##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139925_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11172135 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.795269749246675 31.0 31.0 34.0 30.0 34.0 2 31.974721304388105 31.0 31.0 34.0 30.0 34.0 3 32.0021140990509 31.0 31.0 34.0 30.0 34.0 4 35.736660092274214 37.0 35.0 37.0 35.0 37.0 5 35.55089577775421 37.0 35.0 37.0 33.0 37.0 6 35.55804123383758 37.0 35.0 37.0 33.0 37.0 7 35.445524065006374 37.0 35.0 37.0 33.0 37.0 8 35.41271180486093 37.0 35.0 37.0 33.0 37.0 9 36.99004066814445 39.0 37.0 39.0 33.0 39.0 10-11 36.82824272173582 39.0 37.0 39.0 32.5 39.0 12-13 36.78903002872772 39.0 37.0 39.0 32.0 39.0 14-15 37.92255593939744 40.0 37.0 41.0 33.0 41.0 16-17 37.930371544919566 40.0 37.0 41.0 33.0 41.0 18-19 37.90087534746044 40.0 37.0 41.0 33.0 41.0 20-21 37.86459879794122 40.0 37.0 41.0 32.0 41.0 22-23 37.78493047878989 39.5 37.0 41.0 32.0 41.0 24-25 37.68852178502746 39.0 37.0 41.0 32.0 41.0 26-27 37.52529472393538 39.0 36.0 41.0 32.0 41.0 28-29 37.3813060764862 39.0 36.0 40.5 32.0 41.0 30-31 37.24938571851912 39.0 36.0 40.0 31.0 41.0 32-33 37.423507684549804 39.0 36.0 40.5 32.0 41.0 34-35 37.39551238454615 39.0 36.0 41.0 32.0 41.0 36-37 37.28585159214523 39.0 36.0 40.5 31.0 41.0 38-39 37.12000512730103 39.0 36.0 40.0 31.0 41.0 40-41 37.088973624329356 39.0 36.0 40.0 31.0 41.0 42-43 36.962155736840224 39.0 35.0 40.0 31.0 41.0 44-45 37.007637123262214 39.0 35.5 40.0 31.0 41.0 46-47 37.15494248929498 39.0 36.0 40.5 31.0 41.0 48-49 37.08303595426891 39.0 36.0 40.5 31.0 41.0 50-51 36.956611369704156 39.0 35.0 40.0 31.0 41.0 52-53 36.80511068557492 39.0 35.0 40.0 30.0 41.0 54-55 36.65613407480976 38.5 35.0 40.0 30.0 41.0 56-57 36.47767281357561 38.0 35.0 40.0 30.0 41.0 58-59 36.31155025966143 38.0 34.5 40.0 30.0 41.0 60-61 36.09909044810259 38.0 34.0 40.0 29.0 41.0 62-63 35.82284083945807 37.5 34.0 40.0 29.0 41.0 64-65 35.58416397474396 37.0 34.0 40.0 29.0 41.0 66-67 35.30217087761059 36.5 34.0 39.0 28.5 41.0 68-69 34.96936702089766 36.0 33.0 39.0 28.0 40.0 70-71 34.62058646219336 35.5 33.0 39.0 28.0 40.0 72-73 34.323221686832454 35.0 33.0 38.0 28.0 40.0 74-75 33.96732044131575 35.0 32.0 37.5 27.5 39.5 76-77 32.90312345572486 34.0 31.0 36.0 26.0 39.0 78-79 33.26266299307399 35.0 32.0 36.0 26.5 39.0 80-81 33.13334352967138 34.5 32.0 36.0 27.0 38.0 82-83 32.69709632516822 34.0 31.5 35.5 26.0 37.0 84-85 32.462549357284985 34.0 31.0 35.0 26.0 37.0 86-87 32.381388605782846 34.0 31.0 35.0 26.0 36.0 88-89 32.22060635843786 34.0 31.0 35.0 26.0 36.0 90-91 32.083036750640034 34.0 31.0 35.0 26.0 36.0 92-93 32.003964732714984 34.0 31.0 35.0 26.0 35.0 94-95 31.940418205808122 34.0 31.0 35.0 26.0 35.0 96-97 31.852310365682243 34.0 31.0 35.0 26.0 35.0 98-99 32.068810336144345 34.0 31.0 35.0 26.5 35.0 100-101 31.18607541169758 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 15.0 20 113.0 21 679.0 22 2761.0 23 9161.0 24 23232.0 25 48380.0 26 86701.0 27 137177.0 28 195953.0 29 263742.0 30 336451.0 31 421597.0 32 525620.0 33 662436.0 34 859949.0 35 1132939.0 36 1564520.0 37 2085824.0 38 1897212.0 39 889918.0 40 27750.