##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139924_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10450063 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.843696923166874 31.0 31.0 34.0 30.0 34.0 2 32.022999669954146 31.0 31.0 34.0 30.0 34.0 3 32.0517133724457 33.0 31.0 34.0 30.0 34.0 4 35.7726885474279 37.0 35.0 37.0 35.0 37.0 5 35.59137538213884 37.0 35.0 37.0 33.0 37.0 6 35.59767314321454 37.0 35.0 37.0 33.0 37.0 7 35.48628826448223 37.0 35.0 37.0 33.0 37.0 8 35.45530280535151 37.0 35.0 37.0 33.0 37.0 9 37.038181779382576 39.0 37.0 39.0 33.0 39.0 10-11 36.87983670529068 39.0 37.0 39.0 33.0 39.0 12-13 36.83833552008251 39.0 37.0 39.0 32.5 39.0 14-15 37.98243072792958 40.0 37.0 41.0 33.0 41.0 16-17 37.99278688559102 40.0 37.0 41.0 33.0 41.0 18-19 37.96488265190363 40.0 37.0 41.0 33.0 41.0 20-21 37.9242162569315 40.0 37.0 41.0 33.0 41.0 22-23 37.84377198804148 40.0 37.0 41.0 32.5 41.0 24-25 37.747487211945284 39.5 37.0 41.0 32.0 41.0 26-27 37.5868979959636 39.0 36.5 41.0 32.0 41.0 28-29 37.443409741929784 39.0 36.0 41.0 32.0 41.0 30-31 37.3062233760854 39.0 36.0 40.0 31.5 41.0 32-33 37.48818833499499 39.0 36.0 41.0 32.0 41.0 34-35 37.461194196170176 39.0 36.0 41.0 32.0 41.0 36-37 37.35563762521669 39.0 36.0 41.0 31.5 41.0 38-39 37.193207035269836 39.0 36.0 40.0 31.0 41.0 40-41 37.16519449683159 39.0 36.0 40.0 31.0 41.0 42-43 37.03634523103057 39.0 35.5 40.0 31.0 41.0 44-45 37.07599555319756 39.0 35.5 40.0 31.0 41.0 46-47 37.21008948510523 39.0 36.0 41.0 31.0 41.0 48-49 37.13177851857404 39.0 36.0 41.0 31.0 41.0 50-51 37.00315521837567 39.0 35.0 40.5 31.0 41.0 52-53 36.847666795493154 39.0 35.0 40.0 31.0 41.0 54-55 36.70824837031978 39.0 35.0 40.0 30.0 41.0 56-57 36.53541635324298 38.0 35.0 40.0 30.0 41.0 58-59 36.378011866547595 38.0 35.0 40.0 30.0 41.0 60-61 36.170002681692395 38.0 34.0 40.0 29.5 41.0 62-63 35.901355122304864 37.5 34.0 40.0 29.0 41.0 64-65 35.68187307643769 37.0 34.0 40.0 29.0 41.0 66-67 35.39957843967217 36.5 34.0 39.0 29.0 41.0 68-69 35.06583647585105 36.0 33.5 39.0 28.5 40.5 70-71 34.70453905064295 36.0 33.0 39.0 28.0 40.0 72-73 34.41335190176147 35.0 33.0 38.0 28.0 40.0 74-75 34.03620802347773 35.0 32.5 37.0 28.0 39.5 76-77 32.949283809471865 34.0 31.0 36.0 26.0 39.0 78-79 33.258554375838344 35.0 32.0 36.0 27.0 39.0 80-81 33.10925308224836 35.0 32.0 36.0 27.0 37.5 82-83 32.68585828693377 34.0 31.5 35.0 26.0 37.0 84-85 32.48282122108115 34.0 31.0 35.0 26.0 37.0 86-87 32.408757874199715 34.0 31.0 35.0 26.0 36.0 88-89 32.24854187100989 34.0 31.0 35.0 26.0 36.0 90-91 32.141602648880564 34.0 31.0 35.0 26.0 35.5 92-93 32.07676762422318 34.0 31.0 35.0 26.0 35.0 94-95 32.019383712933404 34.0 31.0 35.0 26.0 35.0 96-97 31.90258239577191 34.0 31.0 35.0 26.0 35.0 98-99 32.105715239985294 34.0 31.0 35.0 26.5 35.0 100-101 31.17202231961396 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 4.0 19 21.0 20 98.0 21 536.0 22 2640.0 23 8101.0 24 21499.0 25 44598.0 26 79928.0 27 126123.0 28 180553.0 29 242532.0 30 312291.0 31 388157.0 32 485221.0 33 613056.0 34 794940.0 35 1051673.0 36 1472054.0 37 1991754.0 38 1824378.0 39 781090.0 40 28814.