##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139941_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23154128 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60460916515621 31.0 31.0 34.0 30.0 34.0 2 31.740790583864786 31.0 31.0 34.0 30.0 34.0 3 31.782708163313256 31.0 31.0 34.0 30.0 34.0 4 35.5486649292083 37.0 35.0 37.0 33.0 37.0 5 35.39460134279296 37.0 35.0 37.0 33.0 37.0 6 35.420056760505084 37.0 35.0 37.0 33.0 37.0 7 35.318667237220076 37.0 35.0 37.0 32.0 37.0 8 35.30323253805974 37.0 35.0 37.0 32.0 37.0 9 36.90077704502627 39.0 37.0 39.0 33.0 39.0 10-11 36.78328920441314 39.0 37.0 39.0 32.0 39.0 12-13 36.707565234156085 39.0 35.0 39.0 32.0 39.0 14-15 37.84540076395881 40.0 37.0 41.0 32.0 41.0 16-17 37.814787691421586 40.0 37.0 41.0 32.0 41.0 18-19 37.83861363727453 40.0 37.0 41.0 32.0 41.0 20-21 37.82248806622204 40.0 37.0 41.0 32.0 41.0 22-23 37.725305551127065 40.0 37.0 41.0 32.0 41.0 24-25 37.61769125842468 39.0 36.0 41.0 32.0 41.0 26-27 37.42407643263081 39.0 36.0 41.0 31.5 41.0 28-29 37.28454677504006 39.0 36.0 41.0 31.0 41.0 30-31 37.100733447695596 39.0 36.0 40.5 31.0 41.0 32-33 36.894954352808696 39.0 35.5 40.0 30.0 41.0 34-35 36.76052499724049 39.0 35.0 40.0 30.0 41.0 36-37 36.601330371781174 38.0 35.0 40.0 30.0 41.0 38-39 36.436738942522936 38.0 35.0 40.0 30.0 41.0 40-41 36.317023272955225 38.0 35.0 40.0 30.0 41.0 42-43 36.123603074278805 38.0 34.5 40.0 29.5 41.0 44-45 35.95687041136282 38.0 34.0 40.0 29.0 41.0 46-47 36.10109608998185 38.0 34.5 40.0 29.0 41.0 48-49 36.507657654562614 38.5 35.0 40.0 30.0 41.0 50-51 36.59314720593691 39.0 35.0 40.0 30.0 41.0 52-53 36.554897137360435 39.0 35.0 40.0 30.0 41.0 54-55 36.444392926850526 38.0 35.0 40.0 30.0 41.0 56-57 36.29854266887199 38.0 34.5 40.0 29.0 41.0 58-59 36.098695798082204 38.0 34.0 40.0 29.0 41.0 60-61 35.92690687539462 38.0 34.0 40.0 28.0 41.0 62-63 35.715692558880626 37.5 34.0 40.0 28.0 41.0 64-65 35.48633698647133 37.0 34.0 40.0 28.0 41.0 66-67 35.237399935753984 37.0 33.5 39.5 28.0 41.0 68-69 34.96960724409091 36.0 33.0 39.0 28.0 41.0 70-71 34.694526638453645 36.0 33.0 39.0 28.0 40.5 72-73 34.39211816466664 35.0 32.5 38.5 27.5 40.0 74-75 34.08080631432902 35.0 32.0 38.0 27.0 40.0 76-77 32.30189331307434 33.5 30.0 36.0 25.5 38.5 78-79 33.36915999219459 35.0 31.5 36.5 26.5 39.0 80-81 33.40089677493842 35.0 32.0 36.0 27.0 39.0 82-83 33.17705615897506 35.0 32.0 36.0 27.0 37.5 84-85 32.975553232396464 34.5 32.0 35.5 27.0 37.0 86-87 32.776367164732406 34.0 32.0 35.0 26.5 37.0 88-89 32.631723506588415 34.0 32.0 35.0 26.0 36.0 90-91 32.51572166057778 34.0 31.5 35.0 26.0 36.0 92-93 32.43780320702034 34.0 31.0 35.0 27.0 36.0 94-95 32.411877986076284 34.0 31.0 35.0 27.0 35.5 96-97 32.507837811889154 34.0 32.0 35.0 27.0 35.0 98-99 32.671610294831424 34.0 32.0 35.0 28.5 35.0 100 31.28682930177226 33.0 29.0 34.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 3.0 18 3.0 19 58.0 20 334.0 21 2010.0 22 9227.0 23 29932.0 24 75025.0 25 150746.0 26 255368.0 27 384407.0 28 521564.0 29 663547.0 30 802900.0 31 957123.0 32 1135242.0 33 1369851.0 34 1697127.0 35 2161335.0 36 2913286.0 37 3973537.0 38 4053455.0 39 1931566.0 40 66479.