##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139929_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6611626 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.847907610019078 31.0 31.0 34.0 30.0 34.0 2 31.98259550676339 33.0 31.0 34.0 30.0 34.0 3 32.048946658507305 33.0 31.0 34.0 30.0 34.0 4 35.74938056084842 37.0 35.0 37.0 35.0 37.0 5 35.604169231592955 37.0 35.0 37.0 33.0 37.0 6 35.601672417647336 37.0 35.0 37.0 33.0 37.0 7 35.47390203257111 37.0 35.0 37.0 33.0 37.0 8 35.471837487480386 37.0 35.0 37.0 33.0 37.0 9 37.06998021364185 39.0 37.0 39.0 33.0 39.0 10-11 36.949108056021316 39.0 37.0 39.0 33.0 39.0 12-13 36.905670329809944 39.0 37.0 39.0 33.0 39.0 14-15 38.067437268835235 40.0 37.0 41.0 33.0 41.0 16-17 38.06052618523794 40.0 37.0 41.0 33.0 41.0 18-19 38.07829178480452 40.0 37.0 41.0 33.0 41.0 20-21 38.05774054587921 40.0 37.0 41.0 33.0 41.0 22-23 37.96763274901685 40.0 37.0 41.0 33.0 41.0 24-25 37.86964744577996 40.0 37.0 41.0 32.5 41.0 26-27 37.699041232674645 40.0 37.0 41.0 32.0 41.0 28-29 37.563855839682205 39.5 36.5 41.0 32.0 41.0 30-31 37.427132927656416 39.0 36.0 41.0 32.0 41.0 32-33 37.59491040514631 39.5 37.0 41.0 32.0 41.0 34-35 37.563957336813594 40.0 36.0 41.0 32.0 41.0 36-37 37.43171065813516 39.5 36.0 41.0 31.5 41.0 38-39 37.2761927114766 39.0 36.0 41.0 31.0 41.0 40-41 37.21877994346161 39.0 36.0 41.0 31.0 41.0 42-43 37.10613283112702 39.0 36.0 40.0 31.0 41.0 44-45 37.16973405609939 39.0 36.0 40.5 31.0 41.0 46-47 37.31817699472836 39.0 36.0 41.0 31.0 41.0 48-49 37.24163084583829 39.0 36.0 41.0 31.0 41.0 50-51 37.09786265547005 39.0 35.5 41.0 31.0 41.0 52-53 36.9542237773873 39.0 35.0 40.5 31.0 41.0 54-55 36.819210467637234 39.0 35.0 40.0 31.0 41.0 56-57 36.663576883124115 38.5 35.0 40.0 30.0 41.0 58-59 36.51257731791029 38.0 35.0 40.0 30.0 41.0 60-61 36.26586885824537 38.0 34.5 40.0 30.0 41.0 62-63 35.99146846773168 38.0 34.0 40.0 29.0 41.0 64-65 35.751691742406024 37.0 34.0 40.0 29.0 41.0 66-67 35.480713165988426 37.0 34.0 39.5 29.0 41.0 68-69 35.185684351697546 36.0 34.0 39.0 29.0 40.5 70-71 34.87328674071965 36.0 33.5 39.0 28.5 40.0 72-73 34.54685994162156 35.0 33.0 38.0 28.0 40.0 74-75 34.21504771159167 35.0 33.0 37.5 28.0 39.5 76-77 33.110794294661204 34.0 31.5 36.0 26.5 39.0 78-79 33.50217088892262 35.0 32.0 36.0 27.5 39.0 80-81 33.4002066868884 35.0 32.0 36.0 28.0 38.5 82-83 33.191126358541354 35.0 32.0 36.0 27.0 37.0 84-85 32.999576761860226 34.5 32.0 35.0 27.0 37.0 86-87 32.79957365926826 34.0 32.0 35.0 27.0 36.5 88-89 32.590016917033736 34.0 32.0 35.0 27.0 36.0 90-91 32.466668315177884 34.0 32.0 35.0 27.0 36.0 92-93 32.40441927005213 34.0 31.0 35.0 27.0 35.5 94-95 32.37614278837812 34.0 31.0 35.0 27.0 35.0 96-97 32.285939130851226 34.0 31.0 35.0 27.0 35.0 98-99 32.446246565527005 34.0 31.0 35.0 27.0 35.0 100-101 31.66196200452593 33.0 30.0 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 1.0 18 2.0 19 14.0 20 81.0 21 392.0 22 1825.0 23 5666.0 24 14507.0 25 29696.0 26 52607.0 27 81436.0 28 114355.0 29 150144.0 30 188088.0 31 231989.0 32 284491.0 33 354843.0 34 457326.0 35 608063.0 36 870636.0 37 1266809.0 38 1259620.0 39 616633.0 40 22401.