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.917001987534164 21.761614946471735 14.392190928591535 24.929192137402563 2 15.011915490244728 22.594211320216985 39.11394832014144 23.279924869396844 3 17.743084512151796 26.37040751305055 31.17596254895999 24.710545425837662 4 12.79296556825501 18.348995518491904 38.001529162025655 30.856509751227428 5 12.940928479650488 37.98060979392032 35.96388693835153 13.11457478807766 6 30.825101916509247 38.04581666798691 17.971229312928998 13.157852102574843 7 26.462677008467946 32.531534930431825 23.348491581958147 17.65729647914208 8 24.777860274692348 36.790855105134334 21.058785988533078 17.372498631640237 9 25.581466747403248 15.841403635025891 21.069168963676148 37.50796065389471 10-11 24.42936824519217 26.582202058961872 29.085062971401616 19.903366724444343 12-13 24.792741047257305 24.2212880528207 29.207935636295122 21.778035263626872 14-15 22.00216878868721 25.69915687556586 26.43389558038817 25.86477875535876 16-17 21.905655808142434 28.70462793263376 27.248453060069817 22.14126319915399 18-19 21.94064242472198 27.989687777983253 28.739912491834485 21.32975730546028 20-21 22.57745661656079 27.240616874444573 28.54430864704109 21.637617861953547 22-23 22.361296549598958 27.179518536803528 28.415488968447328 22.043695945150183 24-25 22.149486592260242 27.303161909667516 28.506358667543836 22.04099283052841 26-27 22.168202353667382 27.3653756951355 28.427547445258742 22.03887450593837 28-29 22.084454103003008 27.478002019357433 28.429958558712315 22.007585318927244 30-31 22.322100420939666 27.355050501763582 28.32161163990078 22.001237437395968 32-33 22.17225664277133 27.505799393975654 28.26880611420954 22.053137849043477 34-35 22.2238499535554 27.501334739693206 28.326128813593655 21.94868649315774 36-37 22.242781850417504 27.45080167381655 28.257572041340673 22.04884443442527 38-39 22.11155404992759 27.533796905682784 28.329508365138224 22.025140679251397 40-41 22.31786248260919 27.391461398257665 28.18993203455417 22.100744084578974 42-43 22.186294500403598 27.552754692124786 28.006599457723397 22.254351349748216 44-45 22.273855961866357 27.584153749510993 27.876961734064025 22.265028554558626 46-47 22.376958319600824 27.532378381071364 27.666040400401627 22.42462289892618 48-49 22.27181285659814 27.684889016949594 27.643963722934306 22.399334403517965 50-51 22.27733905707139 27.767622809696007 27.570708054733394 22.38433007849921 52-53 22.400522941266463 27.63885163528423 27.46179270306195 22.49883272038736 54-55 22.335066834299646 27.514189547575285 27.53527341400281 22.61547020412226 56-57 22.309762054947868 27.606487205517922 27.578291470675797 22.50545926885841 58-59 22.31568647670918 27.64919446101614 27.511618187285663 22.523500874989015 60-61 22.256609068886057 27.43000618734714 27.695527674550007 22.6178570692168 62-63 22.489227227803813 27.557397022663434 27.61690983400882 22.336465915523938 64-65 22.152885381939363 27.577022050386823 27.58677287748404 22.683319690189776 66-67 22.269169178529328 27.57823587707808 27.403995162766044 22.748599781626556 68-69 22.14627661071218 27.882116094051028 27.448296972905105 22.523310322331685 70-71 22.137826757675942 27.704807202399785 27.511157435459104 22.646208604465173 72-73 22.21897411288566 27.639329812438618 27.134926715500168 23.00676935917555 74-75 22.13179960581028 27.719594177879927 27.13566401174385 23.01294220456595 76-77 22.35732324515313 