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.166284819709034 21.482247139689303 14.723443698678699 23.62802434192296 2 14.592710574933745 22.12372250399596 41.36319289238242 21.920374028687874 3 17.71152426902019 27.464294919679116 31.427307476230588 23.3968733350701 4 12.342767916947988 19.058075710148398 39.174483759204485 29.424672613699133 5 12.311973052926026 38.82891638156272 36.29423660437568 12.56487396113557 6 28.729948283951785 39.45084004027273 18.955177236646527 12.864034439128954 7 25.350120088742713 33.37022380502621 23.893865659456733 17.385790446774347 8 24.00605196619799 37.49025227812509 21.520335380369325 16.98336037530759 9 25.417607122084846 16.433162496919014 21.283694706760382 36.86553567423576 10-11 23.729217997548513 27.126843878984936 29.58357196988232 19.56036615358423 12-13 24.6052214806504 24.710468399535944 29.509225182453473 21.175084937360182 14-15 21.79922931417729 26.093352340805136 26.922643455179173 25.184774889838398 16-17 21.34801477919817 29.2667223221352 27.5586411787684 21.82662171989823 18-19 21.383643615671623 28.297544968981125 29.240949140513912 21.077862274833336 20-21 22.240107534166302 27.446078019672687 29.075237829525253 21.23857661663576 22-23 21.94549569913771 27.491239624222374 28.979878189574897 21.583386487065013 24-25 21.743418504557532 27.670505131848138 29.047532053321568 21.538544310272762 26-27 21.762137031429297 27.75422991758466 28.942701305556156 21.540931745429877 28-29 21.60178331583839 27.655182123285304 28.994376371359444 21.748658189516863 30-31 22.12118023461509 27.62821525927181 28.81166150450388 21.43894300160922 32-33 21.962293850043018 27.701705691822998 28.872308076652324 21.463692381481657 34-35 21.704327547343876 27.778154791273213 29.01298881650764 21.50452884487527 36-37 21.888217586065252 27.707423902756783 28.817265721969783 21.58709278920818 38-39 21.633818450270798 27.776344301292422 28.9134028009006 21.67643444753618 40-41 21.8489100178404 27.66488226915537 28.862539813683814 21.623667899320413 42-43 21.888161453534583 27.68788847778821 28.639153643850257 21.78479642482695 44-45 21.78533468477896 27.921488190865144 28.44891031137645 21.844266812979445 46-47 22.066159846535253 27.75051083703286 28.04239360097427 22.140935715457623 48-49 21.909673213503506 27.891658960468135 28.084193806837117 22.114474019191242 50-51 21.754552401947137 28.030486335839015 28.06023258758419 22.15472867462966 52-53 21.93787170404055 27.93035739600647 28.075715867481705 22.056055032471274 54-55 21.92770547999959 27.831417364709026 28.030627685534608 22.210249469756764 56-57 22.010785077598584 27.97293560137498 27.852915365736596 22.163363955289835 58-59 21.822452323177803 28.04246146081299 27.943545870948324 22.191540345060883 60-61 22.157423095137826 28.127752537863373 27.882734170684525 21.832090196314272 62-63 21.75359056902895 28.263362795632872 27.861430185087432 22.121616450250745 64-65 21.73950449873788 28.2050295131193 27.80875971082033 22.24670627732249 66-67 21.87108392394503 28.180157324663956 27.858811008024563 22.089947743366448 68-69 21.852573505115902 28.284781243873418 27.73795159474513 22.124693656265546 70-71 21.87453407141256 27.95169710101445 27.63127793658914 22.542490890983853 72-73 21.972037761340975 27.95606307174791 27.542574034440992 22.529325132470127 74-75 21.818235170713567 28.141315696924014 27.774051699558832 