##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139934_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14015043 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.86243124619739 31.0 31.0 34.0 30.0 34.0 2 32.00080963005251 33.0 31.0 34.0 30.0 34.0 3 32.06600579106322 33.0 31.0 34.0 30.0 34.0 4 35.7632863488182 37.0 35.0 37.0 35.0 37.0 5 35.62031568508209 37.0 35.0 37.0 33.0 37.0 6 35.6190416968396 37.0 35.0 37.0 33.0 37.0 7 35.49524757077092 37.0 35.0 37.0 33.0 37.0 8 35.49226142224465 37.0 35.0 37.0 33.0 37.0 9 37.09326435887496 39.0 37.0 39.0 33.0 39.0 10-11 36.96874044553413 39.0 37.0 39.0 33.0 39.0 12-13 36.92759076800549 39.0 37.0 39.0 33.0 39.0 14-15 38.092710061610234 40.0 37.0 41.0 33.0 41.0 16-17 38.08910086825991 40.0 37.0 41.0 33.0 41.0 18-19 38.11465194933758 40.0 37.0 41.0 33.0 41.0 20-21 38.099029208598495 40.0 37.0 41.0 33.0 41.0 22-23 38.01127626024186 40.0 37.0 41.0 33.0 41.0 24-25 37.920534287286834 40.0 37.0 41.0 33.0 41.0 26-27 37.75090438123042 40.0 37.0 41.0 32.0 41.0 28-29 37.61434688934288 39.5 37.0 41.0 32.0 41.0 30-31 37.47696019481031 39.0 36.0 41.0 32.0 41.0 32-33 37.62872588625281 39.5 37.0 41.0 32.0 41.0 34-35 37.59410403923114 40.0 36.5 41.0 32.0 41.0 36-37 37.466961857159646 39.5 36.0 41.0 31.5 41.0 38-39 37.30695060715041 39.0 36.0 41.0 31.0 41.0 40-41 37.24847454225305 39.0 36.0 41.0 31.0 41.0 42-43 37.138852898766956 39.0 36.0 40.0 31.0 41.0 44-45 37.20372157018459 39.0 36.0 40.5 31.0 41.0 46-47 37.35559075265929 39.0 36.0 41.0 31.0 41.0 48-49 37.28453263000037 39.0 36.0 41.0 31.0 41.0 50-51 37.143308501719304 39.0 36.0 41.0 31.0 41.0 52-53 37.004286789888084 39.0 35.0 41.0 31.0 41.0 54-55 36.87156120620975 39.0 35.0 40.0 31.0 41.0 56-57 36.71643421647674 39.0 35.0 40.0 30.0 41.0 58-59 36.57590692498522 38.0 35.0 40.0 30.0 41.0 60-61 36.335607505409726 38.0 35.0 40.0 30.0 41.0 62-63 36.072467349776474 38.0 34.0 40.0 29.0 41.0 64-65 35.84643591544351 37.0 34.0 40.0 29.0 41.0 66-67 35.58634584876019 37.0 34.0 39.5 29.0 41.0 68-69 35.29778262019311 36.0 34.0 39.0 29.0 41.0 70-71 34.98809958144689 36.0 33.5 39.0 29.0 40.0 72-73 34.65815734146603 35.5 33.0 38.5 28.0 40.0 74-75 34.32354664525239 35.0 33.0 37.5 28.0 40.0 76-77 33.2021333639404 34.5 31.5 36.0 26.5 39.0 78-79 33.58858693358292 35.0 32.0 36.5 27.5 39.0 80-81 33.47713356873929 35.0 32.0 36.0 28.0 38.5 82-83 33.24946916657229 35.0 32.0 36.0 27.0 37.5 84-85 33.045235189943654 34.5 32.0 35.0 27.0 37.0 86-87 32.8421196110585 34.0 32.0 35.0 27.0 36.5 88-89 32.62228183053875 34.0 32.0 35.0 27.0 36.0 90-91 32.49608488964337 34.0 32.0 35.0 27.0 36.0 92-93 32.427534596372695 34.0 31.0 35.0 27.0 35.5 94-95 32.396594538363786 34.0 31.0 35.0 27.0 35.0 96-97 32.30268907427528 34.0 31.0 35.0 27.0 35.0 98-99 32.46152889268634 34.0 31.0 35.0 27.0 35.0 100-101 31.689106849019417 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 6.0 19 15.0 20 175.0 21 755.0 22 3491.0 23 11814.0 24 30514.0 25 62868.0 26 110992.0 27 171757.0 28 241268.0 29 316581.0 30 395772.0 31 485906.0 32 594855.0 33 740806.0 34 957573.0 35 1272367.0 36 1828012.0 37 2693945.0 38 2745634.0 39 1300707.0 40 49228.