##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139923_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14360367 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.817887244803703 31.0 31.0 34.0 30.0 34.0 2 31.99258020355608 31.0 31.0 34.0 30.0 34.0 3 32.02279210552209 31.0 31.0 34.0 30.0 34.0 4 35.749423534927764 37.0 35.0 37.0 35.0 37.0 5 35.56695654087392 37.0 35.0 37.0 33.0 37.0 6 35.57345588730427 37.0 35.0 37.0 33.0 37.0 7 35.45978483697527 37.0 35.0 37.0 33.0 37.0 8 35.42817937730979 37.0 35.0 37.0 33.0 37.0 9 37.00747856931512 39.0 37.0 39.0 33.0 39.0 10-11 36.84662105084083 39.0 37.0 39.0 32.5 39.0 12-13 36.80719966975774 39.0 37.0 39.0 32.5 39.0 14-15 37.94457074112381 40.0 37.0 41.0 33.0 41.0 16-17 37.95438835233111 40.0 37.0 41.0 33.0 41.0 18-19 37.924779916836385 40.0 37.0 41.0 33.0 41.0 20-21 37.885861795235506 40.0 37.0 41.0 32.5 41.0 22-23 37.80511075317656 40.0 37.0 41.0 32.0 41.0 24-25 37.70929567868709 39.0 37.0 41.0 32.0 41.0 26-27 37.54779952153234 39.0 36.5 41.0 32.0 41.0 28-29 37.406442048358926 39.0 36.0 40.5 32.0 41.0 30-31 37.27296187452019 39.0 36.0 40.0 31.0 41.0 32-33 37.45659323054403 39.0 36.0 40.5 32.0 41.0 34-35 37.43083578176412 39.0 36.0 41.0 32.0 41.0 36-37 37.32299522825052 39.0 36.0 40.5 31.0 41.0 38-39 37.16074700618062 39.0 36.0 40.0 31.0 41.0 40-41 37.133145963083024 39.0 36.0 40.0 31.0 41.0 42-43 37.00719894992304 39.0 35.5 40.0 31.0 41.0 44-45 37.05336093421026 39.0 35.5 40.0 31.0 41.0 46-47 37.19735341964393 39.0 36.0 40.5 31.0 41.0 48-49 37.127093369544276 39.0 36.0 41.0 31.0 41.0 50-51 37.002045713907904 39.0 35.0 40.0 31.0 41.0 52-53 36.84784467399537 39.0 35.0 40.0 30.5 41.0 54-55 36.699917783614865 39.0 35.0 40.0 30.0 41.0 56-57 36.523306062839744 38.0 35.0 40.0 30.0 41.0 58-59 36.358310514805 38.0 35.0 40.0 30.0 41.0 60-61 36.14514172673755 38.0 34.0 40.0 29.0 41.0 62-63 35.87567328403656 37.5 34.0 40.0 29.0 41.0 64-65 35.633148025520136 37.0 34.0 40.0 29.0 41.0 66-67 35.34656561382702 36.5 34.0 39.0 29.0 41.0 68-69 35.0139667801339 36.0 33.5 39.0 28.0 40.5 70-71 34.659010160687885 36.0 33.0 39.0 28.0 40.0 72-73 34.36484862147843 35.0 33.0 38.0 28.0 40.0 74-75 34.003569302113235 35.0 32.0 37.5 27.5 39.5 76-77 32.9330102198893 34.0 31.0 36.0 26.0 39.0 78-79 33.29102953300527 35.0 32.0 36.0 27.0 39.0 80-81 33.176987640159155 35.0 32.0 36.0 27.0 38.5 82-83 32.750065579343 34.0 31.5 35.5 26.0 37.0 84-85 32.51135449301157 34.0 31.0 35.0 26.0 37.0 86-87 32.42646648681831 34.0 31.0 35.0 26.0 36.0 88-89 32.2719461730825 34.0 31.0 35.0 26.0 36.0 90-91 32.143416131583066 34.0 31.0 35.0 26.0 36.0 92-93 32.06120388154674 34.0 31.0 35.0 26.0 35.0 94-95 32.01034353840387 34.0 31.0 35.0 26.0 35.0 96-97 31.92054224692526 34.0 31.0 35.0 26.0 35.0 98-99 32.130018439696144 34.0 31.0 35.0 26.5 35.0 100-101 31.233415645082722 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 4.0 19 19.0 20 136.0 21 800.0 22 3500.0 23 11364.0 24 29260.0 25 61022.0 26 109150.0 27 172267.0 28 245737.0 29 329477.0 30 422363.0 31 527120.0 32 658111.0 33 831094.0 34 1082227.0 35 1425666.0 36 1978974.0 37 2669483.0 38 2505186.0 39 1256578.0 40 40829.