##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139927_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15334074 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.839599248053712 31.0 31.0 34.0 30.0 34.0 2 32.01204526598737 31.0 31.0 34.0 30.0 34.0 3 32.04247520913229 33.0 31.0 34.0 30.0 34.0 4 35.76799825017148 37.0 35.0 37.0 35.0 37.0 5 35.58326678220022 37.0 35.0 37.0 33.0 37.0 6 35.591766089038046 37.0 35.0 37.0 33.0 37.0 7 35.484296802010995 37.0 35.0 37.0 33.0 37.0 8 35.451711593409556 37.0 35.0 37.0 33.0 37.0 9 37.03273657085521 39.0 37.0 39.0 33.0 39.0 10-11 36.874867077072935 39.0 37.0 39.0 33.0 39.0 12-13 36.835030436138496 39.0 37.0 39.0 32.5 39.0 14-15 37.976587370062255 40.0 37.0 41.0 33.0 41.0 16-17 37.98928755006661 40.0 37.0 41.0 33.0 41.0 18-19 37.96674523678443 40.0 37.0 41.0 33.0 41.0 20-21 37.92926195464893 40.0 37.0 41.0 33.0 41.0 22-23 37.85165268291995 40.0 37.0 41.0 32.5 41.0 24-25 37.758017801822675 39.5 37.0 41.0 32.0 41.0 26-27 37.59675130202426 39.0 37.0 41.0 32.0 41.0 28-29 37.45904999716923 39.0 36.0 41.0 32.0 41.0 30-31 37.32798077721894 39.0 36.0 40.0 31.5 41.0 32-33 37.49675452140836 39.0 36.0 41.0 32.0 41.0 34-35 37.46980609128575 39.0 36.0 41.0 32.0 41.0 36-37 37.36236763321723 39.0 36.0 40.5 31.5 41.0 38-39 37.20021566836694 39.0 36.0 40.0 31.0 41.0 40-41 37.17076923055495 39.0 36.0 40.0 31.0 41.0 42-43 37.0474329705423 39.0 35.5 40.0 31.0 41.0 44-45 37.09220436992939 39.0 35.5 40.0 31.0 41.0 46-47 37.23836151583582 39.0 36.0 41.0 31.0 41.0 48-49 37.16836585088756 39.0 36.0 41.0 31.0 41.0 50-51 37.04738549465583 39.0 35.5 40.5 31.0 41.0 52-53 36.8948769366701 39.0 35.0 40.0 31.0 41.0 54-55 36.74881332356487 39.0 35.0 40.0 30.0 41.0 56-57 36.56912129177838 38.0 35.0 40.0 30.0 41.0 58-59 36.40445408339444 38.0 35.0 40.0 30.0 41.0 60-61 36.19191049791884 38.0 34.0 40.0 29.5 41.0 62-63 35.92068301130655 37.5 34.0 40.0 29.0 41.0 64-65 35.67661233242025 37.0 34.0 40.0 29.0 41.0 66-67 35.38963743629209 36.5 34.0 39.0 29.0 41.0 68-69 35.05670191004931 36.0 33.5 39.0 28.0 40.5 70-71 34.699972852234716 36.0 33.0 39.0 28.0 40.0 72-73 34.404802343981075 35.0 33.0 38.0 28.0 40.0 74-75 34.04356665015342 35.0 32.5 37.5 28.0 39.5 76-77 32.97320099774406 34.0 31.0 36.0 26.0 39.0 78-79 33.33061473813905 35.0 32.0 36.0 27.0 39.0 80-81 33.21146192284115 35.0 32.0 36.0 27.0 38.5 82-83 32.78324597589229 34.0 31.5 35.5 26.5 37.0 84-85 32.539504511572915 34.0 31.0 35.0 26.0 37.0 86-87 32.453950642476784 34.0 31.0 35.0 26.0 36.0 88-89 32.29006555956656 34.0 31.0 35.0 26.0 36.0 90-91 32.157703607402965 34.0 31.0 35.0 26.0 36.0 92-93 32.07340100483124 34.0 31.0 35.0 26.0 35.0 94-95 32.01982682010594 34.0 31.0 35.0 26.0 35.0 96-97 31.927039789573776 34.0 31.0 35.0 26.0 35.0 98-99 32.13327410796412 34.0 31.0 35.0 26.5 35.0 100-101 31.228762425904165 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 1.0 16 1.0 17 0.0 18 5.0 19 26.0 20 134.0 21 813.0 22 3559.0 23 11616.0 24 30186.0 25 63162.0 26 111934.0 27 178157.0 28 256132.0 29 343239.0 30 440712.0 31 553147.0 32 692683.0 33 879615.0 34 1143246.0 35 1514000.0 36 2111327.0 37 2870415.0 38 2702495.0 39 1382368.0 40 45100.