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.38754543956804 21.838505953923935 15.077106791609559 24.696841814898463 2 14.21692563656819 22.164736781303848 41.00617336409276 22.612164218035197 3 17.49097737338373 26.642073092462148 31.286161590799257 24.580787943354864 4 12.51037902630766 18.721283980363097 38.28985041287422 30.478486580455016 5 12.905447382501785 38.111613357162014 35.938441287693514 13.044497972642683 6 30.188555254521876 38.35968965632143 18.293764778317126 13.157990310839573 7 25.988939170575502 32.810916099222815 23.572763922308337 17.62738080789335 8 23.928132079223733 37.86977321439542 21.010395758329103 17.191698948051748 9 25.245994607365812 16.541954241595977 21.45387638125691 36.7581747697813 10-11 24.20265496152955 26.877991027212687 29.121662345238615 19.797691666019148 12-13 24.680106225860314 24.502818150468748 29.2722683762012 21.544807247469734 14-15 21.829676155827705 25.95724465490402 26.709222369135794 25.50385682013248 16-17 21.566455415085063 28.9391548780835 27.537496674109384 21.956893032722054 18-19 21.593240396153483 28.199540885503392 29.10375991190881 21.10345880643431 20-21 22.292847940132848 27.455707005849934 28.90207220294738 21.34937285106984 22-23 22.069891951313437 27.39506351867452 28.755980700759288 21.77906382925276 24-25 21.861402865004134 27.526891023331352 28.832697822559595 21.77900828910492 26-27 21.865700543881488 27.62862186242613 28.73899866016773 21.766678933524652 28-29 21.789521279056867 27.73811040167126 28.752154237991512 21.720214081280357 30-31 22.08074726275417 27.56402249868434 28.619926059845437 21.735304178716053 32-33 21.89154176967676 27.761074451345337 28.56344890043368 21.783934878544226 34-35 21.99687069223956 27.725797163305643 28.594206364136177 21.68312578031862 36-37 21.937432003246084 27.716207294304994 28.56653871357373 21.77982198887519 38-39 21.823329802388866 27.76275340614384 28.63009825766154 21.78381853380575 40-41 22.030436583405802 27.606707442809707 28.489188960688523 21.87366701309597 42-43 21.957032080885106 27.76993875409651 28.258933630233646 22.014095534784733 44-45 22.027496709007746 27.84369938495952 28.09958433147243 22.02921957456031 46-47 22.126714569415107 27.762783000306428 27.89683942610614 22.213663004172325 48-49 22.04175432417774 27.946592603637672 27.841520832206562 22.17013223997802 50-51 22.036486732369358 28.02129374642515 27.764639295218064 22.177580225987427 52-53 22.187925515073818 27.880718279749715 27.66612079038802 22.265235414788435 54-55 22.1225807034845 27.814939537610133 27.698239020802056 22.364240738103312 56-57 22.15091285468726 27.85376927369285 27.69591981374108 22.299398057878804 58-59 22.08843857794932 27.92986971768969 27.71899481312946 22.262696891231528 60-61 22.180067270042944 27.872094146862608 27.702441262681482 22.245397320412966 62-63 22.12799767346018 28.02820971090175 27.614661273480507 22.22913134215757 64-65 22.09809184954606 28.001144834722382 27.59031901768097 22.31044429805059 66-67 22.14814729159508 28.025306838288422 27.433218954578148 22.39332691553835 68-69 22.104894461516146 27.985080329609552 27.48280785079464 22.427217358079666 70-71 22.11811304311295 27.793396522748242 27.540853603767108 22.5476368303717 72-73 22.13668003565937 27.792899489568633 27.500294812425256 22.570125662346737 74-75 22.065228817502568 