22.26639743280358 76-77 21.988299369133166 27.815055851870113 27.723560172214096 22.473084606782624 78-79 21.923195598905437 27.853913605517523 27.401379070531906 22.821511725045134 80-81 22.26785894630317 28.079871802128586 27.349198621724724 22.303070629843518 82-83 22.249078004352686 27.76355776842135 27.54380696818966 22.443557259036307 84-85 22.112091065068025 27.710933429828543 27.475094114440303 22.701881390663132 86-87 21.92835969921621 28.06190520094667 27.57173143309472 22.438003666742404 88-89 22.288516926713612 27.98192396118413 27.555673350863728 22.17388576123853 90-91 22.348064466629502 27.94094695274706 27.623583626662217 22.08740495396122 92-93 22.129459451270918 27.58527334886735 27.6382685729692 22.64699862689253 94-95 22.18057065854534 27.844843493355253 27.80965517250432 22.164930675595087 96-97 22.452332140935997 27.74643019888127 27.929299571056383 21.87193808912635 98-99 23.052759478618196 29.889078345244513 28.259905897821174 18.79825627831612 100 22.37212170812454 30.47709438142888 22.05998698079765 25.090796929648928 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4043.0 1 3886.5 2 6357.5 3 9505.5 4 12625.0 5 20829.5 6 28152.0 7 33865.5 8 38054.0 9 37349.0 10 33506.0 11 29183.5 12 30386.5 13 39002.0 14 62196.5 15 96217.0 16 123158.0 17 137495.5 18 141859.0 19 138000.0 20 128593.0 21 117522.5 22 111040.5 23 116878.0 24 137895.5 25 173859.0 26 223132.5 27 279701.5 28 340483.0 29 412035.5 30 482796.5 31 548517.5 32 620450.0 33 690238.5 34 755918.0 35 810392.0 36 860141.0 37 900706.0 38 911890.5 39 911294.0 40 915796.0 41 910784.0 42 896065.0 43 891231.0 44 888289.0 45 885787.5 46 882000.0 47 875384.5 48 875006.0 49 881463.0 50 886482.0 51 867104.5 52 827685.0 53 791766.0 54 755395.5 55 711348.0 56 662353.0 57 606093.0 58 546428.0 59 484357.5 60 415010.0 61 345114.5 62 278868.0 63 220295.0 64 170559.0 65 130072.0 66 100472.0 67 78829.0 68 62154.0 69 47020.5 70 34700.5 71 25731.0 72 18978.0 73 14019.5 74 10342.0 75 7658.5 76 5576.0 77 3833.5 78 2656.0 79 1893.0 80 1335.5 81 961.0 82 743.5 83 570.5 84 428.0 85 313.5 86 234.0 87 188.5 88 137.5 89 94.5 90 73.0 91 55.0 92 40.0 93 21.5 94 7.5 95 3.0 96 1.5 97 1.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.13288343227609348 3 0.0 4 2.548141739563675E-4 5 0.0 6 0.0 7 4.318884304345213E-6 8 0.0 9 3.886995873910691E-5 10-11 8.205880178255903E-5 12-13 2.5913305826071272E-5 14-15 3.2607576497806353E-4 16-17 0.0015915088661512108 18-19 4.318884304345213E-6 20-21 4.6431144577816283E-4 22-23 0.0023651321207081356 24-25 0.0 26-27 0.004337085647517698 28-29 0.0033432159084105123 30-31 0.008899924650918071 32-33 0.009626936311387464 34-35 0.002980089983860759 36-37 0.007739539573867808 38-39 2.347495248038452E-4 40-41 2.6811870821746975E-5 42-43 0.002195654724832336 44-45 2.5105660023123223E-5 46-47 0.0 48-49 1.2869646972713892E-4 50-51 0.0 52-53 1.672022233500676E-5 54-55 0.0027490167261511283 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 2.229928973351719E-4 70-71 4.922869282386692E-4 72-73 4.831402018613745E-4 74-75 4.790258005759752E-4 76-77 0.0012104145847628349 78-79 0.007495825273045009 80-81 8.809278687394595E-4 82-83 4.564673884142936E-4 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 3.483572129006839E-4 94-95 