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.5445316097992 21.9468159603247 14.749635354570481 24.75901707530562 2 14.61522253095741 22.60582426284682 40.06450027126191 22.714452934933856 3 17.514185565700647 26.919749240792058 31.229771763836002 24.336293429671294 4 12.767157527834586 18.56855886476592 38.326110528639134 30.33817307876036 5 12.923499651821166 38.0841908027834 35.908245910382334 13.08406363501311 6 30.312577075081286 38.18340774930394 18.31802820307245 13.185986972542327 7 26.03798573034146 32.760980545678855 23.744805196583766 17.456228527395915 8 24.27787292535565 37.099162296986435 21.343884214984225 17.27908056267369 9 25.57187998440597 16.29105872320689 21.342410373133717 36.79465091925343 10-11 24.264018159818455 26.720315814310013 29.222762326567615 19.792903699303917 12-13 24.708293438521295 24.422462680172274 29.305897441214906 21.563346440091525 14-15 22.01576371680481 25.801284120580085 26.62494324730662 25.558008915308484 16-17 21.765850122596554 28.745621813724654 27.44121536478242 22.04731269889638 18-19 21.8366863548765 28.079195997412526 28.90056666019516 21.183550987515815 20-21 22.506118947733057 27.383303199057192 28.63099820981302 21.479579643396736 22-23 22.32017431585849 27.277946044100588 28.465476254499823 21.9364033855411 24-25 22.07805968667596 27.398033388812692 28.57458319279718 21.949323731714166 26-27 22.044673324171008 27.489455426484867 28.536706160756914 21.92916508858721 28-29 22.009072609614574 27.593939488939924 28.49441444406998 21.90257345737552 30-31 22.261402594595253 27.45255913304261 28.361272329325622 21.924765943036515 32-33 22.084566584392466 27.627966267412667 28.296057093798012 21.99141005439686 34-35 22.18957647142323 27.599868284337475 28.348888050764998 21.8616671934743 36-37 22.154174111686608 27.589157301352678 28.29909622003643 21.95757236692429 38-39 22.044863426272762 27.633481308081542 28.36321831975312 21.958436945892576 40-41 22.255415444328555 27.48476198879893 28.217531668469416 22.04229089840311 42-43 22.13157446292242 27.657331066114583 27.988877973693683 22.22221649726932 44-45 22.212552614101067 27.65545091137439 27.906171113657596 22.225825360866942 46-47 22.298895432344693 27.618929211189357 27.69619008634295 22.385985270122998 48-49 22.187294036746955 27.800979264479516 27.647028481773006 22.364698217000527 50-51 22.210496207711223 27.843039336452836 27.574198905293684 22.372265550542256 52-53 22.36886343247533 27.67670232098084 27.451370735859037 22.503063510684793 54-55 22.257978492873377 27.567056143568262 27.54997362718839 22.624991736369967 56-57 22.261561284338484 27.639523544931127 27.580302133466837 22.518613037263552 58-59 22.254391357069082 27.7021699642393 27.524111810174105 22.519326868517513 60-61 22.327906045751604 27.64770991711761 27.52924538454457 22.49513865258622 62-63 22.293381470342798 27.75614931813029 27.483744780975094 22.46672443055182 64-65 22.21666680025328 27.757532281205165 27.46175148080761 22.564049437733942 66-67 22.306068048223633 27.832907223465988 27.23911657201204 22.621908156298346 68-69 22.260578675217758 27.803082907052847 27.290546716468857 22.645791701260542 70-71 22.198571795990404 27.612008941373023 27.406955367885637 22.782463894750933 72-73 22.302159232259598 27.58950875399116 27.282942461991787 22.825389551757453 74-75 22.260236147551137 