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.433331645943184 21.270943534024628 14.206584209109552 25.089140610922634 2 15.125197453419078 22.28439167983182 39.00104431291569 23.589366553833408 3 17.854234124419776 26.163220705261093 30.93516505504897 25.047380115270162 4 12.895338525710324 18.083096723914487 37.62504589685249 31.396518853522704 5 13.10928938897306 37.812336633760005 35.7566265389979 13.321747438269032 6 31.21474961442816 37.57106536104136 17.83505037242359 13.379134652106883 7 26.74671913461192 32.39601522019532 23.09042538786608 17.766840257326677 8 25.040423201276397 36.51087079570716 20.90647683176647 17.542229171249975 9 25.765270506024702 15.785340241489454 20.880438711230738 37.568950541255106 10-11 24.66578909619971 26.395410247765973 28.839022310200424 20.099778345833897 12-13 25.016447269265267 24.026118311439845 29.01373417557387 21.94370024372102 14-15 22.255899318501715 25.447430316927278 26.225722275549916 26.07094808902109 16-17 22.09590805742956 28.471869315294395 27.08613548943391 22.346087137842133 18-19 22.193848781619103 27.728114687265116 28.556289006602782 21.521747524513003 20-21 22.780644229313975 26.999884061710176 28.371558916388974 21.84791279258688 22-23 22.61466218019226 26.91686520553798 28.259448031947944 22.209024582321817 24-25 22.39537591202633 27.034868066162154 28.335113972984665 22.234642048826846 26-27 22.39024964694063 27.125528990425718 28.27324910736046 22.21097225527319 28-29 22.302533915156538 27.23138349343949 28.286779379140164 22.179303212263807 30-31 22.492363423998103 27.118097419459946 28.156062317243435 22.233476839298515 32-33 22.349340562145606 27.306049233110034 28.07627029794012 22.26833990680424 34-35 22.440846377569613 27.266059672206744 28.1254327983591 22.167661151864543 36-37 22.4051301321512 27.240649076916107 28.100819940795006 22.253400850137687 38-39 22.298657456995485 27.27591843832407 28.197016476184356 22.22840762849609 40-41 22.41292637719191 27.034897622049296 28.14198148067643 22.41019452008236 42-43 22.445311326828605 27.23849430225314 27.88734190967656 22.428852461241693 44-45 22.363571270421033 27.243750603881377 27.783177583680924 22.609500542016665 46-47 22.478106323428342 27.20381819459471 27.590706977264656 22.72736850471229 48-49 22.37519870475015 27.487237464440877 27.5633003425342 22.574263488274777 50-51 22.319888970535054 27.553499493176485 27.512990300645402 22.61362123564306 52-53 22.403841627540054 27.36011873121354 27.2144392134586 23.0216004277878 54-55 22.319723047251852 27.013407346811412 27.461318764667965 23.205550841268774 56-57 22.29629513981046 26.674778824739683 27.883429839125856 23.145496196323997 58-59 22.114640553918097 26.41703346992002 28.022993473178566 23.445332502983316 60-61 22.13395741596588 26.150767342242748 28.464549637695345 23.25072560409603 62-63 21.841330178741806 26.865276266403054 28.380866539267334 22.912527015587806 64-65 21.34036671736886 27.232744189485864 28.130005731918956 23.296883361226325 66-67 21.423160381239224 27.980622366416036 27.437808965453105 23.15840828689164 68-69 