27.345742932417338 27.379735953273244 22.91719786915629 78-79 22.286945909429807 27.331075568536527 27.30172639105956 23.080252130974106 80-81 22.631596872670972 27.33463040391956 27.014380178323172 23.019392545086294 82-83 22.52947069286796 27.66653929962152 27.062153239462443 22.741836768048078 84-85 22.327520594834755 27.33028471704595 27.077210848954476 23.264983839164824 86-87 22.236955383940245 27.648558903468313 27.174150516273514 22.94033519631793 88-89 22.576639841308307 27.273591401492492 27.157368815233674 22.992399941965523 90-91 22.69531080455508 27.580184339810483 27.200733284526198 22.523771571108238 92-93 22.312172409706086 27.455143277211768 27.25980831581713 22.972875997265017 94-95 22.455590649008098 27.159581076610838 27.436789025514386 22.94803924886668 96-97 22.324047090831662 27.566358100135645 27.540226263537406 22.569368545495283 98-99 22.470545892620226 27.95022125101363 27.800643215693952 21.77858964067219 100-101 25.069522739947224 35.82059492238158 29.09101808658196 10.018864251089232 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2225.0 1 2088.5 2 2860.0 3 4004.0 4 5277.0 5 8046.0 6 10479.5 7 12543.0 8 14076.5 9 14288.5 10 13737.0 11 12942.0 12 13922.0 13 17830.0 14 27682.5 15 41297.5 16 51611.5 17 56419.5 18 57542.0 19 57034.5 20 55520.0 21 54284.0 22 55395.0 23 61234.5 24 72297.5 25 88504.0 26 109360.0 27 131695.5 28 154859.5 29 179344.0 30 202098.0 31 224870.0 32 249128.5 33 272104.5 34 294479.5 35 316060.5 36 339584.5 37 362200.0 38 381405.5 39 397823.5 40 412786.5 41 429044.5 42 441595.5 43 453623.0 44 466072.5 45 476792.0 46 484264.5 47 487376.0 48 488643.0 49 485940.0 50 479715.5 51 469789.5 52 453299.0 53 433630.0 54 413447.0 55 388303.0 56 359713.5 57 328912.0 58 294243.5 59 256563.5 60 218270.0 61 181078.0 62 146448.5 63 115499.5 64 87830.0 65 66199.5 66 50215.0 67 38683.0 68 29909.5 69 21994.0 70 15746.5 71 11464.0 72 8239.5 73 5754.5 74 4039.0 75 2813.0 76 1935.0 77 1298.5 78 881.5 79 615.5 80 431.5 81 304.5 82 231.5 83 174.5 84 147.0 85 119.0 86 94.0 87 74.5 88 50.0 89 33.5 90 26.5 91 20.5 92 16.5 93 9.0 94 3.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.001100953398790831 3 1.7901681281151722E-5 4 2.685252192172758E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.00142765908217185 18-19 0.0013336752554458033 20-21 1.3426969437666436E-5 22-23 0.002627540926076128 24-25 1.2536921794368422E-4 26-27 0.001142261247241775 28-29 4.033678888145995E-4 30-31 1.2118523468328599E-4 32-33 9.678505264251554E-4 34-35 0.016586543579956568 36-37 0.03255272007635787 38-39 0.007721683901514074 40-41 0.004619130048412926 42-43 0.007123025446167105 44-45 0.0049170070669684075 46-47 0.0028885337807319274 48-49 0.001261612781729052 50-51 1.9154617348209236E-4 52-53 1.0430998423876138E-4 54-55 0.004514897605236035 56-57 0.011470204085741606 58-59 0.009631317294322962 60-61 0.00796661996620886 62-63 0.0018434463218452918 64-65 0.0012983124502714274 66-67 0.0013296084037329326 68-69 0.0 70-71 1.1223794894127347E-5 72-73 5.022432007685234E-4 74-75 6.733279308441135E-4 76-77 7.089258969212293E-5 78-79 6.738593126153683E-4 80-81 0.0023686676569661135 82-83 0.004552194035423584 84-85 0.012328898996740636 86-87 0.007938576681693212 88-89 0.07447150562134047 90-91 