##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139928_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12513615 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.81737755236996 31.0 31.0 34.0 30.0 34.0 2 31.961700276059315 31.0 31.0 34.0 30.0 34.0 3 32.02583945566489 33.0 31.0 34.0 30.0 34.0 4 35.73241657186992 37.0 35.0 37.0 35.0 37.0 5 35.59185167515542 37.0 35.0 37.0 33.0 37.0 6 35.58965654609 37.0 35.0 37.0 33.0 37.0 7 35.461870770356924 37.0 35.0 37.0 33.0 37.0 8 35.45890408167424 37.0 35.0 37.0 33.0 37.0 9 37.048815789841704 39.0 37.0 39.0 33.0 39.0 10-11 36.927153664228925 39.0 37.0 39.0 33.0 39.0 12-13 36.88204779354327 39.0 37.0 39.0 33.0 39.0 14-15 38.02862506158293 40.0 37.0 41.0 33.0 41.0 16-17 38.02264073970631 40.0 37.0 41.0 33.0 41.0 18-19 38.05563140627228 40.0 37.0 41.0 33.0 41.0 20-21 38.04410351291676 40.0 37.0 41.0 33.0 41.0 22-23 37.95183025839617 40.0 37.0 41.0 33.0 41.0 24-25 37.848918072447816 40.0 37.0 41.0 32.0 41.0 26-27 37.6716700098797 40.0 37.0 41.0 32.0 41.0 28-29 37.534530660241 39.0 36.5 41.0 32.0 41.0 30-31 37.390530442664684 39.0 36.0 41.0 31.5 41.0 32-33 37.55088743887714 39.0 36.0 41.0 32.0 41.0 34-35 37.521843726234806 40.0 36.0 41.0 32.0 41.0 36-37 37.39385760227235 39.0 36.0 41.0 31.5 41.0 38-39 37.23066533570092 39.0 36.0 41.0 31.0 41.0 40-41 37.18939538515075 39.0 36.0 40.5 31.0 41.0 42-43 37.08608250137029 39.0 36.0 40.0 31.0 41.0 44-45 37.15372585667636 39.0 36.0 40.5 31.0 41.0 46-47 37.30090812857832 39.0 36.0 41.0 31.0 41.0 48-49 37.223671440992106 39.0 36.0 41.0 31.0 41.0 50-51 37.07881766655959 39.0 35.5 41.0 31.0 41.0 52-53 36.950319009010244 39.0 35.0 40.5 31.0 41.0 54-55 36.82593075798718 39.0 35.0 40.0 31.0 41.0 56-57 36.67727931739576 38.5 35.0 40.0 30.0 41.0 58-59 36.54510477736481 38.0 35.0 40.0 30.0 41.0 60-61 36.31412314957391 38.0 35.0 40.0 30.0 41.0 62-63 36.05932103311798 38.0 34.0 40.0 29.0 41.0 64-65 35.84146232540138 37.0 34.0 40.0 29.0 41.0 66-67 35.59524125783898 37.0 34.0 40.0 29.0 41.0 68-69 35.31293844946434 36.5 34.0 39.0 29.0 41.0 70-71 35.0222470300349 36.0 34.0 39.0 29.0 40.0 72-73 34.706503520510005 35.5 33.0 38.5 28.0 40.0 74-75 34.381235858803244 35.0 33.0 38.0 28.0 40.0 76-77 33.25811546443942 34.5 31.5 36.5 26.5 39.0 78-79 33.65397819947944 35.0 32.0 37.0 28.0 39.0 80-81 33.549896369091286 35.0 32.0 36.0 28.0 39.0 82-83 33.31682944925548 35.0 32.0 36.0 27.5 37.5 84-85 33.11219458041526 35.0 32.0 35.5 27.0 37.0 86-87 32.9048638540266 34.0 32.0 35.0 27.0 37.0 88-89 32.675914329998996 34.0 32.0 35.0 27.0 36.0 90-91 32.5444110370578 34.0 32.0 35.0 27.0 36.0 92-93 32.473074556332605 34.0 32.0 35.0 27.0 36.0 94-95 32.43987244181053 34.0 31.5 35.0 27.0 35.0 96-97 32.343052558429946 34.0 31.0 35.0 27.0 35.0 98-99 32.49285882077275 34.0 31.0 35.0 27.0 35.0 100-101 31.718777535102873 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 0.0 17 3.0 18 3.0 19 19.0 20 147.0 21 740.0 22 3273.0 23 10529.0 24 26983.0 25 55630.0 26 98478.0 27 152126.0 28 214341.0 29 282006.0 30 356039.0 31 436829.0 32 537079.0 33 667559.0 34 862431.0 35 1136926.0 36 1630391.0 37 2371351.0 38 2413764.0 39 1212982.0 40 43985.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.55291216806654 22.36433676439622 14.220974514558742 24.861776552978494 2 14.506328403787142 22.440677982355734 39.99376817432681 23.059225439530312 3 17.312015752442438 27.129930080156694 31.5629816004408 23.99507256696007 4 11.92968618580642 18.643189837628853 39.018756770125975 30.408367206438747 5 12.143389420243471 38.84676810018528 36.529412164270674 12.480430315300575 6 29.47510371703141 39.286648981928884 18.277404251289493 12.960843049750212 7 25.50244673501622 33.063091680541554 23.826839806083214 