21.559076355381745 28.411751391599154 26.820271019237662 23.20890123378144 70-71 21.506028671606835 27.90218435089721 26.82519863699297 23.766588340502988 72-73 21.428721750146227 27.348321542047422 26.71133932744112 24.51161738036523 74-75 22.00765977108697 26.85918294818438 26.828319533085914 24.304837747642733 76-77 22.654296184339927 26.61978292567469 26.668136880028335 24.057784009957047 78-79 22.923103239477385 26.43970471663792 25.733383493409672 24.903808550475024 80-81 22.736606046402684 27.048795412897732 25.627618884014275 24.586979656685312 82-83 22.540442470589213 27.254325060607044 25.678454881967717 24.52677758683603 84-85 22.605276164850803 27.28693606429448 25.691767818755274 24.41601995209944 86-87 23.117921980618515 27.700280863328285 25.614292442268944 23.567504713784256 88-89 23.322465064388876 27.204081300322542 26.09146537076536 23.38198826452322 90-91 22.850810983518528 27.191949773704387 26.568913717715663 23.388325525061422 92-93 22.527814606086906 26.481828379010526 26.422499618616325 24.567857396286243 94-95 22.299393455363056 26.407114564299167 27.442471146718212 23.85102083361956 96-97 21.640746804807623 26.835908652133433 27.812173515897804 23.71117102716114 98-99 21.77663876152564 26.811156892997534 28.359308011892914 23.052896333583913 100-101 24.998703064590114 34.858028803797794 29.973690413781558 10.169577717830542 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2379.0 1 2169.0 2 2935.5 3 4188.0 4 5598.5 5 8546.5 6 11049.5 7 13182.0 8 14687.0 9 14703.0 10 13830.5 11 12836.0 12 13898.5 13 18036.0 14 27951.0 15 41414.0 16 51156.5 17 55055.5 18 55514.0 19 53839.5 20 50470.0 21 47698.5 22 47285.0 23 50700.5 24 59118.5 25 71840.0 26 88144.0 27 105745.0 28 125057.5 29 146299.0 30 165967.0 31 185648.5 32 205792.0 33 225380.0 34 245028.0 35 264047.0 36 285613.5 37 307031.5 38 326226.0 39 343960.5 40 361802.5 41 380055.0 42 395148.5 43 410624.5 44 426671.5 45 440160.0 46 450908.0 47 459025.5 48 464047.5 49 464894.0 50 462759.5 51 456374.0 52 444094.0 53 428659.0 54 409069.5 55 383750.5 56 352834.5 57 318591.5 58 284237.0 59 247709.5 60 209736.0 61 173220.0 62 139720.0 63 110192.5 64 83883.5 65 63565.5 66 48642.5 67 37249.0 68 28723.0 69 21141.5 70 15132.5 71 11100.5 72 7909.0 73 5559.5 74 3969.5 75 2753.0 76 1934.0 77 1328.5 78 901.5 79 617.5 80 435.0 81 323.0 82 246.0 83 180.5 84 131.0 85 99.0 86 79.0 87 61.0 88 44.0 89 26.5 90 13.5 91 7.5 92 8.0 93 5.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012440116389728943 3 3.8277281199165976E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.001421044064519037 18-19 0.0014306133848188283 20-21 2.3924527875759353E-5 22-23 0.0023305361635326217 24-25 1.531799316099474E-4 26-27 0.0012499215805904897 28-29 5.366577749181586E-4 30-31 1.5835777801579432E-4 32-33 9.24227853358543E-4 34-35 0.01607623685127005 36-37 0.034293813156677615 38-39 0.007717115674016663 40-41 0.004628628626255133 42-43 0.007560126207698973 44-45 0.005396149289694622 46-47 0.0031043015134927417 48-49 0.0013468693007355045 50-51 1.6771794370253713E-4 52-53 1.375181444613298E-4 54-55 0.004594540297695475 