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.36124033634086 21.339259056698005 14.19767240312746 25.10182820383367 2 14.949429192474902 22.28447642814565 39.11099017563995 23.655104203739498 3 17.910722717830684 26.070682158972698 30.85330295452284 25.165292168673787 4 12.782680085050183 18.062757935793705 37.68340798466217 31.47115399449394 5 13.136632350347705 37.85888675493744 35.73803176404715 13.266449130667707 6 31.10593840394759 37.73430888775452 17.84393397992173 13.315818728376156 7 26.741213129720283 32.32818976753978 23.08159898941652 17.848998113323407 8 24.90059177575985 36.70879145311608 20.884605390565046 17.506011380559034 9 25.57659795033778 15.885245172670082 20.96984917174686 37.568307705245275 10-11 24.643710941907482 26.488378199250835 28.79634298733776 20.071567871503923 12-13 24.96519010603443 24.08069512703834 28.967768291793877 21.98634647513335 14-15 22.125820486518748 25.559491719586074 26.247832227654737 26.066855566240438 16-17 22.029006177905405 28.56653567518792 27.107711476722972 22.296746670183705 18-19 22.06601240951443 27.863479157643727 28.56902479505592 21.501483637785928 20-21 22.676464624562414 27.088374251477305 28.44901658277878 21.7861445411815 22-23 22.454972309183198 27.02919314544216 28.298964155673072 22.21687038970157 24-25 22.264299663679743 27.137652222519144 28.404837830566375 22.19321028323474 26-27 22.278737361870757 27.230672200717958 28.298600177309257 22.191990260102028 28-29 22.215368145243335 27.315182713969037 28.322555269928333 22.14689387085929 30-31 22.39520638250704 27.220772524556303 28.181151495774902 22.202869597161754 32-33 22.263717939117427 27.388611472847828 28.143890342938583 22.20378024509616 34-35 22.378150492992706 27.408498941253217 28.132191825580595 22.081158740173485 36-37 22.36276749725569 27.33093317670903 28.117056041825585 22.1892432842097 38-39 22.24037390464658 27.422536052079977 28.146321881652188 22.190768161621254 40-41 22.46258103018792 27.271880158982377 28.033633479246124 22.231905331583583 42-43 22.332003050382745 27.44275507986999 27.80915390174748 22.416087967999783 44-45 22.426942320489434 27.473392181911926 27.709081611717696 22.390583885880943 46-47 22.49590535301576 27.4604346369413 27.49161804062117 22.55204196942177 48-49 22.39203387433006 27.601970210782508 27.45910387415006 22.546892040737372 50-51 22.472352115706514 27.66926742071727 27.369113212592715 22.4892672509835 52-53 22.606371896061383 27.533881945671535 27.27020253444387 22.58954362382321 54-55 22.497354598354445 27.46487221071722 27.34910260016756 22.688670590760776 56-57 22.52411773418308 27.574693619169306 27.322895881255377 22.578292765392234 58-59 22.511504464760236 27.60026119806136 27.33444016216134 22.55379417501706 60-61 22.61045831254184 27.555515501721622 27.314807744556774 22.51921844117976 62-63 22.613446907608743 27.67285611182731 27.23078631931171 22.48291066125223 64-65 22.56428262541412 27.59503091440222 27.240689490381044 22.59999696980262 66-67 22.578591742494037 27.572695456528756 27.150351446811534 22.698361354165673 68-69 22.512539245893297 27.533500043163308 27.23931176322899 22.714648947714412 70-71 22.52462103780064 27.382648825077016 27.28590982214222 22.80682031498013 72-73 22.57289400597156 27.438574799412585 27.181982764412847 22.80654843020301 74-75 