438756365 24-25 21.60431050117052 27.705233118611233 29.00458101502224 21.685875365196008 26-27 21.619192371906845 27.89010018391026 28.863154255817165 21.627553188365734 28-29 21.57759938595947 28.0157932836175 28.81962841251514 21.58697891790789 30-31 21.889654192143873 27.84657121738005 28.712193940752055 21.55158064972402 32-33 21.592655758230666 28.032622238947063 28.704722630623415 21.669999372198856 34-35 21.73709964236272 28.033143417364098 28.737581338448393 21.492175601824794 36-37 21.735418034695332 27.979899597645037 28.666896974179533 21.617785393480105 38-39 21.559181714132688 28.138586966198666 28.71606589571031 21.586165423958334 40-41 21.835465597477448 27.98648474985847 28.575069438620453 21.602980214043626 42-43 21.68440019260939 28.100933534227003 28.422355309961322 21.792310963202286 44-45 21.832065977019415 28.18105681033829 28.25139239434804 21.73548481829425 46-47 21.856319791800882 28.15206729133316 28.049108615618685 21.942504301247272 48-49 21.80174870038659 28.217378057690105 28.074268650510398 21.906604591412908 50-51 21.78572372636606 28.345579639479514 27.97306762079797 21.89562901335646 52-53 21.960198912092537 28.225364558943188 27.848144131922137 21.966292397042146 54-55 21.919131726356454 28.158719724800264 27.950524321228066 21.971624227615212 56-57 21.90067453724319 28.28538048656698 27.87738627059483 21.936558705595004 58-59 21.879952813792837 28.323168674726734 27.862071435232032 21.934807076248394 60-61 21.968125120274312 28.282214928010358 27.86550270289183 21.8841572488235 62-63 21.936200950826024 28.292117265330287 27.838881664737038 21.932800119106656 64-65 21.90524354678568 28.271212880065228 27.844337732826517 21.97920584032257 66-67 21.98781141127615 28.306854204414783 27.651802866979914 22.053531517329155 68-69 21.937930385993898 28.304259714457626 27.739007183844226 22.018802715704254 70-71 21.915950374982838 28.09807834098524 27.826897467234435 22.159073816797495 72-73 21.95203540703333 28.131736262520494 27.79701757661867 22.119210753827506 74-75 21.840307994732303 28.240826533716344 27.766726528325425 22.15213894322593 76-77 21.920747165948665 28.19261610759637 27.69451076257125 22.192125963883715 78-79 21.94071900123843 28.16162758393797 27.69188847536296 22.20576493946064 80-81 21.927322964588992 28.225803361158814 27.645645283804026 22.201228390448165 82-83 21.9719289997553 28.181845256638947 27.762456862693952 22.083768880911794 84-85 22.14874070661735 28.11076553986862 27.6598047734553 22.080688980058735 86-87 21.90914724052775 28.174450450067173 27.786676131398526 22.129726178006553 88-89 22.025202523853167 28.126983762884123 27.72613029808054 22.121683415182165 90-91 22.024270414490555 28.19741614693273 27.719361706483518 22.058951732093192 92-93 22.049389703918028 28.121215431255166 27.764868609910188 22.06452625491662 94-95 21.95420752714764 28.194551427328534 27.787392100356538 22.063848945167287 96-97 21.93741080365029 28.19875903658737 27.839749213947375 22.02408094581497 98-99 22.22888295951366 28.697422847171765 27.854078435644425 21.219615757670148 100-101 26.121869942601162 35.79878787902179 28.580943516142714 