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.0456873421132 21.661974237845037 14.250471453828442 25.041866966213327 2 15.026234678912001 22.627623824780603 39.11470954669057 23.231431949616827 3 17.78076671449507 26.4710959644828 31.036251515891134 24.711885805130997 4 12.799172388781734 18.298579576592964 38.049183426104875 30.853064608520427 5 12.974745004775992 37.95368878803724 35.9807238909702 13.09084231621657 6 30.783106030646714 37.978945802708246 18.05659284334446 13.181355323300581 7 26.407995004584496 32.48667669844371 23.471572836543803 17.633755460427995 8 24.712251434799683 36.710440617569176 21.20904013107743 17.368267816553715 9 25.646635632640862 15.910164412929001 21.070645339356577 37.372554615073554 10-11 24.416593949165787 26.589696488954633 29.09239366932614 19.90131589255344 12-13 24.783092242698253 24.201105027469005 29.237887861779576 21.777914868053163 14-15 22.00682614866319 25.687734860815187 26.448171554389937 25.857267436131682 16-17 21.912652159806978 28.635026697842758 27.313156708889302 22.139164433460962 18-19 21.973505591371463 27.995735702703072 28.700856578080387 21.329902127845077 20-21 22.59019017831171 27.276094667905415 28.49865062669795 21.63506452708493 22-23 22.367859641282966 27.19090751303211 28.36077127589184 22.080461569793083 24-25 22.184657814552867 27.272471724401033 28.4518509998599 22.091019461186203 26-27 22.137136699526057 27.428678084659573 28.371153688062634 22.063031527751733 28-29 22.078717984594665 27.516215441520703 28.378867969736316 22.026198604148323 30-31 22.329741285314704 27.397447880512647 28.25303606875839 22.019774765414247 32-33 22.156840943645502 27.52698606668344 28.189791230403223 22.12638175926784 34-35 22.24729288733635 27.55317915138272 28.24212830294671 21.957399658334214 36-37 22.239809397832403 27.49683664767592 28.199540365793403 22.063813588698274 38-39 22.097006915954243 27.561490995625082 28.28280526907433 22.058696819346345 40-41 22.28320936355359 27.43222857984744 28.14471793407012 22.139844122528856 42-43 22.180412034165517 27.577443697775717 27.951165774972438 22.29097849308633 44-45 22.248026931854554 27.577899360573166 27.839484745668518 22.334588961903766 46-47 22.289025801374063 27.574846822271116 27.681760280681463 22.454367095673362 48-49 22.19975236932763 27.725858118248546 27.65517706246614 22.419212449957683 50-51 22.24176383865023 27.788752081322 27.55064861341556 22.418835466612204 52-53 22.344089446960027 27.660383586802652 27.4472676855105 22.54825928072682 54-55 22.264233681917002 27.53387514001246 27.5215342901553 22.680356887915238 56-57 22.241027452208737 27.604711686286045 27.559029919679357 22.595230941825864 58-59 22.275971936985343 27.60910822089079 27.50929523149297 22.605624610630898 60-61 22.319393649853073 27.548965104494282 27.557437930791934 22.574203314860707 62-63 22.276121548171915 27.703389457851458 27.471368602216717 22.54912039175991 64-65 22.234225985506733 27.710689660182332 27.396529454827757 22.65855489948318 66-67 22.28835348070886 27.821690105097524 27.199478186807706 22.690478227385906 68-69 22.282914970050744 27.800582012574772 27.181235081877553 22.735267935496932 70-71 22.206412907068163 27.60551080879454 27.325635332822294 22.862440951315 72-73 22.308399664723677 27.578082260531232 27.18737205861535 22.92614601612974 74-75 22.24619291513867 27.658070657876543 27.171784515054803 22.923951911929986 76-77 