27.631405049342927 27.250580930575463 22.857777872530473 76-77 22.47102245049257 27.60336770322865 27.162468113567574 22.763141732711215 78-79 22.43108578537469 27.578858486688222 27.129342832303287 22.860712895633796 80-81 22.422137766788687 27.597761981556317 27.10432527784217 22.875774973812824 82-83 22.38325025273135 27.596021082550248 27.158941161599852 22.861787503118546 84-85 22.532868255274995 27.58672068591605 27.171252438785874 22.709158620023082 86-87 22.412011463378395 27.57470414764955 27.272731772249347 22.74055261672271 88-89 22.40868965144396 27.53068266783704 27.336731905050087 22.723895775668908 90-91 22.500117552918578 27.48941191499738 27.414136435454296 22.596334096629747 92-93 22.527576203682294 27.407870586878413 27.4431938717715 22.621359337667794 94-95 22.36819760308388 27.463771979847536 27.528644184759983 22.639386232308606 96-97 22.15975488669366 27.472020771623594 27.682541324908577 22.68568301677417 98-99 22.212658925709434 28.108808074091087 27.820049648829947 21.858483351369536 100-101 25.169299963314256 35.81116259588904 29.020630207560917 9.998907233235787 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2957.0 1 2848.0 2 4158.5 3 5918.5 4 7862.0 5 12022.5 6 15536.5 7 18216.0 8 19922.0 9 19790.5 10 18724.0 11 17638.0 12 19328.5 13 25206.0 14 38600.5 15 57061.0 16 71517.0 17 78725.5 18 80711.5 19 79726.5 20 77543.0 21 76184.0 22 77974.5 23 86231.0 24 101862.0 25 124704.5 26 154489.5 27 187218.5 28 221877.0 29 259354.0 30 294313.0 31 328647.0 32 365043.5 33 399207.0 34 431867.0 35 464240.0 36 500394.5 37 533393.5 38 559514.5 39 581701.0 40 601939.5 41 621686.0 42 636496.5 43 652208.0 44 667650.0 45 678257.5 46 684223.5 47 684436.5 48 681260.5 49 672542.0 50 659739.0 51 644264.0 52 620828.5 53 591780.0 54 560457.5 55 523254.5 56 481527.5 57 436834.5 58 389676.0 59 341256.5 60 290727.5 61 240391.5 62 194197.0 63 153467.5 64 117043.5 65 88713.0 66 67772.0 67 52116.5 68 40031.5 69 28834.0 70 20236.5 71 14496.5 72 10152.5 73 6993.0 74 4790.5 75 3273.5 76 2277.0 77 1526.5 78 1053.0 79 735.0 80 517.0 81 363.0 82 260.5 83 184.5 84 124.0 85 89.0 86 71.5 87 61.0 88 42.5 89 27.0 90 19.0 91 14.0 92 11.5 93 7.0 94 2.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012064634616997414 3 6.5214241172959E-6 4 1.9564272351887697E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0015749239243269596 18-19 0.0012586348546381086 20-21 1.6304365193780315E-5 22-23 0.00256662562239856 24-25 1.7942488517459803E-4 26-27 0.0014328168654098982 28-29 6.433275487192442E-4 30-31 2.2244591121352783E-4 32-33 0.0010803400634688295 34-35 0.01697160378718269 36-37 0.03249584624746459 38-39 0.007954661653438234 40-41 0.004705399071990738 42-43 0.00743959527777357 44-45 0.005294198543444503 46-47 0.0030560003046814638 48-49 0.0013835986849790613 50-51 1.7077278938348444E-4 52-53 1.1409367517663172E-4 54-55 0.004661699776473172 56-57 0.012178271153891192 58-59 0.009924133258196022 60-61 0.008442981910318188 62-63 0.0019258642503279396 64-65 0.0014467220944239844 66-67 0.0015608773548972954 68-69 0.0 70-71 0.0 72-73 6.535176901004496E-4 74-75 8.799082023729329E-4 76-77 7.582179113817205E-5 78-79 9.048432713694539E-4 80-81 0.002724710520395108 82-83 0.004665154284332619 84-85 0.013048413438810347 