##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139921_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14621190 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.823577355878694 31.0 31.0 34.0 30.0 34.0 2 32.00335047968052 31.0 31.0 34.0 30.0 34.0 3 32.03367010482731 33.0 31.0 34.0 30.0 34.0 4 35.75995346480006 37.0 35.0 37.0 35.0 37.0 5 35.58400991984921 37.0 35.0 37.0 33.0 37.0 6 35.59000847400246 37.0 35.0 37.0 33.0 37.0 7 35.47865973973391 37.0 35.0 37.0 33.0 37.0 8 35.448475124117806 37.0 35.0 37.0 33.0 37.0 9 37.027741654407066 39.0 37.0 39.0 33.0 39.0 10-11 36.87169392504988 39.0 37.0 39.0 33.0 39.0 12-13 36.83332355300766 39.0 37.0 39.0 32.5 39.0 14-15 37.976944455273475 40.0 37.0 41.0 33.0 41.0 16-17 37.98744780691585 40.0 37.0 41.0 33.0 41.0 18-19 37.95951075117689 40.0 37.0 41.0 33.0 41.0 20-21 37.92290629829433 40.0 37.0 41.0 33.0 41.0 22-23 37.843119721643106 40.0 37.0 41.0 32.5 41.0 24-25 37.74993269372568 39.5 37.0 41.0 32.0 41.0 26-27 37.592003073740635 39.0 37.0 41.0 32.0 41.0 28-29 37.450021763995714 39.0 36.0 41.0 32.0 41.0 30-31 37.31920877778307 39.0 36.0 40.0 31.5 41.0 32-33 37.496101104609224 39.0 36.0 40.5 32.0 41.0 34-35 37.46828848240831 39.0 36.0 41.0 32.0 41.0 36-37 37.36155547140659 39.0 36.0 40.5 31.5 41.0 38-39 37.19949189341264 39.0 36.0 40.0 31.0 41.0 40-41 37.17551485006871 39.0 36.0 40.0 31.0 41.0 42-43 37.052593249412936 39.0 36.0 40.0 31.0 41.0 44-45 37.104845347796555 39.0 35.5 40.0 31.0 41.0 46-47 37.25746409289523 39.0 36.0 41.0 31.0 41.0 48-49 37.194403454625046 39.0 36.0 41.0 31.0 41.0 50-51 37.07745159985326 39.0 35.5 40.5 31.0 41.0 52-53 36.931727624818876 39.0 35.0 40.0 31.0 41.0 54-55 36.791760539515025 39.0 35.0 40.0 30.5 41.0 56-57 36.62617532358463 38.5 35.0 40.0 30.0 41.0 58-59 36.47217697211812 38.0 35.0 40.0 30.0 41.0 60-61 36.26391165463109 38.0 34.5 40.0 30.0 41.0 62-63 35.99609706718397 38.0 34.0 40.0 29.0 41.0 64-65 35.755011543973595 37.0 34.0 40.0 29.0 41.0 66-67 35.468957008943214 37.0 34.0 39.5 29.0 41.0 68-69 35.13955922771993 36.0 34.0 39.0 28.5 40.5 70-71 34.786862024478324 36.0 33.0 39.0 28.0 40.0 72-73 34.48848018035903 35.0 33.0 38.5 28.0 40.0 74-75 34.12785037535491 35.0 32.5 37.5 28.0 39.5 76-77 33.05965655132759 34.0 31.0 36.0 26.0 39.0 78-79 33.40777143772965 35.0 32.0 36.0 27.0 39.0 80-81 33.28168468166331 35.0 32.0 36.0 27.0 38.5 82-83 32.8417971256124 34.0 31.5 36.0 26.5 37.0 84-85 32.587059363456305 34.0 31.0 35.0 26.0 37.0 86-87 32.48492799774915 34.0 31.0 35.0 26.0 36.5 88-89 32.315137480074206 34.0 31.0 35.0 26.0 36.0 90-91 32.173133077879385 34.0 31.0 35.0 26.0 36.0 92-93 32.07591201812739 34.0 31.0 35.0 26.0 35.0 94-95 32.01495390406261 34.0 31.0 35.0 26.0 35.0 96-97 31.916470331303422 34.0 31.0 35.0 26.0 35.0 98-99 32.1213236412757 34.0 31.0 35.0 26.5 35.0 100-101 31.231243637042063 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 27.0 20 148.0 21 768.0 22 3431.0 23 11103.0 24 28582.0 25 58782.0 26 105161.0 27 167116.0 28 241564.0 29 325825.0 30 420580.0 31 529709.0 32 667885.0 33 846124.0 34 1099579.0 35 1455132.0 36 2025168.0 37 2740166.0 38 2585512.0 39 1268325.0 40 40496.