56-57 0.011777067023936225 58-59 0.009289493662474387 60-61 0.007813258313218606 62-63 0.0018169613723775008 64-65 0.001353458416365623 66-67 0.0012966544080660846 68-69 0.0 70-71 0.0 72-73 5.996031332673222E-4 74-75 8.011748332091513E-4 76-77 7.302378914234837E-5 78-79 8.428805044590239E-4 80-81 0.0025027653661261326 82-83 0.0046230540939884305 84-85 0.012422479519020533 86-87 0.008001967195022509 88-89 0.07572252914483181 90-91 0.0 92-93 0.0 94-95 1.717365409139535E-4 96-97 0.009765822735520648 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 342.0 20-21 1030.0 22-23 2168.0 24-25 4520.0 26-27 5466.0 28-29 10524.0 30-31 29614.0 32-33 41653.0 34-35 59522.0 36-37 85542.0 38-39 64664.0 40-41 99397.0 42-43 109063.0 44-45 127453.0 46-47 126781.0 48-49 114299.0 50-51 110136.0 52-53 18209.0 54-55 18385.0 56-57 18701.0 58-59 20415.0 60-61 131425.0 62-63 129548.0 64-65 138137.0 66-67 147419.0 68-69 148120.0 70-71 146703.0 72-73 141825.0 74-75 146508.0 76-77 146255.0 78-79 155248.0 80-81 157813.0 82-83 152133.0 84-85 152822.0 86-87 162833.0 88-89 174789.0 90-91 189026.0 92-93 205510.0 94-95 263529.0 96-97 319926.0 98-99 993803.0 100-101 5178807.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.73457631423945 #Duplication Level Percentage of deduplicated Percentage of total 1 89.75115942450941 76.05026467547565 2 7.012855967752615 11.88462758360607 3 1.7642816779018664 4.484869814279705 4 0.6621831593523902 2.244392378005972 5 0.30931720049585004 1.3104930965361257 6 0.16363994178783095 0.8319576681287199 7 0.09552958048391796 0.5666260969447279 8 0.06070385565309064 0.41149723915243086 9 0.04675000227369731 0.35652074718163257 >10 0.13140471912865692 1.710100451272382 >50 0.0019037642382759323 0.10573264211345028 >100 2.707064224612995E-4 0.04291760730304287 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.569320299791494E-6 2 0.0 1.9138640599582988E-5 0.0 9.569320299791494E-6 9.569320299791494E-6 3 0.0 1.9138640599582988E-5 0.0 9.569320299791494E-6 9.569320299791494E-6 4 0.0 7.655456239833195E-5 0.0 9.569320299791494E-6 9.569320299791494E-6 5 0.0 7.655456239833195E-5 0.0 1.9138640599582988E-5 9.569320299791494E-6 6 0.0 7.655456239833195E-5 0.0 1.9138640599582988E-5 9.569320299791494E-6 7 0.0 9.569320299791494E-5 0.0 2.8707960899374482E-5 9.569320299791494E-6 8 0.0 1.0526252329770643E-4 0.0 2.8707960899374482E-5 9.569320299791494E-6 9 0.0 2.4880232779457887E-4 0.0 3.8277281199165976E-5 1.9138640599582988E-5 10-11 0.0 2.4880232779457887E-4 0.0 4.784660149895747E-5 1.9138640599582988E-5 12-13 0.0 2.631563082442661E-4 0.0 6.22005819486447E-5 1.9138640599582988E-5 14-15 0.0 3.2057223004301505E-4 0.0 7.176990224843621E-5 3.349262104927023E-5 16-17 0.0 3.3971087064259807E-4 0.0 8.612388269812345E-5 4.784660149895747E-5 18-19 0.0 3.9234213229145124E-4 0.0 1.2918582404718517E-4 5.7415921798748963E-5 20-21 0.0 4.4018873379040875E-4 0.0 3.492801909423895E-4 5.7415921798748963E-5 22-23 0.0 5.645898976876982E-4 0.0 8.660234871311302E-4 1.0047786314781069E-4 24-25 0.0 6.554984405357173E-4 0.0 0.002133958426853503 1.2440116389728943E-4 26-27 0.0 6.985603818847791E-4 