9.498398662234335 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1937.0 1 1831.5 2 2669.0 3 3914.0 4 5386.0 5 8851.5 6 11883.0 7 13672.5 8 14561.0 9 14068.0 10 12783.5 11 11559.5 12 12426.0 13 16180.0 14 24434.5 15 35636.5 16 45271.5 17 51532.5 18 54021.0 19 53388.5 20 51505.0 21 50143.0 22 51722.5 23 58690.5 24 70829.5 25 88138.5 26 111303.0 27 137095.5 28 164279.0 29 193349.5 30 220843.0 31 246923.5 32 273595.5 33 298733.5 34 322984.0 35 346796.5 36 371830.0 37 394197.5 38 411230.5 39 426786.5 40 441160.5 41 452598.0 42 460110.5 43 466969.0 44 474433.0 45 480270.5 46 481124.5 47 478894.5 48 473704.0 49 463181.5 50 450734.0 51 432615.0 52 409301.5 53 387730.0 54 365816.5 55 338739.0 56 308994.0 57 278335.0 58 245594.0 59 212697.5 60 179410.0 61 147076.0 62 117285.5 63 91816.5 64 70324.5 65 53252.0 66 40715.5 67 31488.0 68 24241.0 69 17459.5 70 12289.5 71 8762.0 72 6017.0 73 4040.0 74 2752.0 75 1887.0 76 1281.0 77 881.5 78 609.0 79 414.0 80 282.5 81 186.5 82 135.5 83 97.0 84 57.5 85 34.0 86 27.0 87 23.5 88 16.0 89 9.5 90 6.0 91 4.5 92 3.5 93 2.0 94 2.5 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001872863390392008 3 0.0 4 0.0034597230118078963 5 2.8600376897611944E-4 6 4.3361861747992297E-4 7 0.0 8 0.0 9 0.0 10-11 3.044556250390949E-4 12-13 4.843612216531055E-4 14-15 1.8451856062975448E-5 16-17 0.0 18-19 0.0010932724717312953 20-21 0.0 22-23 0.0 24-25 0.0 26-27 5.0783508748036474E-5 28-29 0.0 30-31 4.166943691256511E-5 32-33 9.944345587013094E-4 34-35 6.76993889406465E-4 36-37 3.43156703213639E-4 38-39 0.0013959352360120524 40-41 4.800540425638957E-6 42-43 9.708133697699007E-6 44-45 8.848472126944115E-5 46-47 2.4931869925647677E-5 48-49 3.033584817514705E-5 50-51 1.1270222749805256E-4 52-53 1.0371888200172465E-5 54-55 0.002793081683673839 56-57 0.0025695489930799334 58-59 0.0014183921344061913 60-61 1.3667516877333217E-4 62-63 2.2155250592223696E-5 64-65 9.537721238664979E-5 66-67 4.5496764383858936E-5 68-69 1.6152518541072219E-4 70-71 0.0 72-73 0.0 74-75 1.5041602967985032E-4 76-77 1.8302599811092764E-5 78-79 2.4754970658861586E-4 80-81 0.0 82-83 9.566041013571788E-5 84-85 3.8820136988499406E-5 86-87 0.0015559840092114253 88-89 0.0 90-91 1.0168476056594483E-4 92-93 6.895922530654617E-6 94-95 1.1231581522504053E-4 96-97 3.58200161677225E-5 98-99 7.466263687527905E-6 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 367.0 20-21 816.0 22-23 1691.0 24-25 4461.0 26-27 7039.0 28-29 16697.0 30-31 37345.0 32-33 47404.0 34-35 63747.0 36-37 99647.0 38-39 116312.0 40-41 113345.0 42-43 124353.0 44-45 142295.0 46-47 141027.0 48-49 131251.0 50-51 121205.0 52-53 116279.0 54-55 123455.0 56-57 127498.0 58-59 126053.0 60-61 120791.0 62-63 115068.0 64-65 118028.0 66-67 124304.0 68-69 124838.0 70-71 120909.0 72-73 114209.0 74-75 114994.0 76-77 114592.0 78-79 119800.0 80-81 120203.0 82-83 113284.0 84-85 111339.0 86-87 116134.0 88-89 121455.0 90-91 124922.0 92-93 126492.0 94-95 135502.0 96-97 201525.0 98-99 828256.0 100-101 5990086.