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.77673431505917 21.944574962776628 14.381811603569888 24.896879118594313 2 14.915001733123114 22.689700378989023 39.32266894941004 23.072628938477823 3 17.714156860178313 26.47237190797163 31.25254468053791 24.56092655131215 4 12.588490580348836 18.457390845573503 38.296988021972766 30.657130552104896 5 12.697591646097205 38.156887366896946 36.22662040504227 12.918900581963575 6 30.557122915439848 38.36737639002023 18.057004935986743 13.01849575855317 7 26.210732505356948 32.61987567359429 23.488341236246846 17.681050584801923 8 24.49320472547036 37.13904271813717 21.175109549906676 17.192643006485792 9 25.386634056461887 15.935898514416404 21.22783439651629 37.44963303260542 10-11 24.231847749738563 26.80270894503115 29.26764168990349 19.697801615326796 12-13 24.563544417383262 24.355394465156394 29.417119947145203 21.663941170315137 14-15 21.75805457695304 25.942053964143824 26.578907052025176 25.72098440687796 16-17 21.644039555279424 28.93826846890176 27.48462549234127 21.93306648347755 18-19 21.70915711286793 28.211966467621547 28.917788166355272 21.161088253155246 20-21 22.334099326235172 27.47223881332031 28.776558462688325 21.417103397756193 22-23 22.05838084311482 27.47071471450641 28.640361223809425 21.83054321856935 24-25 21.908837389559274 27.5409206005708 28.755771590798407 21.794470419071523 26-27 21.909889918516374 27.660200979074055 28.64184553105102 21.788063571358553 28-29 21.81580646096043 27.73150993933049 28.72501826154728 21.727665338161795 30-31 22.060531388821346 27.640240260927172 28.511752865692436 21.787475484559046 32-33 21.900838690327777 27.770387336552087 28.502139098256045 21.826634874864084 34-35 21.96185677873509 27.808139120538566 28.572038150206225 21.657965950520115 36-37 21.98996458704032 27.729903928853727 28.478120222993702 21.802011261112252 38-39 21.81434392176229 27.808873179977244 28.57667384043838 21.80010905782208 40-41 22.026144157305254 27.696359744013314 28.443930309121836 21.833565789559596 42-43 21.94063758946151 27.823994567871697 28.265609587580233 21.96975825508656 44-45 22.05583828760765 27.884499155046637 28.085586221651848 21.97407633569387 46-47 22.127010808856365 27.827968396753494 27.890283641129137 22.154737153261003 48-49 22.046966010530202 27.93623785947731 27.878843617056297 22.13795251293619 50-51 22.02296937754079 28.01695579904872 27.834842550377935 22.125232273032555 52-53 22.169345343721737 27.930337277649546 27.782933438200104 22.11738394042861 54-55 22.126443721254805 27.840442138986198 27.791657655653808 22.241456484105193 56-57 22.118913638198283 27.972669928720194 27.780876781926295 22.127539651155228 58-59 22.10036024428299 28.035357180712595 27.755560792155247 22.108721782849166 60-61 22.19756276169387 28.025325754455814 27.7064017694897 22.07070971436062 62-63 22.144219236993205 28.122638280274824 27.658174006550546 22.07496847618142 64-65 22.127105889320465 28.027781918333535 27.684964737536248 22.160147454809753 66-67 22.17694960658782 28.01601324935391 27.582564558926798 22.22447258513147 68-69 22.133940245491484 27.993091335161825 27.662280061761884 22.210688357584804 70-71 22.08880230289244 27.764100670439074 27.779082328965167 22.368014697703327 72-73 22.169946858873264 27.836991718064684 27.687122019017224 22.305939404044825 74-75 22.0270879653794 27.932146859328988 