22.409412196169225 27.531347607757183 27.24460174207277 22.814638454000818 76-77 22.62159099003538 27.406233357006716 27.208926134923416 22.76324951803449 78-79 22.53268460589665 27.406573864950172 27.153170673065617 22.907570856087556 80-81 22.539263060867963 27.47806733731681 27.16499569837548 22.817673903439747 82-83 22.550916615228243 27.393175589301897 27.279058131059834 22.776849664410022 84-85 22.564015438407186 27.366794455453764 27.24316658539369 22.82602352074536 86-87 22.51598310051705 27.358035669314066 27.301429256808284 22.8245519733606 88-89 22.540104572129646 27.286735157168014 27.295049554030626 22.878110716671717 90-91 22.523068088623678 27.34587304560987 27.32335972484436 22.807699140922097 92-93 22.55162328871305 27.22395948872324 27.41395507920876 22.81046214335496 94-95 22.3900938896237 27.248953046433645 27.461638857741498 22.899314206201154 96-97 22.300083299019995 27.32715453350844 27.541936454098227 22.830825713373336 98-99 22.492533652126035 27.93213496843138 27.59570743913909 21.979623940303497 100-101 26.19271472578414 35.266957144936114 28.515468135832922 10.024859993446821 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1626.0 1 1430.5 2 1828.5 3 2576.0 4 3396.0 5 5151.0 6 6655.0 7 7935.5 8 8902.0 9 9001.5 10 8488.0 11 7842.5 12 8527.0 13 11118.5 14 16882.5 15 24589.5 16 30509.0 17 33156.0 18 33790.0 19 33532.0 20 32708.0 21 31955.5 22 32268.5 23 35273.0 24 41598.5 25 51190.5 26 62648.5 27 74353.5 28 87415.5 29 102013.5 30 115934.5 31 129757.0 32 143406.5 33 156211.0 34 168831.5 35 181335.0 36 195442.0 37 208959.0 38 220471.0 39 230578.5 40 240574.5 41 251183.0 42 259154.5 43 266700.0 44 274555.0 45 281250.0 46 286132.5 47 288624.5 48 289562.5 49 288424.0 50 286412.5 51 282895.0 52 274791.0 53 262912.5 54 250450.5 55 236395.5 56 220197.0 57 201853.0 58 181412.5 59 160038.0 60 137380.5 61 114504.5 62 93067.0 63 73716.5 64 56430.5 65 42733.5 66 32447.0 67 24681.0 68 18872.5 69 13823.0 70 9974.0 71 7322.5 72 5286.5 73 3741.0 74 2576.0 75 1746.5 76 1187.5 77 790.0 78 534.0 79 380.5 80 267.0 81 182.0 82 136.0 83 104.0 84 75.0 85 52.0 86 37.5 87 30.5 88 20.5 89 11.0 90 6.5 91 5.5 92 5.0 93 3.5 94 2.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0030703491092811362 3 0.0 4 0.0 5 0.0 6 1.5124872459512987E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 8.318679852732143E-5 20-21 0.002049539564508388 22-23 3.7819025223701424E-4 24-25 3.0263669191463705E-5 26-27 3.557678253116394E-4 28-29 0.0038936172856003128 30-31 3.641723038769025E-4 32-33 4.566099541883233E-5 34-35 0.002254634611621992 36-37 0.05607070354196096 38-39 0.031717428521317495 40-41 0.04197328327665478 42-43 8.387057978307586E-4 44-45 0.002145277727414448 46-47 0.0014601796832221297 48-49 6.410943974514032E-4 50-51 8.32028227722465E-6 52-53 8.755002452663427E-4 54-55 0.0024116311864305095 56-57 0.001096788379086681 58-59 0.0036947408603317912 60-61 0.0012874280871526663 62-63 9.001250093613001E-5 64-65 7.392896776998197E-4 66-67 4.8181879925381094E-4 68-69 2.3535007004959484E-4 70-71 0.0012246504531876407 72-73 0.001575173553497221 74-75 7.805101671329144E-4 76-77 0.0012357293354910708 78-79 2.044476774437171E-4 80-81 0.002103134159240365 82-83 0.002927634911197726 84-85 