86-87 0.008438141567864113 88-89 0.07818248922038913 90-91 0.0 92-93 0.0 94-95 1.439633748315144E-4 96-97 0.009015131070053238 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 476.0 20-21 1551.0 22-23 3173.0 24-25 7316.0 26-27 8149.0 28-29 16576.0 30-31 53952.0 32-33 71470.0 34-35 99859.0 36-37 145653.0 38-39 158019.0 40-41 166807.0 42-43 184684.0 44-45 210360.0 46-47 207564.0 48-49 191940.0 50-51 180480.0 52-53 163505.0 54-55 179402.0 56-57 186430.0 58-59 191925.0 60-61 189157.0 62-63 189135.0 64-65 204484.0 66-67 213462.0 68-69 215963.0 70-71 211931.0 72-73 206713.0 74-75 211413.0 76-77 210657.0 78-79 223026.0 80-81 226705.0 82-83 220515.0 84-85 221613.0 86-87 232736.0 88-89 248855.0 90-91 270190.0 92-93 293815.0 94-95 371547.0 96-97 450535.0 98-99 1230246.0 100-101 7062085.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.11145368968558 #Duplication Level Percentage of deduplicated Percentage of total 1 90.70148448613736 78.10436680913753 2 6.508008065572595 11.208280703013093 3 1.5592223191967565 4.02800701594307 4 0.5610432404430611 1.9324899606929518 5 0.25518289475936856 1.0987085012235638 6 0.13304123903944642 0.6873824696618208 7 0.08053381381040654 0.48544186448720095 8 0.05178751419439961 0.3567598504203981 9 0.0308559224206286 0.2391343501118842 >10 0.11542851411312743 1.6035376867679252 >50 0.002738613324461308 0.15847241630090816 >100 6.480112646754801E-4 0.08104862950169338 >500 2.5365723793262987E-5 0.016369742737975965 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.521424117295899E-6 0.0 2 0.0 0.0 0.0 6.521424117295899E-6 0.0 3 0.0 0.0 0.0 1.3042848234591798E-5 0.0 4 0.0 3.912854470377539E-5 0.0 2.6085696469183597E-5 0.0 5 0.0 4.56499688210713E-5 0.0 2.6085696469183597E-5 0.0 6 0.0 5.217139293836719E-5 0.0 2.6085696469183597E-5 6.521424117295899E-6 7 0.0 5.86928170556631E-5 0.0 3.26071205864795E-5 6.521424117295899E-6 8 0.0 7.17356652902549E-5 0.0 5.217139293836719E-5 6.521424117295899E-6 9 1.3042848234591798E-5 1.8912129940158108E-4 0.0 8.477851352484669E-5 1.9564272351887697E-5 10-11 1.3042848234591798E-5 1.8912129940158108E-4 0.0 8.477851352484669E-5 1.9564272351887697E-5 12-13 1.3042848234591798E-5 1.9238201146022904E-4 0.0 8.803922558349464E-5 1.9564272351887697E-5 14-15 1.3042848234591798E-5 2.673783888091319E-4 0.0 9.782136175943848E-5 2.9346408527831545E-5 16-17 1.3042848234591798E-5 2.836819491023716E-4 0.0 1.1086420999403029E-4 3.26071205864795E-5 18-19 1.3042848234591798E-5 3.1954978174749906E-4 0.0 1.5325346675645364E-4 4.2389256762423345E-5 20-21 1.3042848234591798E-5 3.554176143926265E-4 0.0 2.445534043985962E-4 5.5432104997015145E-5 22-23 1.3042848234591798E-5 4.1084971938964163E-4 0.0 5.347567776182638E-4 6.847495323160694E-5 24-25 1.3042848234591798E-5 4.499782640934171E-4 0.0 0.0016140524690307352 7.825708940755079E-5 26-27 1.3042848234591798E-5 4.695425364453048E-4 0.0 0.005109535795901337 7.825708940755079E-5 28-29 1.3042848234591798E-5 4.728032485039527E-4 0.0 0.029649654749285805 8.151780146619875E-5 30-31 1.3042848234591798E-5 5.021496570317843E-4 0.0 0.047189024912753126 8.477851352484669E-5 32-33 1.3042848234591798E-5 5.151925052663761E-4 0.0 0.06332954960306048 9.12999376421426E-5 34-35 1.9564272351887697E-5 5.83667458497983E-4 