27.848030492883595 27.513807207318308 22.57293348229553 76-77 22.27198744621544 27.800376690784063 27.39406525794012 22.533570605060376 78-79 22.249285997724705 27.773998183333948 27.355765980407458 22.62094983853389 80-81 22.202337275242208 27.818681728931793 27.357950860728813 22.621030135097183 82-83 22.261819583404765 27.76046269767212 27.460852462282737 22.516865256640372 84-85 22.3164572852143 27.78223856548547 27.412748542518194 22.488555606782032 86-87 22.193373918771282 27.783597727107214 27.481695478297834 22.541332875823667 88-89 22.213281866905838 27.783591709317708 27.504531523562083 22.49859490021438 90-91 22.275752304607753 27.74281834342085 27.55726864361628 22.42416070835512 92-93 22.293213661862428 27.63308195971848 27.625972763427036 22.447731614992055 94-95 22.10558824812936 27.65216666805162 27.725644475822076 22.516600607996942 96-97 22.01705898789827 27.677684653194 27.802627162732335 22.50262919617539 98-99 22.144411274327027 28.316137047948043 27.905581950366997 21.633869727357936 100-101 25.706358572139383 35.66634471794522 28.8459395782684 9.781357131646997 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3054.0 1 2812.0 2 3873.0 3 5511.0 4 7365.5 5 11483.5 6 15054.0 7 17767.0 8 19416.5 9 19304.5 10 18225.0 11 17124.5 12 18928.5 13 24787.5 14 38496.5 15 57555.0 16 72203.0 17 79007.5 18 80298.0 19 78627.5 20 75532.5 21 72777.0 22 73170.5 23 79759.5 24 93589.5 25 114699.0 26 141382.5 27 169374.0 28 200104.0 29 233067.5 30 262703.5 31 292598.0 32 324929.5 33 355273.0 34 384373.5 35 413430.0 36 446220.5 37 476276.5 38 498405.5 39 516074.0 40 532459.0 41 549740.0 42 562528.5 43 573975.5 44 585883.5 45 595207.0 46 601847.0 47 605518.5 48 602065.0 49 593114.0 50 582471.0 51 566009.0 52 542034.5 53 513391.0 54 483156.5 55 448634.5 56 411460.5 57 372790.5 58 331301.5 59 287612.0 60 241954.0 61 197902.0 62 157493.0 63 122669.0 64 93095.5 65 69425.5 66 52011.0 67 39356.5 68 29816.5 69 21519.5 70 15108.5 71 10793.5 72 7455.0 73 5066.0 74 3502.0 75 2374.5 76 1592.5 77 1055.5 78 735.5 79 518.5 80 366.0 81 272.0 82 211.0 83 148.0 84 96.0 85 71.0 86 57.5 87 48.0 88 33.0 89 21.5 90 12.5 91 7.5 92 8.0 93 5.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0034248913827806308 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 1.462714028062561E-4 20-21 0.001958703816154419 22-23 3.17570954717843E-4 24-25 1.0707546078853797E-5 26-27 2.356716628106974E-4 28-29 0.003479887696092476 30-31 3.5420393559928444E-4 32-33 6.099956762071187E-5 34-35 0.0020028782368907835 36-37 0.055381659407250684 38-39 0.033808925855846175 40-41 0.04267418513617717 42-43 8.282377522206798E-4 44-45 0.0024847683139341864 46-47 0.001398024060146034 48-49 5.420004197620273E-4 50-51 3.88623059920818E-6 52-53 9.539494449191945E-4 54-55 0.0022282549869099932 56-57 0.001254698454872926 58-59 0.003848466919202877 60-61 0.0014449164596098644 62-63 1.3298295096232903E-4 64-65 7.238279184973131E-4 66-67 4.224274318741893E-4 68-69 1.4720488872630927E-4 70-71 0.0011161702038276202 72-73 0.0016992681595458486 74-75 6.654904236607107E-4 76-77 0.0010943243191049714 78-79 1.4016744309306936E-4 80-81 0.0020959155596018504 82-83 0.002538882379140736 84-85 0.0038332271609781213 86-87 