##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139926_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14191782 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.530888932764046 31.0 18.0 33.0 18.0 33.0 2 28.998937060899046 31.0 27.0 33.0 18.0 33.0 3 31.145700589256514 33.0 30.0 33.0 27.0 33.0 4 31.426992536948497 33.0 31.0 33.0 29.0 33.0 5 32.56097852968711 33.0 33.0 33.0 31.0 34.0 6 36.75504217863549 38.0 37.0 38.0 35.0 38.0 7 36.96614153176817 38.0 38.0 38.0 35.0 38.0 8 37.19667748560399 38.0 38.0 38.0 36.0 38.0 9 37.24509839567716 38.0 38.0 38.0 36.0 38.0 10-11 37.2953070305054 38.0 38.0 38.0 36.5 38.0 12-13 37.31672005672015 38.0 38.0 38.0 37.0 38.0 14-15 37.32908605135 38.0 38.0 38.0 37.0 38.0 16-17 37.34714276896305 38.0 38.0 38.0 37.0 38.0 18-19 37.346422845277644 38.0 38.0 38.0 37.0 38.0 20-21 37.31122097996158 38.0 38.0 38.0 37.0 38.0 22-23 37.325685728177135 38.0 38.0 38.0 37.0 38.0 24-25 37.347510182366086 38.0 38.0 38.0 37.0 38.0 26-27 37.31929647547165 38.0 38.0 38.0 37.0 38.0 28-29 37.29104687485851 38.0 38.0 38.0 37.0 38.0 30-31 37.28970034152232 38.0 38.0 38.0 37.0 38.0 32-33 37.22643976714686 38.0 38.0 38.0 37.0 38.0 34-35 37.22955148039468 38.0 38.0 38.0 37.0 38.0 36-37 37.22161518256364 38.0 38.0 38.0 37.0 38.0 38-39 37.20830811129121 38.0 38.0 38.0 37.0 38.0 40-41 37.198084252435976 38.0 38.0 38.0 37.0 38.0 42-43 37.164085091984575 38.0 38.0 38.0 36.0 38.0 44-45 37.12537087298229 38.0 38.0 38.0 36.0 38.0 46-47 37.07881064557 38.0 38.0 38.0 36.0 38.0 48-49 37.02193120802893 38.0 38.0 38.0 36.0 38.0 50-51 36.987955222111225 38.0 38.0 38.0 36.0 38.0 52-53 36.96058292666808 38.0 38.0 38.0 36.0 38.0 54-55 36.94519225828114 38.0 38.0 38.0 36.0 38.0 56-57 36.92791489979834 38.0 38.0 38.0 36.0 38.0 58-59 36.94757347603252 38.0 38.0 38.0 36.0 38.0 60-61 36.98738900844823 38.0 38.0 38.0 36.0 38.0 62-63 37.01014357588164 38.0 38.0 38.0 36.0 38.0 64-65 37.019113389521664 38.0 38.0 38.0 36.0 38.0 66-67 37.03523609063024 38.0 38.0 38.0 36.0 38.0 68-69 37.04538397185412 38.0 38.0 38.0 36.0 38.0 70-71 37.041294343034636 38.0 38.0 38.0 36.0 38.0 72-73 37.028411756479784 38.0 38.0 38.0 36.0 38.0 74-75 37.03285687494542 38.0 38.0 38.0 36.0 38.0 76-77 37.03881170885595 38.0 38.0 38.0 36.0 38.0 78-79 37.021198405275655 38.0 38.0 38.0 36.0 38.0 80-81 37.005494650364454 38.0 38.0 38.0 36.0 38.0 82-83 37.01048790387827 38.0 38.0 38.0 36.0 38.0 84-85 36.965663026681526 38.0 38.0 38.0 36.0 38.0 86-87 36.959992373590126 38.0 38.0 38.0 36.0 38.0 88-89 36.972909111253976 38.0 38.0 38.0 36.0 38.0 90-91 36.95837014164505 38.0 38.0 38.0 36.0 38.0 92-93 36.966154453186306 38.0 38.0 38.0 36.0 38.0 94-95 36.91864712694611 38.0 38.0 38.0 35.5 38.0 96-97 36.89369520200991 38.0 38.0 38.0 35.0 38.0 98-99 36.969621510361186 38.0 38.0 38.0 35.0 38.0 100 35.469240384505255 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 32.0 19 76.0 20 173.0 21 396.0 22 1015.0 23 2719.0 24 6398.0 25 13046.0 26 23503.0 27 39604.0 28 62359.0 29 94030.0 30 131446.0 31 174455.0 32 224214.0 33 291060.0 34 427190.0 35 791900.0 36 2424810.0 37 9483353.