27.672870019591013 22.367895155700598 76-77 22.172928077713294 27.89684914572551 27.60951517478358 22.320707601777613 78-79 22.132537167656025 27.879160202927096 27.60725850701012 22.381044122406767 80-81 22.098249078896945 27.879886534839248 27.67671997845138 22.345144407812427 82-83 22.039521032261995 27.88295301190547 27.69622886632487 22.381297089507665 84-85 22.17254188222575 27.815857041285945 27.70620807676851 22.305392999719793 86-87 22.037123814442513 27.797708351562516 27.776371949933694 22.388795884061278 88-89 22.067165766280148 27.762132597840004 27.78259474598596 22.388106889893884 90-91 22.077489671124777 27.7510447406574 27.866342450125604 22.30512313809222 92-93 22.05289297809449 27.665096515131232 27.913250424015406 22.368760082758868 94-95 21.863006499692446 27.702153646657525 28.031430902846665 22.40340895080336 96-97 21.775723898734135 27.767027518944776 28.070703316735475 22.386545265585617 98-99 21.85377382318935 28.406264781712075 28.202765881460444 21.53719551363813 100-101 24.55548873715067 36.18660084595356 29.468053271127665 9.789857145768103 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3158.0 1 2843.5 2 3764.5 3 5343.0 4 7069.0 5 10671.0 6 13746.5 7 16378.0 8 18292.0 9 18507.0 10 17584.0 11 16380.5 12 17852.5 13 23481.5 14 36732.0 15 54420.0 16 67342.0 17 72970.0 18 74470.0 19 74521.0 20 73664.0 21 72978.5 22 74939.0 23 83823.5 24 99772.5 25 122181.5 26 151060.5 27 181320.5 28 213361.5 29 247628.5 30 279368.5 31 311281.5 32 344598.0 33 377511.5 34 411309.5 35 443992.5 36 477548.5 37 508144.0 38 533491.5 39 555672.0 40 576764.5 41 596895.0 42 611389.5 43 625574.5 44 638193.5 45 647150.5 46 653644.5 47 654714.5 48 649317.0 49 636685.0 50 621630.0 51 603393.5 52 576653.5 53 546239.0 54 514715.5 55 479083.5 56 441647.5 57 401855.5 58 358134.0 59 312151.5 60 265522.5 61 219581.0 62 177172.0 63 139560.5 64 105958.0 65 79889.5 66 60312.0 67 46088.5 68 35344.5 69 25866.5 70 18792.0 71 13732.5 72 9903.5 73 7058.0 74 4877.0 75 3312.5 76 2291.5 77 1584.5 78 1110.5 79 780.0 80 541.0 81 375.5 82 275.0 83 193.0 84 139.5 85 103.0 86 80.5 87 65.0 88 47.0 89 33.0 90 21.5 91 12.0 92 7.5 93 4.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0012721262769993414 3 2.051816575805389E-5 4 6.839388586017964E-6 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0016004169291282037 18-19 0.0014841473231658982 20-21 2.3939053631756207E-5 22-23 0.0026507157650824185 24-25 1.676380435997129E-4 26-27 0.001211642861078985 28-29 5.172051725860571E-4 30-31 1.5094847099490826E-4 32-33 9.635872425867017E-4 34-35 0.01707220647896805 36-37 0.03223037502072487 38-39 0.0075367765709058 40-41 0.004595211378126602 42-43 0.007945606158676623 44-45 0.0056334310448076285 46-47 0.0032213211849396206 48-49 0.001451911045254649 50-51 1.8525852543665718E-4 52-53 1.3011381744449727E-4 54-55 0.004841388139552606 56-57 0.01265434000029798 58-59 0.010287304182221943 60-61 0.008516868682554971 62-63 0.0020327598760303935 64-65 0.0014834938597314052 66-67 0.0014820276204217308 68-69 4.3056442518271425E-6 70-71 1.751728255096478E-5 72-73 7.704522220532374E-4 74-75 8.422860185955017E-4 76-77 1.0137339757457696E-4 78-79 8.586443788235774E-4 80-81 0.002363402963458537 82-83 0.004563443876375671 