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.62471803852483 #Duplication Level Percentage of deduplicated Percentage of total 1 90.19894019489504 77.23258821561653 2 6.817785611274581 11.675419412249953 3 1.6568944432493187 4.256133585684645 4 0.6125224718043457 2.097882557620295 5 0.28969773958689393 1.2402643634262893 6 0.1402429889790919 0.7204959832928814 7 0.08903387389463124 0.5336450243673764 8 0.050378045780679906 0.345088477224209 9 0.03280238983532481 0.2527825842575514 >10 0.109503623657285 1.4199623399279737 >50 0.0015886728127338283 0.08796347521698893 >100 5.084975870038402E-4 0.06815633317885823 >500 6.763639503032548E-5 0.03437110953415647 >1k 3.381024803070949E-5 0.0352465384023691 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.225928031487724E-6 0.0 0.0 0.0 3 0.0 9.225928031487724E-6 0.0 9.225928031487724E-6 0.0 4 0.0 5.535556818892634E-5 0.0 9.225928031487724E-6 0.0 5 0.0 5.535556818892634E-5 0.0 9.225928031487724E-6 0.0 6 9.225928031487724E-6 5.535556818892634E-5 1.8451856062975448E-5 9.225928031487724E-6 0.0 7 9.225928031487724E-6 5.535556818892634E-5 1.8451856062975448E-5 2.767778409446317E-5 0.0 8 9.225928031487724E-6 6.458149622041407E-5 1.8451856062975448E-5 2.767778409446317E-5 0.0 9 9.225928031487724E-6 1.1071113637785269E-4 1.8451856062975448E-5 2.767778409446317E-5 0.0 10-11 1.8451856062975448E-5 1.1071113637785269E-4 2.306482007871931E-5 2.767778409446317E-5 0.0 12-13 1.8451856062975448E-5 1.199370644093404E-4 2.767778409446317E-5 3.2290748110207034E-5 0.0 14-15 1.8451856062975448E-5 1.9835745267698606E-4 2.767778409446317E-5 3.6903712125950896E-5 9.225928031487724E-6 16-17 1.8451856062975448E-5 2.0297041669272993E-4 3.2290748110207034E-5 3.6903712125950896E-5 9.225928031487724E-6 18-19 1.8451856062975448E-5 2.306482007871931E-4 3.6903712125950896E-5 5.535556818892634E-5 9.225928031487724E-6 20-21 1.8451856062975448E-5 2.767778409446317E-4 3.6903712125950896E-5 8.303335228338951E-5 9.225928031487724E-6 22-23 1.8451856062975448E-5 2.9061673299186333E-4 3.6903712125950896E-5 1.2455002842508427E-4 1.3838892047231586E-5 24-25 1.8451856062975448E-5 3.136815530705826E-4 4.612964015743862E-5 2.0297041669272993E-4 1.8451856062975448E-5 26-27 2.767778409446317E-5 3.2290748110207034E-4 4.612964015743862E-5 2.8600376897611944E-4 1.8451856062975448E-5 28-29 2.767778409446317E-5 3.2290748110207034E-4 5.074260417318248E-5 7.795909186607125E-4 1.8451856062975448E-5 30-31 2.767778409446317E-5 4.01327869369716E-4 5.535556818892634E-5 0.002403354252202552 1.8451856062975448E-5 32-33 3.6903712125950896E-5 4.0594083338545985E-4 5.535556818892634E-5 0.005309521582121185 1.8451856062975448E-5 34-35 3.6903712125950896E-5 4.6590936559013003E-4 5.535556818892634E-5 0.008760018665897594 1.8451856062975448E-5 36-37 3.6903712125950896E-5 5.258778977948002E-4 5.535556818892634E-5 0.0137143420188065 1.8451856062975448E-5 38-39 3.6903712125950896E-5 5.35103825826288E-4 5.535556818892634E-5 0.021740899406200817 2.306482007871931E-5 40-41 3.6903712125950896E-5 6.089112500781898E-4 7.380742425190179E-5 0.03101295707784598 2.767778409446317E-5 42-43 3.6903712125950896E-5 6.227501421254213E-4 7.380742425190179E-5 0.0388918996167365 2.767778409446317E-5 44-45 4.151667614169476E-5 6.734927462986038E-4 8.303335228338951E-5 0.04773956459893322 