22.520737007615484 27.602904289681714 27.077146904768977 22.799211797933825 78-79 22.458761666793432 27.569104753542256 27.016332151758625 22.955801427905687 80-81 22.473383990257048 27.577811697534244 27.010807541845512 22.937996770363196 82-83 22.376883523387082 27.61637273367446 27.10139371858619 22.905350024352266 84-85 22.54170581230869 27.610176373059563 27.108683138380258 22.739434676251484 86-87 22.425956437629427 27.573603159242328 27.181209214869227 22.81923118825902 88-89 22.39354531798477 27.576031342086633 27.211300616727673 22.819122723200923 90-91 22.484341595935447 27.534796958985368 27.30055163486163 22.680309810217555 92-93 22.497859404044913 27.47542786648769 27.354260879105478 22.67245185036192 94-95 22.446471726904978 27.448611647771965 27.467208928762542 22.637707696560515 96-97 22.21040237837013 27.44333747624968 27.653281814345554 22.692978331034634 98-99 22.267066490269784 28.07161657455345 27.814389345642272 21.846927589534495 100-101 25.172789335482083 35.83866550997505 28.97807954148161 10.010465613061255 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2703.0 1 2510.5 2 3456.5 3 4925.0 4 6690.5 5 10465.0 6 13686.5 7 16208.0 8 17760.5 9 17571.5 10 16568.0 11 15513.5 12 17108.0 13 22513.5 14 34605.5 15 51169.0 16 63937.5 17 69855.0 18 71130.5 19 70184.5 20 68291.5 21 67028.5 22 68584.0 23 76139.5 24 90755.0 25 111675.0 26 137987.0 27 166307.0 28 197623.5 29 230829.0 30 262582.0 31 294431.5 32 326217.5 33 356969.5 34 386365.0 35 415537.0 36 448323.5 37 479120.0 38 505114.0 39 527790.5 40 549336.5 41 572249.5 42 590500.0 43 605676.0 44 620234.0 45 632241.0 46 639580.5 47 642575.5 48 642357.0 49 636791.0 50 626458.5 51 612145.0 52 590802.0 53 563859.0 54 533271.5 55 497135.0 56 458689.5 57 418213.5 58 373682.5 59 327141.0 60 279781.5 61 232227.5 62 187835.5 63 148371.5 64 113325.0 65 86086.0 66 65567.0 67 50168.0 68 38537.5 69 28383.5 70 20683.5 71 15218.0 72 11066.5 73 7934.0 74 5652.5 75 3993.0 76 2753.5 77 1881.0 78 1296.5 79 900.0 80 636.0 81 429.5 82 299.0 83 214.0 84 163.5 85 125.5 86 99.0 87 82.5 88 60.5 89 42.5 90 27.5 91 15.0 92 12.0 93 9.5 94 7.0 95 4.5 96 3.0 97 2.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012255954182786553 3 1.3927220662257447E-5 4 6.963610331128724E-6 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0015180670521860618 18-19 0.0014275401178813884 20-21 1.7409917517730174E-5 22-23 0.002535176267184177 24-25 1.2539902142783644E-4 26-27 0.0012684665114560821 28-29 5.543739758027962E-4 30-31 1.466600734815855E-4 32-33 0.0010579156259742806 34-35 0.016308035923710346 36-37 0.03374166906214919 38-39 0.007506942043760858 40-41 0.00449192354673906 42-43 0.007544025795823551 44-45 0.00532069884127742 46-47 0.003039159438201447 48-49 0.0013526564615069308 50-51 1.501159299137207E-4 52-53 8.961644977732455E-5 54-55 0.004537914890006621 56-57 0.011956373975723647 58-59 0.00990415572297967 60-61 0.008065184117013407 62-63 0.0018982519435909611 64-65 0.0012537786495304493 66-67 0.0014387390925054099 68-69 0.0 70-71 4.46450674723137E-6 72-73 6.137057402807308E-4 74-75 8.564562636026086E-4 76-77 6.604513788903889E-5 78-79 8.947963407447967E-4 80-81 0.002746147545545889 82-83 0.005014262288581586 84-85 0.013278954221343658 86-87 0.008613333513673365 88-89 