84-85 0.012005336700667685 86-87 0.007880483700126407 88-89 0.07140789005741523 90-91 0.0 92-93 0.0 94-95 1.244240157805848E-4 96-97 0.007995177167520557 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 473.0 20-21 1458.0 22-23 2868.0 24-25 6190.0 26-27 9037.0 28-29 17402.0 30-31 41380.0 32-33 60704.0 34-35 87896.0 36-37 128280.0 38-39 140023.0 40-41 142885.0 42-43 161611.0 44-45 190881.0 46-47 189470.0 48-49 174999.0 50-51 160473.0 52-53 162464.0 54-55 177677.0 56-57 184312.0 58-59 183253.0 60-61 179036.0 62-63 174506.0 64-65 186205.0 66-67 196611.0 68-69 195111.0 70-71 192819.0 72-73 185003.0 74-75 190063.0 76-77 191260.0 78-79 203686.0 80-81 208251.0 82-83 199652.0 84-85 202071.0 86-87 214455.0 88-89 231594.0 90-91 253105.0 92-93 274733.0 94-95 349017.0 96-97 431177.0 98-99 1194236.0 100-101 6944863.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.50194930469254 #Duplication Level Percentage of deduplicated Percentage of total 1 90.90911821931712 78.63815935541672 2 6.411603997260978 11.092324878656665 3 1.5143073667441087 3.929716172094641 4 0.5436163837067446 1.8809550745840447 5 0.2259875929736615 0.9774183655448583 6 0.13849719877592268 0.7188166600414075 7 0.07125873070677591 0.43148133777799874 8 0.045944409186913254 0.31794247634563366 9 0.027826751135781043 0.21663613944554652 >10 0.10821391680217231 1.5170536654079314 >50 0.0028925652620460274 0.1697323937146565 >100 7.065415383143843E-4 0.09128458004862157 >500 2.6326589489226623E-5 0.01847890092118231 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.367877717203593E-5 0.0 2 0.0 1.367877717203593E-5 0.0 1.367877717203593E-5 0.0 3 0.0 1.367877717203593E-5 0.0 4.103633151610778E-5 0.0 4 0.0 4.103633151610778E-5 0.0 4.787572010212575E-5 0.0 5 0.0 4.787572010212575E-5 0.0 4.787572010212575E-5 0.0 6 8.207266303221557E-5 4.787572010212575E-5 0.0 5.471510868814372E-5 6.839388586017965E-6 7 8.207266303221557E-5 4.787572010212575E-5 0.0 6.839388586017964E-5 6.839388586017965E-6 8 8.207266303221557E-5 7.523327444619761E-5 0.0 7.523327444619761E-5 1.367877717203593E-5 9 8.207266303221557E-5 1.8466349182248503E-4 0.0 1.0943021737628744E-4 1.367877717203593E-5 10-11 8.549235732522456E-5 1.8466349182248503E-4 0.0 1.6072563177142217E-4 1.367877717203593E-5 12-13 9.233174591124252E-5 1.8466349182248503E-4 0.0 1.7782410323646707E-4 1.367877717203593E-5 14-15 1.0601052308327846E-4 2.3595890621761975E-4 0.0 2.0518165758053893E-4 2.3937860051062874E-5 16-17 1.4362716030637726E-4 2.462179890966467E-4 0.0 2.1886043475257484E-4 3.419694293008982E-5 18-19 1.5046654889239522E-4 2.769952377337276E-4 0.0 2.4279829480363773E-4 4.103633151610778E-5 20-21 1.5730593747841318E-4 3.077724863708084E-4 0.0 2.735755434407186E-4 4.103633151610778E-5 22-23 1.6756502035744013E-4 3.5564820647293415E-4 0.0 3.2829065212886227E-4 4.103633151610778E-5 24-25 1.7782410323646707E-4 3.9668453798904195E-4 0.0 3.966845379890419E-4 4.103633151610778E-5 26-27 1.8466349182248503E-4 4.1720270374709584E-4 0.0 5.916071126905539E-4 4.103633151610778E-5 28-29 1.91502880408503E-4 4.240420923331138E-4 0.0 0.001131918810985973 4.103633151610778E-5 30-31 1.91502880408503E-4 4.7191781243523955E-4 0.0 0.0022569982333859283 4.103633151610778E-5 32-33 1.9834226899452095E-4 