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.791333886047575 20.831985722441342 13.22477332304005 24.151907068471033 2 15.732080027216536 20.678240271624198 40.63106090094742 22.95861880021185 3 18.556859173851457 26.186535277951705 30.126977711467102 25.129627836729735 4 12.768368341621933 17.281860727567548 37.94035167676617 32.009419254044346 5 13.284041001591543 37.4509046205501 35.55745672651621 13.707597651342157 6 30.722431091645653 37.122587013241784 18.179966273358293 13.975015621754276 7 26.671294697170516 32.765483573521635 22.776857761766635 17.786363967541217 8 24.9820987949223 36.33082864435207 20.8234667077045 17.863605853021134 9 26.07358258462538 15.844930537969088 20.948355886526443 37.13313099087909 10-11 24.779551997064218 26.230824994352364 28.567885273322265 20.421737735261154 12-13 25.41753037074555 24.143440901220156 28.79751112298653 21.641517605047767 14-15 22.5696920936356 25.282885546015294 26.61496984663378 25.53245251371533 16-17 21.802526278940867 28.39392896536883 27.41596862184044 22.38757613384986 18-19 21.860404845564847 27.309611294762 29.52154986597173 21.308433993701424 20-21 22.761129007925074 26.317202101900293 29.467875189575988 21.453793700598645 22-23 22.581845046720527 26.242071399281976 29.328520426970268 21.84756312702723 24-25 22.146957762016857 26.440955035667145 29.468435803541293 21.943651398774698 26-27 22.085677577566752 26.461911843212793 29.460822299156458 21.991588280063993 28-29 22.04997225816297 26.600705407077257 29.427107794313812 21.92221454044596 30-31 22.218116471677256 26.541327038989433 29.31300876186624 21.927547727467072 32-33 21.97294056231502 26.647253128423117 29.42916168477424 21.950644624487623 34-35 22.129849765709018 26.659106971066844 29.35802420085786 21.85301906236628 36-37 22.07151234539996 26.633002662475107 29.265762888657022 22.029722103467908 38-39 21.97713886353588 26.648217085874165 29.46586288604383 21.908781164546124 40-41 22.201168568538392 26.565980151528223 29.299091219849515 21.93376006008387 42-43 22.104884267842973 26.685017520900466 29.019429483010363 22.190668728246198 44-45 22.213185446360797 26.771166269951056 28.900420123809578 22.115228159878566 46-47 22.375833800341212 26.862057600993328 28.463502730831625 22.29860586783383 48-49 22.250499957269255 27.07023261345088 28.3584074611436 22.320859968136265 50-51 22.227505510952568 27.149868263129456 28.25353920307561 22.36908702284236 52-53 22.40886280871079 27.151231120707457 28.08200690646584 22.35789916411591 54-55 22.344577386649764 26.98996511460881 28.157435846761548 22.508021651979877 56-57 22.399902498054196 27.07109628454974 28.04976615875215 22.479235058643916 58-59 22.3036665552709 27.13415367106895 28.068481011267636 22.493698762392516 60-61 22.329475944800745 27.12435737580171 28.17683195637299 22.369334723024554 62-63 22.285830880517047 27.24356113860357 28.0515118674437 22.41909611343568 64-65 22.296611459187297 27.24386533800064 27.993288767501635 22.46623443531043 66-67 22.388255553054666 27.238489807109122 27.823490474861114 22.549764164975098 68-69 22.37964482161125 27.26947703941283 27.80670073951827 22.54417739945765 70-71 22.436821498145576 27.028048490874575 