0.07857506053034702 90-91 0.0 92-93 0.0 94-95 1.7034751421564692E-4 96-97 0.008904522090921803 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 471.0 20-21 1388.0 22-23 2712.0 24-25 6012.0 26-27 7169.0 28-29 14430.0 30-31 41456.0 32-33 59888.0 34-35 85504.0 36-37 125772.0 38-39 133597.0 40-41 144380.0 42-43 159725.0 44-45 187049.0 46-47 187018.0 48-49 172348.0 50-51 162636.0 52-53 146192.0 54-55 163404.0 56-57 171154.0 58-59 179561.0 60-61 180985.0 62-63 176216.0 64-65 192882.0 66-67 204024.0 68-69 204132.0 70-71 202304.0 72-73 197645.0 74-75 201878.0 76-77 201920.0 78-79 214156.0 80-81 217582.0 82-83 210523.0 84-85 211440.0 86-87 224128.0 88-89 238934.0 90-91 257885.0 92-93 279976.0 94-95 352935.0 96-97 428762.0 98-99 1162200.0 100-101 6647994.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.65489409559018 #Duplication Level Percentage of deduplicated Percentage of total 1 91.070677233753 78.91719890904541 2 6.286206316478091 10.89461085234878 3 1.4961953071478054 3.8895793766163624 4 0.532203842232173 1.8447227034358051 5 0.23503464817631858 1.018345127325659 6 0.11878874551792602 0.6176175697562336 7 0.06895085235852708 0.4182450166250186 8 0.045136313437711885 0.31290259686482297 9 0.030731730103527977 0.23967493357459294 >10 0.11199781539477781 1.532177382225131 >50 0.003110635426469113 0.17973310449332494 >100 9.399009388638492E-4 0.1190336865851011 >500 2.665903481069601E-5 0.016158741103790782 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.089083099338617E-5 2 0.0 2.7854441324514894E-5 0.0 0.0 2.089083099338617E-5 3 0.0 2.7854441324514894E-5 0.0 0.0 2.089083099338617E-5 4 0.0 5.570888264902979E-5 0.0 1.3927220662257447E-5 2.7854441324514894E-5 5 0.0 5.570888264902979E-5 0.0 2.089083099338617E-5 2.7854441324514894E-5 6 2.7854441324514894E-5 5.570888264902979E-5 0.0 2.7854441324514894E-5 3.481805165564362E-5 7 2.7854441324514894E-5 6.267249298015851E-5 0.0 2.7854441324514894E-5 4.178166198677234E-5 8 2.7854441324514894E-5 6.267249298015851E-5 0.0 2.7854441324514894E-5 4.8745272317901066E-5 9 2.7854441324514894E-5 1.2534498596031702E-4 0.0 6.963610331128724E-5 5.570888264902979E-5 10-11 2.7854441324514894E-5 1.2534498596031702E-4 0.0 9.400873947023778E-5 5.570888264902979E-5 12-13 2.7854441324514894E-5 1.357904014570101E-4 0.0 1.183813756291883E-4 6.267249298015851E-5 14-15 3.481805165564362E-5 1.8453567377491118E-4 0.0 1.3230859629144575E-4 9.749054463580213E-5 16-17 8.356332397354469E-5 1.9149928410603989E-4 0.0 1.6364484278152502E-4 1.0793596013249521E-4 18-19 8.356332397354469E-5 2.1587192026499043E-4 0.0 2.2631733576168353E-4 1.3230859629144575E-4 20-21 8.704512913910905E-5 2.2979914092724789E-4 0.0 3.8996217854320853E-4 1.3230859629144575E-4 22-23 9.052693430467342E-5 2.8898982874184205E-4 0.0 8.913421223844766E-4 1.566812324503963E-4 24-25 9.052693430467342E-5 3.307714907286144E-4 0.0 0.002026410606358459 1.8801747894047553E-4 26-27 9.052693430467342E-5 3.481805165564362E-4 0.0 0.005543033823578464 1.8801747894047553E-4 28-29 9.052693430467342E-5 3.481805165564362E-4 0.0 0.02829663058054157 1.9498108927160426E-4 30-31 9.052693430467342E-5 4.0040759403990166E-4 0.0 0.04664922560823132 1.9846289443716864E-4 32-33 9.052693430467342E-5 4.03889399205466E-4 0.0 0.06646069700029254 2.1587192026499045E-4 