0.004044646887290877 88-89 0.07236191922299089 90-91 6.427958420829345E-4 92-93 4.81797709308851E-5 94-95 3.301877629223246E-5 96-97 0.008350127827777644 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 428.0 20-21 1448.0 22-23 2760.0 24-25 6044.0 26-27 7495.0 28-29 13157.0 30-31 37935.0 32-33 49878.0 34-35 70599.0 36-37 103787.0 38-39 109212.0 40-41 118111.0 42-43 134804.0 44-45 157439.0 46-47 157650.0 48-49 144557.0 50-51 133037.0 52-53 122279.0 54-55 136169.0 56-57 141595.0 58-59 148515.0 60-61 150747.0 62-63 147378.0 64-65 159612.0 66-67 169639.0 68-69 170024.0 70-71 169101.0 72-73 164951.0 74-75 170804.0 76-77 169349.0 78-79 180602.0 80-81 182221.0 82-83 177781.0 84-85 182315.0 86-87 194216.0 88-89 207411.0 90-91 223865.0 92-93 241850.0 94-95 315423.0 96-97 389856.0 98-99 1169341.0 100-101 7281658.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.8910943057758 #Duplication Level Percentage of deduplicated Percentage of total 1 90.01408415023006 76.41394106445219 2 6.861928952723995 11.65033315690452 3 1.6788915760872043 4.275688293443743 4 0.6397618211139752 2.1724032435768534 5 0.30490932491813716 1.2942043128168008 6 0.16426923424955325 0.8366997033729842 7 0.09687867200015161 0.5756895536688235 8 0.0641978339208711 0.4359859498882561 9 0.03868729914060402 0.29557864438026976 >10 0.13239940322612276 1.7448094797527334 >50 0.0032588736407600533 0.18814615536871282 >100 6.892486203713297E-4 0.0854519434818454 >500 2.9079393310870313E-5 0.01791906926939317 >1k 1.4530734860642767E-5 0.013149429622905941 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.281114228475788E-5 0.0 3.5675951903964906E-5 0.0 3 0.0 4.281114228475788E-5 0.0 4.281114228475788E-5 0.0 4 0.0 7.848709418872279E-5 0.0 7.848709418872279E-5 0.0 5 0.0 7.848709418872279E-5 0.0 7.848709418872279E-5 0.0 6 7.1351903807929805E-6 7.848709418872279E-5 0.0 7.848709418872279E-5 0.0 7 7.1351903807929805E-6 7.848709418872279E-5 0.0 9.275747495030876E-5 0.0 8 7.1351903807929805E-6 8.562228456951577E-5 0.0 9.275747495030876E-5 0.0 9 3.5675951903964906E-5 1.2843342685427364E-4 0.0 1.1416304609268769E-4 0.0 10-11 3.5675951903964906E-5 1.2843342685427364E-4 0.0 1.462714028062561E-4 0.0 12-13 4.994633266555087E-5 1.2843342685427364E-4 0.0 1.7481216432942804E-4 0.0 14-15 5.7081523046343844E-5 1.6767697394863505E-4 0.0 2.0335292585259995E-4 0.0 16-17 6.778430861753332E-5 1.81947354710221E-4 0.0 2.532992585181508E-4 0.0 18-19 7.135190380792981E-5 2.0335292585259995E-4 0.0 2.925428056125122E-4 0.0 20-21 8.562228456951578E-5 2.3546128256616837E-4 0.0 3.389215430876666E-4 0.0 22-23 9.989266533110173E-5 2.640020440893403E-4 0.0 5.101661122266981E-4 7.1351903807929805E-6 24-25 1.1416304609268769E-4 3.353539478972701E-4 0.0 0.0011844416032116348 7.1351903807929805E-6 26-27 1.2843342685427364E-4 3.8530028056282096E-4 0.0 0.003499810881778957 7.1351903807929805E-6 28-29 1.2843342685427364E-4 3.8530028056282096E-4 0.0 0.019083066673430828 7.1351903807929805E-6 30-31 1.462714028062561E-4 4.209762324667859E-4 0.0 0.02905449523058902 7.1351903807929805E-6 32-33 1.6410937875823857E-4 4.209762324667859E-4 0.0 0.03719574745507381 7.1351903807929805E-6 34-35 1.6767697394863505E-4 4.709225651323368E-4 0.0 0.048783296633481604 