6.845960079152991E-6 92-93 0.0 94-95 9.46175841103014E-5 96-97 0.008491935626110338 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 378.0 20-21 1143.0 22-23 2303.0 24-25 4811.0 26-27 5753.0 28-29 11037.0 30-31 30184.0 32-33 42578.0 34-35 61534.0 36-37 89418.0 38-39 95592.0 40-41 102300.0 42-43 116494.0 44-45 135880.0 46-47 136125.0 48-49 126438.0 50-51 117433.0 52-53 107041.0 54-55 119943.0 56-57 125107.0 58-59 78823.0 60-61 135877.0 62-63 133091.0 64-65 141829.0 66-67 150959.0 68-69 152663.0 70-71 150423.0 72-73 146054.0 74-75 150150.0 76-77 150581.0 78-79 161113.0 80-81 163895.0 82-83 158675.0 84-85 159677.0 86-87 171074.0 88-89 183805.0 90-91 200029.0 92-93 218614.0 94-95 280141.0 96-97 340605.0 98-99 980718.0 100-101 5331847.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.39728423277482 #Duplication Level Percentage of deduplicated Percentage of total 1 90.87696717066358 78.51523162856365 2 6.350825831635526 10.97388208977326 3 1.5414815257657588 3.9953945256346697 4 0.5539803139908351 1.914495785889121 5 0.2644046587870211 1.1421922228846053 6 0.13561320551723285 0.7029967597674045 7 0.08102130198750326 0.49000143197066615 8 0.051884573694261714 0.3586149008607585 9 0.032634726163596875 0.25375965409935464 >10 0.10853397210793417 1.4595661925226342 >50 0.0022043114860676835 0.12744974297376344 >100 4.319040981105972E-4 0.057517388909851835 >500 1.6504102555070315E-5 0.008897676150213396 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.6852521921727584E-5 0.0 1.7901681281151722E-5 0.0 3 0.0 2.6852521921727584E-5 0.0 1.7901681281151722E-5 0.0 4 0.0 1.163609283274862E-4 0.0 2.6852521921727584E-5 0.0 5 8.950840640575861E-6 1.163609283274862E-4 0.0 3.5803362562303445E-5 0.0 6 8.950840640575861E-6 1.163609283274862E-4 0.0 3.5803362562303445E-5 1.7901681281151722E-5 7 8.950840640575861E-6 1.163609283274862E-4 0.0 3.5803362562303445E-5 2.6852521921727584E-5 8 8.950840640575861E-6 1.163609283274862E-4 0.0 3.5803362562303445E-5 2.6852521921727584E-5 9 8.950840640575861E-6 2.327218566549724E-4 0.0 7.160672512460689E-5 3.5803362562303445E-5 10-11 4.4754203202879306E-5 2.327218566549724E-4 0.0 1.1188550800719828E-4 3.5803362562303445E-5 12-13 4.4754203202879306E-5 2.3719727697526033E-4 0.0 1.4321345024921378E-4 3.5803362562303445E-5 14-15 5.370504384345517E-5 2.9985316145929135E-4 0.0 1.4321345024921378E-4 4.9229623523167233E-5 16-17 6.265588448403104E-5 3.043285817795793E-4 0.0 1.7006597217094136E-4 6.265588448403104E-5 18-19 6.265588448403104E-5 3.3118110370130687E-4 0.0 2.4167269729554825E-4 6.713130480431897E-5 20-21 6.265588448403104E-5 3.7145988658389824E-4 0.0 4.2964035074764134E-4 7.160672512460689E-5 22-23 6.265588448403104E-5 4.1621408978677755E-4 0.0 6.936901496446292E-4 8.503298608547068E-5 24-25 6.265588448403104E-5 4.52017452349081E-4 0.0 0.0016961843013891258 1.0741008768691033E-4 26-27 6.265588448403104E-5 4.7439455395052065E-4 0.0 0.00426060014491411 1.0741008768691033E-4 28-29 6.265588448403104E-5 4.788699742708086E-4 0.0 0.023701826016244883 1.0741008768691033E-4 30-31 7.160672512460689E-5 5.012470758722483E-4 0.0 0.035803362562303445 1.0741008768691033E-4 32-33 8.055756576518276E-5 5.012470758722483E-4 0.0 0.04374275821049424 1.2978718928835E-4 34-35 8.055756576518276E-5 5.639029603562793E-4 