3.6903712125950896E-5 46-47 4.612964015743862E-5 7.196223864560425E-4 8.303335228338951E-5 0.05715923711908219 4.612964015743862E-5 48-49 5.535556818892634E-5 7.242353504717863E-4 9.225928031487724E-5 0.0659100298569483 4.612964015743862E-5 50-51 5.535556818892634E-5 8.164946307866635E-4 9.225928031487724E-5 0.07474846891111353 4.612964015743862E-5 52-53 5.535556818892634E-5 8.303335228338951E-4 1.0148520834636496E-4 0.08272428369433468 5.9968532204670205E-5 54-55 6.919446023615793E-5 8.303335228338951E-4 1.199370644093404E-4 0.09133668751172846 7.380742425190179E-5 56-57 8.303335228338951E-5 8.303335228338951E-4 1.199370644093404E-4 0.09985221908479164 7.380742425190179E-5 58-59 8.303335228338951E-5 8.303335228338951E-4 1.199370644093404E-4 0.1082847173055714 7.842038826764565E-5 60-61 8.303335228338951E-5 8.533983429126144E-4 1.199370644093404E-4 0.11578078383115518 8.303335228338951E-5 62-63 8.303335228338951E-5 8.810761270070775E-4 1.199370644093404E-4 0.1227140687468182 9.225928031487724E-5 64-65 8.303335228338951E-5 0.0010056261554321618 1.3838892047231586E-4 0.12981342036704802 9.225928031487724E-5 66-67 8.303335228338951E-5 0.0010286909755108811 1.3838892047231586E-4 0.1370050312675927 9.225928031487724E-5 68-69 8.303335228338951E-5 0.0010379169035423688 1.3838892047231586E-4 0.1439659939673502 9.225928031487724E-5 70-71 8.303335228338951E-5 0.0010563687596053441 1.3838892047231586E-4 0.15106534558757997 9.225928031487724E-5 72-73 8.303335228338951E-5 0.001060981723621088 1.3838892047231586E-4 0.15714984512434613 1.1071113637785269E-4 74-75 1.0148520834636496E-4 0.0010794335796840636 1.3838892047231586E-4 0.1626254334110341 1.1071113637785269E-4 76-77 1.2455002842508427E-4 0.0011117243277942706 1.3838892047231586E-4 0.16697084551386482 1.1071113637785269E-4 78-79 1.2916299244082813E-4 0.0011255632198415022 1.3838892047231586E-4 0.1709010908552786 1.1071113637785269E-4 80-81 1.2916299244082813E-4 0.0011255632198415022 1.3838892047231586E-4 0.1726263393971668 1.1532410039359655E-4 82-83 1.2916299244082813E-4 0.001130176183857246 1.3838892047231586E-4 0.1731752821150403 1.3838892047231586E-4 84-85 1.2916299244082813E-4 0.0011347891478729899 1.3838892047231586E-4 0.17383954893330744 1.3838892047231586E-4 86-87 1.33775956456572E-4 0.0011347891478729899 1.3838892047231586E-4 0.17414861752236227 1.3838892047231586E-4 88-89 1.3838892047231586E-4 0.0011716928599989408 1.4300188448805972E-4 0.17424087680267714 1.4761484850380358E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10780 0.0 45.584988 1 GTATCAA 19115 0.0 34.085327 1 TCAACGC 22455 0.0 28.180302 4 ATCAACG 22525 0.0 28.128778 3 CAACGCA 23130 0.0 27.356659 5 AACGCAG 23895 0.0 26.514936 6 TATCAAC 24665 0.0 25.936525 2 ACGCAGA 28330 0.0 22.4214 7 CGCAGAG 28535 0.0 22.246042 8 GTACATG 30170 0.0 21.703703 1 TACATGG 29575 0.0 21.506582 2 ACATGGG 30010 0.0 20.895746 3 CATGGGG 21385 0.0 19.187017 4 GCAGAGT 34950 0.0 18.092882 9 GAGTACT 19720 0.0 17.190308 12-13 AGAGTAC 31010 0.0 17.02807 10-11 CAGAGTA 33950 0.0 16.477564 10-11 ACCGAAC 1055 0.0 15.447947 8 ATGGGGG 14220 0.0 14.95678 5 GTACTTT 23055 0.0 14.739583 14-15 >>END_MODULE