0.0 0.00546886655133084 1.2440116389728943E-4 28-29 0.0 7.081297021845705E-4 0.0 0.028540497794128133 1.2440116389728943E-4 30-31 0.0 7.990382450325898E-4 0.0 0.047650430432811745 1.2440116389728943E-4 32-33 0.0 8.038229051824855E-4 0.0 0.0690904925644946 1.4353980449687242E-4 34-35 0.0 9.521473698292538E-4 0.0 0.0987697394742979 1.531091247966639E-4 36-37 0.0 0.0011100411547758132 0.0 0.1412096750038732 1.531091247966639E-4 38-39 0.0 0.0011387491156751878 0.0 0.22199866163486287 1.5789378494655967E-4 40-41 0.0 0.0012057343577737282 0.0 0.6065083052609348 1.6746310524635115E-4 42-43 0.0 0.0012487962991227898 0.0 0.6746227271548506 1.722477653962469E-4 44-45 0.0 0.0013971207637695582 0.0 0.7887416563900141 1.818170856960384E-4 46-47 0.0 0.0015119526073670562 0.0 0.9321044284613405 1.9617106614572565E-4 48-49 0.0 0.0015263065878167435 0.0 1.0535438877258443 2.1052504659541287E-4 50-51 0.0 0.0016554924118639285 0.0 1.1985765061894842 2.1052504659541287E-4 52-53 0.0 0.00166506173216372 0.0 1.5129382473579347 2.2966368719499585E-4 54-55 0.0 0.0016794157126134072 0.0 2.5217216393815045 2.535869879444746E-4 56-57 0.0 0.0017129083336626775 0.0 3.628389608751641 2.5837164809437035E-4 58-59 0.0 0.0017272623141123646 0.0 4.7542871272642095 2.6794096839416183E-4 60-61 0.0 0.0017655395953115305 0.0 5.5952007179286865 2.8707960899374484E-4 62-63 0.0 0.001799032216360801 0.0 5.6202627677938395 2.966489292935363E-4 64-65 0.0 0.0019521413411574648 0.0 5.634865550571321 2.966489292935363E-4 66-67 0.0 0.001976064641906944 0.0 5.647004233371607 2.966489292935363E-4 68-69 0.0 0.002004772602806318 0.0 5.656889341241293 2.966489292935363E-4 70-71 0.0 0.0020286959035557967 0.0 5.666836649692925 3.062182495933278E-4 72-73 0.0 0.0020286959035557967 0.0 5.67489401738535 3.253568901929108E-4 74-75 0.0 0.0020478345441553797 0.0 5.682932246437175 3.253568901929108E-4 76-77 0.0 0.0021387430870033987 0.0 5.6905350714153595 3.3971087064259807E-4 78-79 0.0 0.0021722357080526692 0.0 5.697381920089859 3.5406485109228526E-4 80-81 0.0 0.0021818050283524608 0.0 5.701649836943567 3.5406485109228526E-4 82-83 0.0 0.0021913743486522523 0.0 5.704802927982348 3.5406485109228526E-4 84-85 0.0 0.0022057283291019394 0.0 5.708046927563977 3.5406485109228526E-4 86-87 0.0 0.0022200823095516265 0.0 5.708501470278218 3.5406485109228526E-4 88-89 0.0 0.002263144250900688 0.0 5.708635440762414 3.5406485109228526E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCTCG 16865 0.0 45.388393 94-95 GGTATCA 11855 0.0 44.12085 1 CCGTCTT 7095 0.0 33.632866 92-93 TATGCCG 6810 0.0 32.4597 88-89 GTATCAA 19810 0.0 31.921541 1 TGCCGTC 7360 0.0 31.065655 90-91 GCCGTCT 7195 0.0 30.471485 90-91 ATCTCGT 13495 0.0 29.39839 94-95 ATGCCGT 7240 0.0 29.196634 88-89 CGCTATC 23885 0.0 28.439367 92-93 CGTATGC 8160 0.0 27.440577 86-87 TCGTATG 8220 0.0 25.535736 84-85 TCAACGC 24030 0.0 25.440083 4 CTCGTAT 8730 0.0 25.228731 84-85 ATCAACG 24390 0.0 25.132235 3 CAACGCA 24695 0.0 24.704908 5 TATCAAC 25745 0.0 24.178118 2 AACGCAG 25360 0.0 23.975758 6 GCTATCT 26675 0.0 23.621891 92-93 TCTCGTA 8950 0.0 23.00587 82-83 >>END_MODULE