1.312627983279351E-4 96-97 4.0777321774050004E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 980.0 20-21 3065.0 22-23 6245.0 24-25 13637.0 26-27 16682.0 28-29 33137.0 30-31 77170.0 32-33 90814.0 34-35 120735.0 36-37 168094.0 38-39 193846.0 40-41 214472.0 42-43 241228.0 44-45 280826.0 46-47 264626.0 48-49 237569.0 50-51 210229.0 52-53 195136.0 54-55 210886.0 56-57 239409.0 58-59 157724.0 60-61 260506.0 62-63 251770.0 64-65 258941.0 66-67 280867.0 68-69 268393.0 70-71 267704.0 72-73 259027.0 74-75 261597.0 76-77 245410.0 78-79 271284.0 80-81 285583.0 82-83 274633.0 84-85 276892.0 86-87 293247.0 88-89 324535.0 90-91 356834.0 92-93 396098.0 94-95 462773.0 96-97 1017884.0 98-99 1537232.0 100-101 1.2326408E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.69352212728765 #Duplication Level Percentage of deduplicated Percentage of total 1 88.6480188270305 73.30616906413259 2 7.637842377298217 12.632001752636906 3 1.9554826769246532 4.851172500413894 4 0.7910241555994352 2.616502940571237 5 0.3666327652110423 1.5159077341283993 6 0.1996363421575409 0.9905179366569224 7 0.11901949305053135 0.6889498757506871 8 0.0730209102023805 0.4830685002860189 9 0.049575870278011795 0.36896429932328795 >10 0.15367083689325667 1.9566340740666284 >50 0.004315791623196335 0.2412838023256721 >100 0.0016581774012765149 0.2335274488042971 >500 4.076483411124997E-5 0.026218231549633514 >1k 6.1011495870342227E-5 0.08908183935381736 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.159442152172606E-5 0.0 4.318884304345213E-6 0.0 3 0.0 2.5913305826071272E-5 0.0 8.637768608690425E-6 0.0 4 0.0 6.91021488695234E-5 0.0 2.5913305826071272E-5 4.318884304345213E-6 5 0.0 7.342103317386861E-5 0.0 3.0232190130416485E-5 4.318884304345213E-6 6 3.45510744347617E-5 7.773991747821383E-5 0.0 3.0232190130416485E-5 8.637768608690425E-6 7 3.45510744347617E-5 7.773991747821383E-5 0.0 3.0232190130416485E-5 8.637768608690425E-6 8 3.45510744347617E-5 1.0365322330428509E-4 0.0 3.0232190130416485E-5 1.2956652913035636E-5 9 3.45510744347617E-5 2.0730644660857018E-4 0.0 4.318884304345212E-5 2.159442152172606E-5 10-11 3.8869958739106913E-5 2.0730644660857018E-4 0.0 5.1826611652142544E-5 2.159442152172606E-5 12-13 3.8869958739106913E-5 2.0730644660857018E-4 0.0 6.69427067173508E-5 2.159442152172606E-5 14-15 4.318884304345212E-5 2.85046364086784E-4 0.0 7.342103317386861E-5 5.182661165214255E-5 16-17 8.205880178255903E-5 2.958435748476471E-4 0.0 8.421824393473164E-5 6.91021488695234E-5 18-19 8.421824393473163E-5 3.3039464928240873E-4 0.0 1.058126654564577E-4 7.773991747821383E-5 20-21 8.637768608690424E-5 3.6926460802151563E-4 0.0 1.7923369863032633E-4 9.501545469559466E-5 22-23 8.853712823907685E-5 4.1893177752148555E-4 0.0 5.549766331083598E-4 1.1660987621732073E-4 24-25 9.069657039124945E-5 4.7939615778231856E-4 0.0 0.0019089468625205837 1.4684206634773723E-4 26-27 9.069657039124945E-5 5.096283479127351E-4 0.0 0.004819874883649256 1.5116095065208243E-4 28-29 9.069657039124945E-5 5.139472322170803E-4 0.0 0.017271218333076502 1.5547983495642765E-4 30-31 9.285601254342205E-5 5.614549595648776E-4 0.0 0.021292099620421896 1.7059593002163588E-4 32-33 9.501545469559466E-5 5.70092728173568E-4 0.0 0.02958867636906905 2.116253309129154E-4 34-35 9.933433899993988E-5 