0.004074290416933918 86-87 0.004221055462244147 88-89 0.06951992970324841 90-91 8.525954618878308E-4 92-93 1.1818572153387575E-4 94-95 9.727217215812661E-5 96-97 0.008269872060660205 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 270.0 20-21 670.0 22-23 1296.0 24-25 3029.0 26-27 4234.0 28-29 7697.0 30-31 18529.0 32-33 25563.0 34-35 36929.0 36-37 55466.0 38-39 60321.0 40-41 61916.0 42-43 69715.0 44-45 81536.0 46-47 81937.0 48-49 75217.0 50-51 70453.0 52-53 70714.0 54-55 76696.0 56-57 78818.0 58-59 79452.0 60-61 77662.0 62-63 75578.0 64-65 80509.0 66-67 85128.0 68-69 84881.0 70-71 84828.0 72-73 81209.0 74-75 83946.0 76-77 83941.0 78-79 88790.0 80-81 89195.0 82-83 86938.0 84-85 88787.0 86-87 94012.0 88-89 99694.0 90-91 108001.0 92-93 113470.0 94-95 144671.0 96-97 179329.0 98-99 533754.0 100-101 3286845.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.5072695934333 #Duplication Level Percentage of deduplicated Percentage of total 1 92.13029643291381 81.54200984110828 2 5.682328739221098 10.058548032815114 3 1.2442081871650075 3.3036440835531073 4 0.43858956396299975 1.552734591141583 5 0.19184203422856022 0.8489707321409921 6 0.10367906574840063 0.5505810614033396 7 0.05710287556222273 0.3537813721362145 8 0.03686466162171341 0.26102324356989465 9 0.027676496567069962 0.22046140287570537 >10 0.08546827845377752 1.1719994693531008 >50 0.0016537542463720086 0.09473721641156965 >100 2.89910309000333E-4 0.041508953491167726 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.024974491902597E-5 2 0.0 4.5374617378538954E-5 0.0 1.5124872459512985E-5 3.024974491902597E-5 3 0.0 4.5374617378538954E-5 0.0 1.5124872459512985E-5 3.024974491902597E-5 4 0.0 1.2099897967610388E-4 0.0 1.5124872459512985E-5 3.024974491902597E-5 5 0.0 1.2099897967610388E-4 0.0 3.024974491902597E-5 3.024974491902597E-5 6 0.0 1.2099897967610388E-4 0.0 3.024974491902597E-5 3.024974491902597E-5 7 0.0 1.2099897967610388E-4 0.0 4.5374617378538954E-5 3.024974491902597E-5 8 0.0 1.3612385213561685E-4 0.0 4.5374617378538954E-5 6.049948983805194E-5 9 0.0 2.4199795935220776E-4 0.0 6.049948983805194E-5 6.049948983805194E-5 10-11 0.0 2.4199795935220776E-4 0.0 6.049948983805194E-5 6.049948983805194E-5 12-13 0.0 2.4199795935220776E-4 0.0 6.049948983805194E-5 6.049948983805194E-5 14-15 0.0 3.024974491902597E-4 0.0 6.049948983805194E-5 8.318679852732141E-5 16-17 0.0 3.1762232164977267E-4 0.0 7.562436229756492E-5 9.074923475707791E-5 18-19 0.0 3.3274719410928566E-4 0.0 1.4368628836537335E-4 9.074923475707791E-5 20-21 1.5124872459512985E-5 3.4787206656879864E-4 0.0 1.7393603328439932E-4 9.074923475707791E-5 22-23 3.024974491902597E-5 3.705593752580681E-4 0.0 2.041857782034253E-4 9.83116709868344E-5 24-25 3.024974491902597E-5 3.932466839473376E-4 0.0 2.4956039558196423E-4 1.058741072165909E-4 26-27 3.024974491902597E-5 3.932466839473376E-4 0.0 3.4787206656879864E-4 1.058741072165909E-4 28-29 3.024974491902597E-5 4.159339926366071E-4 0.0 7.033065693673537E-4 1.058741072165909E-4 30-31 3.024974491902597E-5 5.293705360829544E-4 0.0 0.001966233419736688 1.058741072165909E-4 32-33 3.024974491902597E-5 5.596202810019804E-4 0.0 0.004295463778501688 1.3612385213561685E-4 34-35 3.024974491902597E-5 6.881816969078408E-4 0.0 0.007834683934027725 