0.0 0.08640560884211201 9.782136175943848E-5 36-37 1.9564272351887697E-5 6.586638358468858E-4 0.0 0.1154683354208412 9.782136175943848E-5 38-39 1.9564272351887697E-5 6.749673961401255E-4 0.0 0.1624878033065446 9.782136175943848E-5 40-41 1.9564272351887697E-5 7.173566529025489E-4 0.0 0.23921887947064818 9.782136175943848E-5 42-43 1.9564272351887697E-5 7.564851976063243E-4 0.0 0.2801799443513837 9.782136175943848E-5 44-45 1.9564272351887697E-5 8.575672714244108E-4 0.0 0.33465992142727363 9.782136175943848E-5 46-47 1.9564272351887697E-5 9.293029367146656E-4 0.0 0.3981329423609147 1.0108207381808644E-4 48-49 1.9564272351887697E-5 9.358243608319616E-4 0.0 0.448775061343776 1.0434278587673439E-4 50-51 2.6085696469183597E-5 0.0010206028743568083 0.0 0.5016442466626938 1.1086420999403029E-4 52-53 2.6085696469183597E-5 0.0010303850105327522 0.0 0.5602001138118937 1.173856341113262E-4 54-55 2.6085696469183597E-5 0.001040167146708696 0.0 0.6988945012264842 1.239070582286221E-4 56-57 2.6085696469183597E-5 0.0010532099949432877 0.0 0.8225341810662972 1.30428482345918E-4 58-59 2.6085696469183597E-5 0.0010792956914124714 0.0 0.9246205541984471 1.3694990646321388E-4 60-61 2.6085696469183597E-5 0.001108642099940303 0.0 0.9884848605791259 1.3694990646321388E-4 62-63 2.6085696469183597E-5 0.0011282063722921907 0.0 1.0416083814386183 1.3694990646321388E-4 64-65 2.6085696469183597E-5 0.0012781991269899963 0.0 1.065026815443828 1.3694990646321388E-4 66-67 2.6085696469183597E-5 0.00128798126316594 0.0 1.076305618454691 1.4021061852186184E-4 68-69 2.6085696469183597E-5 0.0013238490958110676 0.0 1.0870040147191151 1.434713305805098E-4 70-71 2.6085696469183597E-5 0.001349934792280251 0.0 1.0969654900582846 1.434713305805098E-4 72-73 2.6085696469183597E-5 0.0013662383525734909 0.0 1.1052150915666639 1.5651417881510157E-4 74-75 2.6085696469183597E-5 0.0013890633369840265 0.0 1.1136733786467965 1.5651417881510157E-4 76-77 2.6085696469183597E-5 0.0014118883213945623 0.0 1.1215316947081382 1.5651417881510157E-4 78-79 2.6085696469183597E-5 0.001421670457570506 0.0 1.1287704754783365 1.5651417881510157E-4 80-81 2.6085696469183597E-5 0.0014281918816878019 0.0 1.13310396180428 1.630356029323975E-4 82-83 2.6085696469183597E-5 0.001437974017863746 0.0 1.1361233811705878 1.6955702704969338E-4 84-85 2.6085696469183597E-5 0.0014412347299223938 0.0 1.1391851897936582 1.6955702704969338E-4 86-87 2.6085696469183597E-5 0.0014607990022742815 0.0 1.1396156037853997 1.6955702704969338E-4 88-89 2.6085696469183597E-5 0.0015064489710953526 0.0 1.1397166858592178 1.6955702704969338E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15975 0.0 44.11031 1 GTATCAA 27910 0.0 32.59009 1 TCAACGC 34000 0.0 26.012186 4 ATCAACG 34420 0.0 25.659964 3 CAACGCA 34885 0.0 25.386633 5 AACGCAG 36170 0.0 24.330114 6 TATCAAC 36825 0.0 24.298958 2 ACGCAGA 43215 0.0 20.326792 7 CGCAGAG 43770 0.0 20.09643 8 GTACATG 41815 0.0 19.431273 1 TACATGG 41990 0.0 18.941214 2 ACATGGG 42870 0.0 18.058367 3 GTGGTAT 7965 0.0 16.801243 1 GCAGAGT 52470 0.0 16.520638 9 CATGGGG 32810 0.0 16.387661 4 AGAGTAC 46450 0.0 16.348719 10-11 GAGTACT 28170 0.0 16.209042 12-13 CAGAGTA 50420 0.0 15.370438 10-11 TGGTATC 8160 0.0 15.029018 2 AGTACTT 31500 0.0 14.635017 12-13 >>END_MODULE