17.60762177835901 8 24.430238584134162 37.15367621586568 21.258940761722332 17.157144438277825 9 25.17157512037888 15.667886537982827 21.55918173924961 37.60135660238868 10-11 24.043511806939883 27.064353506161087 29.27584075425047 19.61629393264856 12-13 24.493581590931157 24.498979711298453 29.33468466146673 21.672754036303658 14-15 21.605367433791116 26.097298822122944 26.802750444216162 25.494583299869785 16-17 21.283785700614892 29.039270426651292 27.699241985629254 21.977701887104566 18-19 21.072551378296303 28.382761285100905 29.37310770896403 21.17157962763876 20-21 22.02783865348182 27.699890975170437 28.992097338186195 21.280173033161546 22-23 21.675301213365785 27.671102200036007 28.891745423976655 21.761851162621547 24-25 21.45993971099493 27.719746867725952 29.210502646887992 21.609810774391125 26-27 21.588675822066982 27.95245503201548 28.974414051353627 21.484455094563913 28-29 21.365869648877638 28.08042715921551 29.013053843778536 21.540649348128316 30-31 21.651234002443363 27.952242193580428 28.931653183146857 21.464870620829355 32-33 21.387573109227073 28.035617512171353 29.005437051723508 21.57137232687807 34-35 21.44125465371362 28.086913214022154 28.990916144897366 21.48091598736686 36-37 21.503084346030608 27.9989283018303 29.02471805274428 21.473269299394815 38-39 21.4204344366554 28.07803699601004 29.028446215204873 21.473082352129687 40-41 21.58303766266864 27.95804645646507 28.964471569158395 21.494444311707895 42-43 21.617932625950647 28.03237100837763 28.7421580848285 21.607538280843215 44-45 21.55713375045431 28.448339418475694 28.434994987986407 21.55953184308359 46-47 21.797243749360614 28.080976121725705 28.037812290854554 22.083967838059124 48-49 21.85552157201718 28.122799039976442 28.145504542017363 21.876174845989016 50-51 21.60477391145683 28.286601400710282 28.062432184232712 22.046192503600174 52-53 21.662301961557116 28.330702892755927 28.04651585971774 21.960479285969217 54-55 21.759039624144556 28.227432331870826 27.921424437229287 22.092103606755327 56-57 21.989089935700033 28.349887075189866 27.688922189847197 21.972100799262904 58-59 21.67165719119134 28.49936603439332 28.07919056221247 21.74978621220287 60-61 21.926690294639027 28.65237228941663 27.668126143839416 21.75281127210493 62-63 21.89435008170165 28.545338401434435 27.613446349731475 21.946865167132444 64-65 21.717973405755856 28.508480796532854 27.747782874610248 22.02576292310104 66-67 21.939918988807648 28.506657050827027 27.524859779514 22.028564180851323 68-69 21.854017087145333 28.315411932325198 27.753075373775925 22.077495606753548 70-71 21.856798559356193 27.940430031415087 27.89422940710932 22.3085420021194 72-73 21.97493935632095 28.04199846381563 27.96863440330442 22.014427776559 74-75 21.838044585728976 28.219109236919838 27.824806398077754 22.118039779273428 76-77 21.791032319062765 28.286941584848012 27.74476152412731 22.177264571961913 78-79 21.87513685794378 28.202407025151345 27.70054911745184 22.221906999453036 80-81 21.78507757522457 28.090320285125042 27.865923595430935 22.25867854421946 82-83 21.99582707382007 27.960356571786456 28.08553634531259 21.958280009080884 84-85 22.24024000597496 27.948742660512828 27.70028731475533 22.11073001875688 86-87 21.708698096108655 28.159117451166015 27.917318363210196 22.21486608951513 88-89 22.001999741478752 27.929647701898624 27.90612311895253 22.162229437670096 90-91 21.97517201116307 27.89296022310231 28.087672483584598 22.044195282150024 92-93 21.98459441319523 27.88080022536674 27.98108791483606 22.15351744660197 94-95 21.634459684662204 27.971705828658582 28.108180463684523 22.285654022994684 96-97 21.551144160825604 28.0648656819159 28.20701894503051 22.176971212227986 98-99 