1.3612385213561685E-4 36-37 3.024974491902597E-5 8.167431128137012E-4 0.0 0.013037640060100192 1.3612385213561685E-4 38-39 3.024974491902597E-5 8.243055490434576E-4 0.0 0.0210840722085611 1.3612385213561685E-4 40-41 3.024974491902597E-5 9.226172200302921E-4 0.0 0.029531313477199103 1.5124872459512984E-4 42-43 3.024974491902597E-5 9.528669649493181E-4 0.0 0.03770630704156587 1.5124872459512984E-4 44-45 3.781218114878246E-5 0.001134365434463474 0.0 0.04783240915320981 1.5124872459512984E-4 46-47 4.5374617378538954E-5 0.0012704892865990907 0.0 0.05941806145719676 1.6637359705464283E-4 48-49 4.5374617378538954E-5 0.0012780517228288472 0.0 0.06960466305867877 1.966233419736688E-4 50-51 4.5374617378538954E-5 0.0013536760851264123 0.0 0.0800105753108237 1.966233419736688E-4 52-53 4.5374617378538954E-5 0.0013612385213561686 0.0 0.08987199215442615 2.117482144331818E-4 54-55 5.293705360829545E-5 0.001383925830045438 0.0 0.10076946276150527 2.2687308689269478E-4 56-57 6.049948983805194E-5 0.0014066131387347077 0.0 0.11200724299892342 2.2687308689269478E-4 58-59 7.562436229756492E-5 0.0014217380111942205 0.0 0.12322233592765228 2.2687308689269478E-4 60-61 7.562436229756492E-5 0.001489799937262029 0.0 0.13363581061602697 2.2687308689269478E-4 62-63 7.562436229756492E-5 0.0015124872459512985 0.0 0.14336110360749382 2.2687308689269478E-4 64-65 7.562436229756492E-5 0.0016788608430059414 0.0 0.15327545750470462 2.2687308689269478E-4 66-67 7.562436229756492E-5 0.0016788608430059414 0.0 0.16368893219307928 2.2687308689269478E-4 68-69 9.074923475707791E-5 0.0017317978966142368 0.0 0.17473008908852378 2.2687308689269478E-4 70-71 1.058741072165909E-4 0.0017696100777630191 0.0 0.18523431301165552 2.2687308689269478E-4 72-73 1.058741072165909E-4 0.0017998598226820453 0.0 0.19402186391063259 2.571228318117207E-4 74-75 1.058741072165909E-4 0.0018603593125200973 0.0 0.20217417016631006 2.571228318117207E-4 76-77 1.058741072165909E-4 0.001966233419736688 0.0 0.2098349180670534 2.571228318117207E-4 78-79 1.058741072165909E-4 0.00202673290957474 0.0 0.21683773401580791 2.571228318117207E-4 80-81 1.058741072165909E-4 0.00202673290957474 0.0 0.22169281807531158 2.646852680414772E-4 82-83 1.058741072165909E-4 0.00202673290957474 0.0 0.22533034990182443 2.722477042712337E-4 84-85 1.058741072165909E-4 0.0020645450907235225 0.0 0.22862000966176854 2.722477042712337E-4 86-87 1.058741072165909E-4 0.002087232399412792 0.0 0.22907375583555392 2.722477042712337E-4 88-89 1.058741072165909E-4 0.0021174821443318177 0.0 0.2291266928891622 2.722477042712337E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6905 0.0 45.18527 1 GTATCAA 11520 0.0 31.27481 1 TCAACGC 13960 0.0 25.052217 4 ATCAACG 14275 0.0 24.584667 3 CAACGCA 14425 0.0 24.329021 5 TATCAAC 14935 0.0 23.716095 2 AACGCAG 14990 0.0 23.493212 6 GTACATG 17120 0.0 21.115828 1 TACATGG 17320 0.0 20.450342 2 ACATGGG 17660 0.0 19.803452 3 ACGCAGA 18095 0.0 19.46191 7 CGCAGAG 18520 0.0 18.99339 8 CATGGGG 13455 0.0 18.062069 4 GTGGTAT 3600 0.0 17.468813 1 TGGTATC 3375 0.0 16.950384 2 GAGTACT 12460 0.0 16.297102 12-13 AGAGTAC 18955 0.0 16.0211 10-11 GCAGAGT 21815 0.0 15.882798 9 CAGAGTA 20955 0.0 15.634327 10-11 GTACTTT 13695 0.0 14.57723 14-15 >>END_MODULE