27.86448219992233 22.670647811057517 72-73 22.41532566559852 27.0447219631408 27.829529498682525 22.710422872578153 74-75 22.37636184309138 27.16321927886063 27.770499368322433 22.689919509725563 76-77 22.60422783855736 27.11360869881804 27.56516750246176 22.71699596016284 78-79 22.51210058339281 27.146688366811222 27.55730362275588 22.78390742704009 80-81 22.50203842889487 27.237353627025442 27.49076791609923 22.76984002798046 82-83 22.587780927879997 27.189908944811613 27.552234436134253 22.670075691174134 84-85 22.605846113027305 27.2479316428131 27.43591409252197 22.71030815163763 86-87 22.574244660846666 27.299418736043847 27.50781375610105 22.61852284700844 88-89 22.640263520898387 27.304998021899856 27.40973244298769 22.64500601421407 90-91 22.65531883642993 27.26793647972723 27.417768355573358 22.658976328269482 92-93 22.71780951383687 27.24754736305373 27.42146838708229 22.613174736027116 94-95 22.662814597304024 27.315910435281232 27.42309412183113 22.59818084558361 96-97 22.727806893418226 27.340135195391657 27.496375817731927 22.435682093458183 98-99 23.8269681804304 29.334801727061233 27.60221957300459 19.236010519503775 100 30.456792687800444 40.50148633141584 29.041720980783715 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2983.0 1 3238.5 2 5386.0 3 8293.5 4 11091.5 5 15192.5 6 18451.0 7 21624.0 8 24826.0 9 26704.5 10 27461.0 11 28515.5 12 32496.0 13 40740.5 14 55350.5 15 71064.5 16 80960.5 17 84217.5 18 81755.5 19 74532.0 20 64942.5 21 56413.0 22 52720.0 23 56545.5 24 67466.5 25 84468.0 26 106325.5 27 130774.5 28 157213.0 29 186211.5 30 214685.5 31 243560.0 32 273131.5 33 302644.0 34 331588.0 35 361122.5 36 393074.5 37 423391.0 38 451607.0 39 476618.0 40 504316.5 41 532484.5 42 553244.5 43 579892.0 44 608005.5 45 623368.5 46 627438.5 47 629146.5 48 630223.0 49 625293.0 50 619139.0 51 607604.5 52 587176.0 53 561688.0 54 528969.0 55 490851.5 56 450216.5 57 405575.5 58 359809.0 59 310062.0 60 259138.5 61 213319.5 62 171321.5 63 133686.0 64 101189.5 65 75545.5 66 56058.5 67 42547.0 68 32134.5 69 23426.5 70 16932.5 71 12036.0 72 8470.0 73 5568.5 74 3610.0 75 2397.5 76 1549.5 77 999.0 78 646.5 79 412.0 80 273.5 81 191.0 82 144.0 83 107.5 84 71.0 85 42.5 86 25.0 87 17.0 88 9.0 89 3.0 90 1.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0028889958991760163 3 0.0 4 0.0 5 0.003720463011621796 6 2.3957526968776716E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 6.222361733265946E-5 44-45 3.3274779580465666E-5 46-47 0.0 48-49 0.0 50-51 1.5301557939597787E-5 52-53 0.0011815950127114139 54-55 0.002459594437434232 56-57 0.002638310992680262 58-59 0.0018269314775318276 60-61 0.004539444756687773 62-63 0.001806071083540957 64-65 0.0018421297289433571 66-67 2.2466371586130825E-4 68-69 2.1905613094299286E-4 70-71 2.1759969361963136E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 8.05697787325595E-5 80-81 3.626277968348758E-4 82-83 0.0 84-85 4.643376172812346E-6 86-87 0.0 88-89 0.0 90-91 2.891297060919436E-5 92-93 2.3920368799364443E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 149.0 20-21 559.0 22-23 1125.0 24-25 1604.0 26-27 4895.0 28-29 13531.0 30-31 35089.0 