21.616334269308542 28.681630254948114 28.325294039195615 21.376741436547732 100-101 25.231183914351107 36.06360300376416 29.09941929748236 9.605793784402367 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2319.0 1 2258.5 2 3879.5 3 5887.0 4 8338.5 5 13679.0 6 17827.5 7 20266.0 8 21190.5 9 19809.5 10 17739.0 11 16231.0 12 18320.5 13 25697.5 14 41857.0 15 62985.5 16 77910.0 17 82934.5 18 82163.5 19 79423.5 20 75617.5 21 72665.5 22 73074.5 23 80434.5 24 94960.0 25 116940.0 26 147737.5 27 178821.5 28 204569.5 29 230920.0 30 253185.0 31 272932.0 32 300669.5 33 331840.0 34 364306.5 35 398602.0 36 431585.0 37 458192.0 38 471567.5 39 477193.5 40 489807.0 41 499834.0 42 504249.0 43 517055.0 44 530920.0 45 543697.5 46 552738.0 47 558008.0 48 564482.5 49 553388.0 50 527584.0 51 509601.5 52 490118.5 53 461906.0 54 428294.5 55 392666.5 56 361450.0 57 326689.0 58 288931.5 59 250798.5 60 208099.0 61 163820.5 62 124938.0 63 94938.5 64 69587.0 65 49314.0 66 35158.0 67 25951.5 68 19336.5 69 13937.0 70 10456.5 71 7805.5 72 5527.5 73 3807.0 74 2623.0 75 1752.5 76 1210.5 77 801.5 78 509.5 79 342.5 80 249.0 81 171.5 82 118.0 83 75.5 84 44.5 85 25.5 86 19.0 87 16.5 88 14.0 89 11.0 90 7.0 91 3.0 92 1.5 93 2.5 94 2.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0034202746368655265 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 1.1187814232737702E-4 20-21 0.0020099100954827174 22-23 3.59674350842747E-4 24-25 2.3984481081361118E-5 26-27 3.3593674982874223E-4 28-29 0.0033819696591294766 30-31 3.4877616648088655E-4 32-33 5.62962194474888E-5 34-35 0.0022296127962325362 36-37 0.054954115996608106 38-39 0.03205966060266662 40-41 0.040986344146223354 42-43 8.969233475476125E-4 44-45 0.0024065235377950253 46-47 0.0015026384652283215 48-49 5.763671144136753E-4 50-51 8.848900510838179E-6 52-53 9.273017802850266E-4 54-55 0.002237227935725213 56-57 0.0012430920912087054 58-59 0.0037443309147105926 60-61 0.0014528879019591243 62-63 1.5428572723469495E-4 64-65 7.441687766952189E-4 66-67 4.2809152517163233E-4 68-69 1.9745457759959837E-4 70-71 0.0011998011934571803 72-73 0.001743491736451276 74-75 7.184088106933714E-4 76-77 0.0011203954790364535 78-79 2.093319638615908E-4 80-81 0.0023746008649609958 82-83 0.0024435611762422217 84-85 0.004197689486764248 86-87 0.004250983537873023 88-89 0.06834531522135921 90-91 7.272752136837143E-4 92-93 9.564559405064E-5 94-95 5.246751441053076E-5 96-97 0.008496608811432677 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 389.0 20-21 1358.0 22-23 2827.0 24-25 5006.0 26-27 8093.0 28-29 15791.0 30-31 34647.0 32-33 50426.0 34-35 72839.0 36-37 109318.0 38-39 123930.0 40-41 125705.0 42-43 142655.0 44-45 165144.0 46-47 165526.0 48-49 153414.0 50-51 140497.0 52-53 140126.0 54-55 154710.0 56-57 164700.0 58-59 163808.0 60-61 163769.0 62-63 156398.0 64-65 163352.0 66-67 172813.0 68-69 165357.0 70-71 162815.0 72-73 153995.0 74-75 157076.0 76-77 158859.0 78-79 168625.0 80-81 171840.0 82-83 161453.0 84-85 163865.0 86-87 173532.0 88-89 186071.0 90-91 200743.0 92-93 209364.0 94-95 265935.0 96-97 325652.0 98-99 970661.0 100-101 6120531.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.47419268521375 #Duplication Level Percentage of deduplicated Percentage of total 1 89.24889026873528 73.60730172965174 2 6.799742307119999 11.216065144944293 3 1.9712709637330714 4.877369438930651 4 0.8292591588933695 2.7356991862620017 5 0.43594711394325536 1.7977193137959437 6 0.23548045491182198 1.165263624719964 7 0.14171512104071776 0.8181488139384383 8 0.09034570963775573 0.5960951571957313 9 0.06181885138194363 0.45886138744077104 >10 0.18128275447017367 2.1634781197175417 >50 0.0028646919102373217 0.16020262581264672 >100 0.0012290003854605225 0.20593469087740768 >500 6.827174491783267E-5 0.042243246433837194 >1k 8.5332091979292E-5 0.1556175202790394 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 5.593907116368851E-5 0.0 8 0.0 0.0 0.0 5.593907116368851E-5 0.0 9 0.0 0.0 0.0 9.589555056632317E-5 0.0 10-11 0.0 0.0 0.0 9.589555056632317E-5 0.0 12-13 0.0 3.995647940263465E-6 0.0 1.0388684644685009E-4 0.0 14-15 0.0 7.99129588052693E-6 0.0 1.1187814232737702E-4 0.0 16-17 0.0 7.99129588052693E-6 0.0 1.1187814232737702E-4 0.0 18-19 0.0 7.99129588052693E-6 0.0 1.238650861481674E-4 0.0 20-21 0.0 7.99129588052693E-6 0.0 1.3585202996895782E-4 0.0 22-23 0.0 7.99129588052693E-6 0.0 1.598259176105386E-4 0.0 24-25 0.0 7.99129588052693E-6 0.0 2.197606367144906E-4 0.0 26-27 0.0 7.99129588052693E-6 0.0 3.356344269821311E-4 0.0 28-29 0.0 7.99129588052693E-6 0.0 8.390860674553277E-4 0.0 30-31 0.0 7.99129588052693E-6 0.0 0.0020577586892356844 0.0 32-33 0.0 7.99129588052693E-6 0.0 0.0045909994833627215 0.0 34-35 0.0 7.99129588052693E-6 0.0 0.008514725760701444 0.0 36-37 0.0 7.99129588052693E-6 0.0 0.01466802358870718 0.0 38-39 0.0 7.99129588052693E-6 0.0 0.02359430108725576 0.0 40-41 0.0 7.99129588052693E-6 7.99129588052693E-6 0.03350350797910916 0.0 42-43 0.0 7.99129588052693E-6 7.99129588052693E-6 0.04211812493831718 0.0 44-45 0.0 7.99129588052693E-6 7.99129588052693E-6 0.052678622444433526 0.0 46-47 0.0 7.99129588052693E-6 7.99129588052693E-6 0.064317944894421 0.0 48-49 0.0 7.99129588052693E-6 7.99129588052693E-6 0.07573750670769397 0.0 50-51 0.0 7.99129588052693E-6 7.99129588052693E-6 0.08698525565953563 0.0 52-53 0.0 7.99129588052693E-6 7.99129588052693E-6 0.0976856008435612 0.0 54-55 0.0 7.99129588052693E-6 7.99129588052693E-6 0.10956865781790474 0.0 56-57 0.0 7.99129588052693E-6 7.99129588052693E-6 0.12149566691959118 0.0 58-59 0.0 7.99129588052693E-6 7.99129588052693E-6 0.13268747680026916 0.0 60-61 0.0 7.99129588052693E-6 7.99129588052693E-6 0.1428404182164786 0.0 62-63 0.0 7.99129588052693E-6 7.99129588052693E-6 0.15153095248655163 0.0 64-65 0.0 7.99129588052693E-6 7.99129588052693E-6 0.16114448143082555 0.0 66-67 0.0 7.99129588052693E-6 7.99129588052693E-6 0.17078997555862155 0.0 68-69 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.181610190180855 0.0 70-71 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.1918790053873321 0.0 72-73 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.20058152660122597 0.0 74-75 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.20892843514843631 0.0 76-77 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.21725536545594537 0.0 78-79 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.22458737942632884 0.0 80-81 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.2294261090819879 0.0 82-83 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.23315005296231345 0.0 84-85 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.23665024055798423 0.0 86-87 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.23713371395875613 0.0 88-89 7.99129588052693E-6 7.99129588052693E-6 7.99129588052693E-6 0.23720563562168087 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16595 0.0 39.3931 1 GTATCAA 26980 0.0 28.432383 1 CTTATAC 12675 0.0 24.265562 1 TATACAC 14885 0.0 23.578787 3 ATCAACG 32420 0.0 22.891523 3 CAACGCA 32880 0.0 22.485676 5 AACGCAG 33875 0.0 22.110043 6 TCAACGC 33690 0.0 22.100191 4 TATCAAC 35300 0.0 21.53742 2 TACATGG 36995 0.0 20.365892 2 GTACATG 39080 0.0 19.78343 1 ACATGGG 37310 0.0 19.686539 3 TAACGCC 1365 0.0 19.144178 4 ACGCAGA 39020 0.0 18.95774 7 CGCAGAG 39875 0.0 18.541168 8 GGCGTCG 1780 0.0 18.294521 8 GTACTAG 3925 0.0 18.130527 1 CATGGGG 27010 0.0 17.727327 4 ACACATC 17995 0.0 17.426043 6 ACATCTC 18655 0.0 17.262087 8 >>END_MODULE