34-35 9.749054463580213E-5 4.700436973511889E-4 0.0 0.09626843102268903 2.193537254305548E-4 36-37 9.749054463580213E-5 5.431616058280404E-4 0.0 0.137325877535024 2.2979914092724789E-4 38-39 9.749054463580213E-5 5.67534241986991E-4 0.0 0.1991000647824669 2.576535822517628E-4 40-41 9.749054463580213E-5 6.336885401327139E-4 0.0 0.29575497617853364 2.715808029140202E-4 42-43 1.009723498013665E-4 6.510975659605357E-4 0.0 0.3468504669831906 2.7854441324514896E-4 44-45 1.0445415496693086E-4 7.520699157619022E-4 0.0 0.42411172360706384 2.8550802357627767E-4 46-47 1.0445415496693086E-4 8.321514345698825E-4 0.0 0.5039286252224613 2.994352442385351E-4 48-49 1.0445415496693086E-4 8.530422655632687E-4 0.0 0.5730180851227549 3.0639885456966383E-4 50-51 1.2534498596031702E-4 9.261601740401203E-4 0.0 0.6420587997507305 3.098806597352282E-4 52-53 1.3230859629144575E-4 9.33123784371249E-4 0.0 0.7197169821634781 3.3425329589417875E-4 54-55 1.3230859629144575E-4 9.470510050335065E-4 0.0 0.8868262210847397 3.586259320531293E-4 56-57 1.3230859629144575E-4 9.609782256957639E-4 0.0 1.0383160820332795 3.6907134754982237E-4 58-59 1.3230859629144575E-4 9.888326670202789E-4 0.0 1.1621186283052514 3.7951676304651545E-4 60-61 1.357904014570101E-4 9.992780825169717E-4 0.0 1.231497078034287 3.829985682120798E-4 62-63 1.462358169537032E-4 0.0010132053031792292 0.0 1.2698108620761572 3.8996217854320853E-4 64-65 1.462358169537032E-4 0.0010863232116560808 0.0 1.29721963233948 3.8996217854320853E-4 66-67 1.462358169537032E-4 0.0010863232116560808 0.0 1.310669845694055 3.8996217854320853E-4 68-69 1.462358169537032E-4 0.0011141776529805959 0.0 1.322354783829689 3.934439837087729E-4 70-71 1.462358169537032E-4 0.0011385502891395464 0.0 1.3334199606458526 4.1781661986772345E-4 72-73 1.6712664794708937E-4 0.001152477509801804 0.0 1.3422811547922138 4.665618921856245E-4 74-75 1.6712664794708937E-4 0.001183813756291883 0.0 1.351351257248509 4.665618921856245E-4 76-77 1.6712664794708937E-4 0.001232559028609784 0.0 1.359279327610499 4.665618921856245E-4 78-79 1.740902582782181E-4 0.0012813043009276852 0.0 1.3668801082869262 4.665618921856245E-4 80-81 1.740902582782181E-4 0.0012813043009276852 0.0 1.3713194098730206 4.665618921856245E-4 82-83 1.810538686093468E-4 0.0012917497164243782 0.0 1.3743799166135517 4.8048911284788193E-4 84-85 1.8801747894047553E-4 0.0013161223525833287 0.0 1.3773951598869303 4.839709180134463E-4 86-87 1.9498108927160426E-4 0.0013300495732455862 0.0 1.377799049286136 4.874527231790107E-4 88-89 2.2283553059611916E-4 0.0013718312352323586 0.0 1.377861721779116 4.874527231790107E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14225 0.0 42.565315 1 GTATCAA 23635 0.0 31.662275 1 TCAACGC 28975 0.0 25.203756 4 ATCAACG 29545 0.0 24.717512 3 CAACGCA 29605 0.0 24.66742 5 TATCAAC 31270 0.0 23.68769 2 AACGCAG 30855 0.0 23.60307 6 GTACATG 35980 0.0 20.341482 1 TACATGG 35845 0.0 20.093464 2 ACGCAGA 36760 0.0 19.789722 7 CGCAGAG 37450 0.0 19.435818 8 ACATGGG 37180 0.0 19.06973 3 CATGGGG 27940 0.0 17.290894 4 AGAGTAC 39800 0.0 16.24192 10-11 TATACCG 1015 0.0 15.812892 5 GCAGAGT 45580 0.0 15.757819 9 GAGTACT 25215 0.0 15.492234 12-13 GTGGTAT 7705 0.0 15.102341 1 ATGGGGG 17480 0.0 14.989569 5 CAGAGTA 43720 0.0 14.904961 10-11 >>END_MODULE