32-33 49461.0 34-35 69887.0 36-37 102777.0 38-39 112648.0 40-41 109600.0 42-43 128803.0 44-45 156975.0 46-47 157472.0 48-49 143617.0 50-51 125995.0 52-53 118404.0 54-55 129709.0 56-57 132979.0 58-59 137452.0 60-61 134639.0 62-63 130618.0 64-65 139222.0 66-67 147920.0 68-69 150404.0 70-71 148643.0 72-73 133303.0 74-75 131170.0 76-77 137584.0 78-79 140063.0 80-81 136992.0 82-83 129256.0 84-85 125669.0 86-87 128836.0 88-89 134445.0 90-91 134949.0 92-93 132031.0 94-95 150388.0 96-97 424203.0 98-99 3107842.0 100-101 6460874.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.1934953922289 #Duplication Level Percentage of deduplicated Percentage of total 1 88.75216313212246 73.83602674582578 2 7.564927035713724 12.58705444976395 3 2.012164526794962 5.021970008649694 4 0.7464777432414842 2.484083707710474 5 0.35526580463075175 1.477790204028247 6 0.19479713689613742 0.9723512826472914 7 0.11273236070786052 0.6565019391773137 8 0.06633557282643364 0.44149505378214177 9 0.0427246431908042 0.3198971165785914 >10 0.1482364241577215 1.882639335535354 >50 0.003427543367316474 0.19552748024279995 >100 7.17445310270864E-4 0.0893817158677833 >500 1.531582012504732E-5 0.010015028162470461 >1k 1.531521992388483E-5 0.025265932028085025 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.818532584561967E-5 2 0.0 2.113899438421475E-5 0.0 0.0 2.818532584561967E-5 3 0.0 2.818532584561967E-5 0.0 0.0 2.818532584561967E-5 4 7.046331461404918E-6 9.864864045966884E-5 0.0 0.0 3.523165730702459E-5 5 7.046331461404918E-6 1.0569497192107375E-4 0.0 0.0 3.523165730702459E-5 6 7.046331461404918E-6 1.0569497192107375E-4 0.0 0.0 5.637065169123934E-5 7 7.046331461404918E-6 1.1274130338247868E-4 0.0 0.0 5.637065169123934E-5 8 7.046331461404918E-6 1.197876348438836E-4 0.0 0.0 7.046331461404917E-5 9 7.046331461404918E-6 2.113899438421475E-4 0.0 7.046331461404918E-6 8.4555977536859E-5 10-11 7.046331461404918E-6 2.113899438421475E-4 0.0 1.4092662922809835E-5 8.4555977536859E-5 12-13 1.0569497192107377E-5 2.1843627530355244E-4 0.0 1.4092662922809835E-5 8.4555977536859E-5 14-15 2.113899438421475E-5 2.924227556483041E-4 0.0 2.1138994384214754E-5 1.0921813765177622E-4 16-17 2.113899438421475E-5 2.99469087109709E-4 0.0 3.523165730702459E-5 1.4092662922809835E-4 18-19 2.113899438421475E-5 3.417470758781385E-4 0.0 4.22779887684295E-5 1.69111955073718E-4 20-21 3.523165730702459E-5 4.0868722476148517E-4 0.0 4.932432022983442E-5 1.7615828653512293E-4 22-23 4.932432022983442E-5 4.5801154499131963E-4 0.0 7.750964607545409E-5 2.466216011491721E-4 24-25 4.932432022983442E-5 4.932432022983443E-4 0.0 1.1274130338247867E-4 3.0299225284041145E-4 26-27 4.932432022983442E-5 5.14382196682559E-4 0.0 1.9377411518863523E-4 3.0299225284041145E-4 28-29 5.637065169123934E-5 5.14382196682559E-4 0.0 5.566601854509884E-4 3.0299225284041145E-4 30-31 5.637065169123934E-5 5.707528483737983E-4 0.0 0.0016840732192757752 3.1003858430181635E-4 32-33 6.341698315264426E-5 5.707528483737983E-4 0.0 0.0037451251717367136 3.311775786860311E-4 34-35 6.341698315264426E-5 6.905404832176819E-4 0.0 0.006891312169254009 3.4527024160884096E-4 36-37 6.341698315264426E-5 