0.0 0.054734390517121395 1.5663971121007757E-4 36-37 8.055756576518276E-5 6.355096854808862E-4 0.0 0.0711905110348201 1.6111513153036552E-4 38-39 8.950840640575861E-5 6.534113667620378E-4 0.0 0.10140407361708392 1.745413924912293E-4 40-41 8.950840640575861E-5 6.892147293243413E-4 0.0 0.16002312897221524 1.879676534520931E-4 42-43 8.950840640575861E-5 7.160672512460689E-4 0.0 0.1853361063037638 1.9244307377238104E-4 44-45 9.398382672604655E-5 8.771823827764345E-4 0.0 0.2247063788613367 2.1034475505353275E-4 46-47 9.845924704633448E-5 0.0010114449923850724 0.0 0.2714879474693065 2.461481176158362E-4 48-49 1.163609283274862E-4 0.0010114449923850724 0.0 0.3109835317958474 2.5062353793612414E-4 50-51 1.2531176896806207E-4 0.0011725601239154378 0.0 0.3513294459832431 2.5062353793612414E-4 52-53 1.2978718928835E-4 0.0011949372255168774 0.0 0.4018837939212156 2.685252192172759E-4 54-55 1.3873802992892583E-4 0.0011994126458371654 0.0 0.5292363545553289 2.8642690049842756E-4 56-57 1.4321345024921378E-4 0.0011994126458371654 0.0 0.6477096812739911 2.8642690049842756E-4 58-59 1.5216429088978965E-4 0.0012038880661574534 0.0 0.753871126691541 2.8642690049842756E-4 60-61 1.5216429088978965E-4 0.001226265167758893 0.0 1.277638517615478 2.953777411390034E-4 62-63 1.5216429088978965E-4 0.0012352160083994688 0.0 1.2918703542339938 3.1327942242015514E-4 64-65 1.5216429088978965E-4 0.001351576936726955 0.0 1.3063707160717266 3.1327942242015514E-4 66-67 1.5216429088978965E-4 0.0013605277773675309 0.0 1.3172325611890654 3.2223026306073103E-4 68-69 1.5216429088978965E-4 0.0013739540383283949 0.0 1.327915389493593 3.3118110370130687E-4 70-71 1.5216429088978965E-4 0.0013784294586486826 0.0 1.3387727591906113 3.3118110370130687E-4 72-73 1.5216429088978965E-4 0.0013829048789689704 0.0 1.3473610907852438 3.5803362562303445E-4 74-75 1.5216429088978965E-4 0.0014321345024921378 0.0 1.3554839786665664 3.5803362562303445E-4 76-77 1.5216429088978965E-4 0.0015305937495384723 0.0 1.3625506673523011 3.625090459433224E-4 78-79 1.5216429088978965E-4 0.0015574462714602 0.0 1.3691340106434446 3.669844662636103E-4 80-81 1.5216429088978965E-4 0.0015574462714602 0.0 1.3731529380910632 3.7145988658389824E-4 82-83 1.5216429088978965E-4 0.0015574462714602 0.0 1.3760798629805315 3.8936156786505E-4 84-85 1.5216429088978965E-4 0.0015798233730616395 0.0 1.3789754599277577 3.938369881853379E-4 86-87 1.5216429088978965E-4 0.001611151315303655 0.0 1.379382723176904 3.938369881853379E-4 88-89 1.5663971121007757E-4 0.0016290529965848068 0.0 1.379521461206833 3.938369881853379E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11730 0.0 43.507168 1 GTATCAA 19585 0.0 30.842482 1 ACCGAGG 12970 0.0 26.278973 92-93 GAGACCG 12985 0.0 25.94064 88-89 GACCGAG 13190 0.0 25.844254 90-91 AGACCGA 12870 0.0 25.51978 90-91 CGAGACC 13405 0.0 24.905725 88-89 ACGAGAC 13920 0.0 24.90192 86-87 TCAACGC 23575 0.0 24.830921 4 ATCAACG 24045 0.0 24.48053 3 CAACGCA 24335 0.0 24.122112 5 TATCAAC 25620 0.0 23.323933 2 AACGCAG 25085 0.0 23.239183 6 CACGAGA 14290 0.0 23.137249 86-87 CCACGAG 14905 0.0 22.686419 84-85 GCCCACG 14325 0.0 22.628164 82-83 CCCACGA 14390 0.0 22.330986 84-85 GTACATG 28370 0.0 20.662682 1 ATCTCCG 14855 0.0 20.521326 74-75 TACATGG 28560 0.0 20.241135 2 >>END_MODULE