7.1351903807929805E-6 36-37 1.8551494990061751E-4 5.31571683369077E-4 0.0 0.06541185781591966 7.1351903807929805E-6 38-39 1.8551494990061751E-4 5.494096593210595E-4 0.0 0.09496938396835458 7.1351903807929805E-6 40-41 1.926501402814105E-4 6.171939679385928E-4 0.0 0.15039197525116405 7.1351903807929805E-6 42-43 2.0335292585259995E-4 6.421671342713682E-4 0.0 0.17667444901881502 7.1351903807929805E-6 44-45 2.1048811623339291E-4 7.063838476985051E-4 0.0 0.21582523863822609 7.1351903807929805E-6 46-47 2.1405571142378942E-4 7.49194989983263E-4 0.0 0.26078407322760266 7.1351903807929805E-6 48-49 2.1762330661418593E-4 7.527625851736594E-4 0.0 0.29851495996123595 7.1351903807929805E-6 50-51 2.2832609218537538E-4 8.740608216471402E-4 0.0 0.33492226887923215 7.1351903807929805E-6 52-53 2.3546128256616837E-4 8.847636072183297E-4 0.0 0.3814900888994775 7.1351903807929805E-6 54-55 2.3546128256616837E-4 8.883312024087261E-4 0.0 0.48044447669550494 7.1351903807929805E-6 56-57 2.4616406813735784E-4 8.990339879799156E-4 0.0 0.5800124908642806 7.1351903807929805E-6 58-59 2.497316633277543E-4 9.061691783607085E-4 0.0 0.6621135589808751 7.1351903807929805E-6 60-61 2.497316633277543E-4 9.31142344693484E-4 0.0 0.7075147753738608 7.1351903807929805E-6 62-63 2.6043444889894377E-4 9.703858917878453E-4 0.0 0.7324058870172571 7.1351903807929805E-6 64-65 2.7827242485092623E-4 0.001084548937880533 0.0 0.7511250589812675 7.1351903807929805E-6 66-67 2.8540761523171925E-4 0.001105954509022912 0.0 0.7618813584803129 7.1351903807929805E-6 68-69 2.925428056125122E-4 0.0011309276753556875 0.0 0.7722523576987955 7.1351903807929805E-6 70-71 2.996779959933052E-4 0.0011737388176404455 0.0 0.7820311361156722 7.1351903807929805E-6 72-73 2.996779959933052E-4 0.0011951443887828243 0.0 0.7904934719072927 7.1351903807929805E-6 74-75 2.996779959933052E-4 0.0012094147695444102 0.0 0.7984991555145424 7.1351903807929805E-6 76-77 2.996779959933052E-4 0.0012308203406867892 0.0 0.8060303489614695 7.1351903807929805E-6 78-79 3.0324559118370166E-4 0.0012415231262579787 0.0 0.8128515909655075 7.1351903807929805E-6 80-81 3.068131863740982E-4 0.0012415231262579787 0.0 0.8176000601639253 7.1351903807929805E-6 82-83 3.068131863740982E-4 0.0012415231262579787 0.0 0.8214209546128399 7.1351903807929805E-6 84-85 3.068131863740982E-4 0.001259361102209961 0.0 0.824895792328286 7.1351903807929805E-6 86-87 3.103807815644947E-4 0.0012736314829715472 0.0 0.8254559047731784 7.1351903807929805E-6 88-89 3.1394837675489116E-4 0.0012914694589235296 0.0 0.8255201214866055 7.1351903807929805E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15925 0.0 46.436413 1 GTATCAA 27580 0.0 32.676826 1 TCAACGC 34160 0.0 25.634428 4 ATCAACG 34340 0.0 25.476093 3 CAACGCA 34815 0.0 25.104872 5 TATCAAC 36325 0.0 24.526878 2 AACGCAG 36075 0.0 24.319283 6 ACGCAGA 42145 0.0 20.76784 7 CGCAGAG 42665 0.0 20.562944 8 GTACATG 38475 0.0 19.808537 1 TACATGG 37850 0.0 19.678988 2 GTGGTAT 8070 0.0 18.867666 1 ACATGGG 38765 0.0 18.71468 3 TGGTATC 7685 0.0 17.349669 2 CATGGGG 29145 0.0 17.14054 4 GCAGAGT 50445 0.0 17.130539 9 AGAGTAC 45200 0.0 17.051762 10-11 GAGTACT 29415 0.0 16.787357 12-13 CAGAGTA 49285 0.0 16.160257 10-11 AGTACTT 32460 0.0 15.237925 12-13 >>END_MODULE