8.06804952330863E-4 0.0 0.0118942075068515 3.5231657307024586E-4 38-39 6.694014888334671E-5 8.4555977536859E-4 0.0 0.025539428381862125 3.558397388009483E-4 40-41 7.046331461404917E-5 8.807914326756146E-4 0.0 0.04005487119235625 3.628860702623532E-4 42-43 7.046331461404917E-5 9.019304270598293E-4 0.0 0.04781640529709377 3.6993240172375816E-4 44-45 7.046331461404917E-5 9.900095703273908E-4 0.0 0.057420555078988675 3.8050189891586557E-4 46-47 7.046331461404917E-5 0.0010569497192107376 0.0 0.06775400016713898 4.122103904921876E-4 48-49 7.398648034475164E-5 0.001067519216402845 0.0 0.07777036033952607 4.721042079141295E-4 50-51 8.455597753685901E-5 0.0012190153428230507 0.0 0.08768454870572279 4.721042079141295E-4 52-53 9.160230899826393E-5 0.0012472006686686703 0.0 0.1185016793521772 4.967663680290467E-4 54-55 9.864864045966884E-5 0.001268339663052885 0.0 0.15811967799392634 5.249516938746663E-4 56-57 9.864864045966884E-5 0.0012965249888985048 0.0 0.2160933700926353 5.319980253360712E-4 58-59 9.864864045966884E-5 0.0013035713203599097 0.0 0.2561447181192609 5.531370197202859E-4 60-61 9.864864045966884E-5 0.0013176639832827195 0.0 0.2710829408174393 6.024613399501205E-4 62-63 9.864864045966884E-5 0.0013458493091283391 0.0 0.2829806714900215 6.200771686036327E-4 64-65 9.864864045966884E-5 0.0014867759383564375 0.0 0.2881244934568471 6.236003343343352E-4 66-67 9.864864045966884E-5 0.0014938222698178424 0.0 0.2933634408984016 6.271235000650376E-4 68-69 9.864864045966884E-5 0.001536100258586272 0.0 0.29905335355348606 6.341698315264425E-4 70-71 9.864864045966884E-5 0.0015607624187011892 0.0 0.30454949209338195 6.76447820294872E-4 72-73 9.864864045966884E-5 0.0015783782473547015 0.0 0.30859056318649764 7.469111349089212E-4 74-75 9.864864045966884E-5 0.001606563573200321 0.0 0.3118213061615518 7.469111349089212E-4 76-77 9.864864045966884E-5 0.001666457390622263 0.0 0.31482304336411027 7.504343006396237E-4 78-79 9.864864045966884E-5 0.0016840732192757752 0.0 0.31710605475760545 7.539574663703261E-4 80-81 9.864864045966884E-5 0.00169111955073718 0.0 0.3178952438812829 7.68050129293136E-4 82-83 9.864864045966884E-5 0.00169111955073718 0.0 0.31834620909481276 8.244207809843753E-4 84-85 9.864864045966884E-5 0.0017052122136599899 0.0 0.31850122838696365 8.244207809843753E-4 86-87 9.864864045966884E-5 0.0017298743737749072 0.0 0.3186210160218076 8.244207809843753E-4 88 9.864864045966884E-5 0.0017686291968126342 0.0 0.31862806235326896 8.244207809843753E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23125 0.0 53.98554 1 GTATCAA 40780 0.0 34.97368 1 TGGTATC 8785 0.0 28.326946 2 GTGGTAT 9175 0.0 28.164305 1 TCAACGC 51600 0.0 27.792435 4 ATCAACG 51770 0.0 27.701174 3 TATCAAC 52940 0.0 27.199402 2 CAACGCA 52960 0.0 27.070889 5 AACGCAG 54525 0.0 26.315168 6 ACGCAGA 62950 0.0 22.753567 7 CGCAGAG 63880 0.0 22.435314 8 GTACATG 51265 0.0 22.382956 1 TACATGG 51795 0.0 22.17798 2 ACATGGG 52160 0.0 21.496653 3 GCAGAGT 73505 0.0 19.497559 9 GAGTACT 45170 0.0 19.35887 12-13 CATGGGG 37570 0.0 19.350952 4 CAGAGTA 71435 0.0 18.797731 10-11 AGAGTAC 67510 0.0 17.67235 10-11 GTACTTT 50270 0.0 17.362274 14-15 >>END_MODULE