6.456732034996092E-4 0.0 0.039686227872628155 2.2890086813029625E-4 36-37 1.058126654564577E-4 7.23413120977823E-4 0.0 0.057603119409204276 2.2890086813029625E-4 38-39 1.079721076086303E-4 7.320508895865135E-4 0.0 0.10463576948352363 2.3106031028246885E-4 40-41 1.1229099191297551E-4 8.205880178255903E-4 0.0 0.15264664685277718 2.3753863673898668E-4 42-43 1.2092876052166594E-4 8.55139092260352E-4 0.0 0.18315524557867174 2.3969807889115928E-4 44-45 1.2308820267383855E-4 9.695895263255002E-4 0.0 0.22090661328295325 2.461764053476771E-4 46-47 1.2524764482601115E-4 0.0010451700016515413 0.0 0.2604092885726467 2.504952896520223E-4 48-49 1.2524764482601115E-4 0.0010473294438037139 0.0 0.2951935827598431 2.5913305826071276E-4 50-51 1.4900150849990983E-4 0.001129388245586273 0.0 0.3327678762076464 2.612925004128854E-4 52-53 1.5979871926077285E-4 0.0011358665720427909 0.0 0.41762747446157333 2.7208971117374835E-4 54-55 1.5979871926077285E-4 0.001140185456347136 0.0 0.5203348621032068 2.8288692193461143E-4 56-57 1.5979871926077285E-4 0.0011531421092601717 0.0 0.6198462753596249 2.9584357484764703E-4 58-59 1.6195816141294545E-4 0.0011531421092601717 0.0 0.8761677399382088 3.0232190130416485E-4 60-61 1.7491481432598108E-4 0.0011812148572384155 0.0 1.0940273803444467 3.0232190130416485E-4 62-63 1.9003090939118933E-4 0.0012265631424340402 0.0 1.1060511542477436 3.044813434563375E-4 64-65 1.9003090939118933E-4 0.0013561296715643967 0.0 1.1154058576509556 3.0664078560851005E-4 66-67 1.9219035154336193E-4 0.0013734052087817775 0.0 1.1233785180767768 3.152785542172005E-4 68-69 1.9434979369553455E-4 0.0014122751675208845 0.0 1.1310488566012937 3.368729757389265E-4 70-71 2.0298756230422495E-4 0.0014446667998034735 0.0 1.137144961796877 3.541485129563074E-4 72-73 2.3321975243464145E-4 0.0014489856841078186 0.0 1.142083605998896 3.7142405017368826E-4 74-75 2.3321975243464145E-4 0.0015051311800643066 0.0 1.1458669486495021 3.822212609345513E-4 76-77 2.3537919458681408E-4 0.0016087844033685914 0.0 1.149430028200587 3.843807030867239E-4 78-79 2.461764053476771E-4 0.0016454949199555258 0.0 1.1518421250845639 3.8654014523889653E-4 80-81 2.461764053476771E-4 0.0016454949199555258 0.0 1.1525914515113675 4.0381568245627733E-4 82-83 2.4833584749984973E-4 0.001649813804259871 0.0 1.153245762483476 4.3620731473886646E-4 84-85 2.504952896520223E-4 0.0016584515728685614 0.0 1.1535372871740193 4.3620731473886646E-4 86-87 2.526547318041949E-4 0.0016800459943902876 0.0 1.1536906075668236 4.3620731473886646E-4 88 2.6345194256505796E-4 0.0017318726060424302 0.0 1.1537078831040408 4.4052619904321166E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 28555 0.0 50.46534 1 GTATCAA 52045 0.0 35.195263 1 TCAACGC 65715 0.0 27.300253 4 ATCAACG 66365 0.0 27.032866 3 CAACGCA 67330 0.0 26.621038 5 AACGCAG 68700 0.0 26.16168 6 TATCAAC 69085 0.0 26.146332 2 ACGCAGA 80385 0.0 22.312952 7 CGCAGAG 81395 0.0 22.0059 8 GTACATG 75780 0.0 21.27203 1 TACATGG 75190 0.0 21.019112 2 ACATGGG 75420 0.0 20.378235 3 GCAGAGT 94225 0.0 18.861975 9 CATGGGG 51425 0.0 18.430433 4 GTGGTAT 13675 0.0 18.377363 1 GAGTACT 54905 0.0 17.69906 12-13 AGAGTAC 86960 0.0 17.67691 10-11 TGGTATC 13445 0.0 17.136637 2 CAGAGTA 93205 0.0 17.050385 10-11 GTACTTT 61900 0.0 15.663585 14-15 >>END_MODULE