4.7191781243523955E-4 0.0 0.004777312927333548 4.787572010212575E-5 34-35 2.1202104616655691E-4 5.539904754674551E-4 0.0 0.008617629618382635 5.471510868814372E-5 36-37 2.1886043475257487E-4 6.360631384996707E-4 0.0 0.014540540133874192 5.471510868814372E-5 38-39 2.1886043475257487E-4 6.497419156717067E-4 0.0 0.02278200338002584 5.471510868814372E-5 40-41 2.2569982333859283E-4 7.249751901179043E-4 0.0 0.031221808895172006 6.839388586017964E-5 42-43 2.2569982333859283E-4 7.283948844109133E-4 0.0 0.039610318995923044 6.839388586017964E-5 44-45 2.2911951763160182E-4 7.933690759780838E-4 0.0 0.049253856902208376 6.839388586017964E-5 46-47 2.3253921192461079E-4 8.549235732522455E-4 0.0 0.06056620562348208 6.839388586017964E-5 48-49 2.3253921192461079E-4 8.549235732522455E-4 0.0 0.07091762024842027 6.839388586017964E-5 50-51 2.4963768338965566E-4 9.50675013456497E-4 0.0 0.08089970788971348 6.839388586017964E-5 52-53 2.5989676626868264E-4 9.64353790628533E-4 0.0 0.09018417789523288 7.181358015318862E-5 54-55 2.701558491477096E-4 9.78032567800569E-4 0.0 0.10099725124972728 7.523327444619761E-5 56-57 2.7357554344071855E-4 9.917113449726049E-4 0.0 0.11199498809604416 7.865296873920659E-5 58-59 2.7357554344071855E-4 9.917113449726049E-4 0.0 0.12253790560139086 8.207266303221557E-5 60-61 2.8383462631974553E-4 0.0010122295107306586 0.0 0.1328995793092081 8.207266303221557E-5 62-63 3.077724863708084E-4 0.0010224885936096855 0.0 0.14216011145467639 8.549235732522456E-5 64-65 3.077724863708084E-4 0.0010943021737628742 0.0 0.15162924495201827 8.891205161823354E-5 66-67 3.077724863708084E-4 0.0010943021737628742 0.0 0.1613480161327498 8.891205161823354E-5 68-69 3.2145126354284434E-4 0.0011079809509349102 0.0 0.17202088202123084 8.891205161823354E-5 70-71 3.3854973500788924E-4 0.001125079422399955 0.0 0.18205084538262617 8.891205161823354E-5 72-73 3.7616637223098805E-4 0.001138758199571991 0.0 0.19038806006898207 9.57514402042515E-5 74-75 3.7616637223098805E-4 0.001169535448209072 0.0 0.19815076611411248 9.57514402042515E-5 76-77 3.7616637223098805E-4 0.0012071520854321709 0.0 0.2055031088440818 9.57514402042515E-5 78-79 3.7958606652399704E-4 0.0012310899454832337 0.0 0.21193897350352467 9.57514402042515E-5 80-81 3.83005760817006E-4 0.0012345096397762426 0.0 0.2159776324635683 9.57514402042515E-5 82-83 3.83005760817006E-4 0.0012413490283622606 0.0 0.21889463169550494 9.57514402042515E-5 84-85 3.83005760817006E-4 0.0012584474998273054 0.0 0.2218116309274416 9.57514402042515E-5 86-87 3.8642545511001497E-4 0.0012618671941203143 0.0 0.22213650188527745 9.57514402042515E-5 88-89 3.8984514940302396E-4 0.0012858050541713773 0.0 0.22221173515972367 9.57514402042515E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15445 0.0 43.004795 1 GTATCAA 24980 0.0 29.971718 1 TCAACGC 30150 0.0 23.911257 4 ATCAACG 30465 0.0 23.73005 3 CAACGCA 30730 0.0 23.420683 5 TATCAAC 32160 0.0 22.72985 2 AACGCAG 31850 0.0 22.559204 6 GTACATG 36030 0.0 19.852957 1 TACATGG 36010 0.0 19.271862 2 ACGCAGA 38060 0.0 18.814947 7 CGCAGAG 38590 0.0 18.55654 8 ACATGGG 36530 0.0 18.413584 3 GTGGTAT 7700 0.0 16.144531 1 CATGGGG 26960 0.0 16.056252 4 AGAGTAC 41205 0.0 15.855978 10-11 GAGTACT 26830 0.0 15.542378 12-13 GCAGAGT 46420 0.0 15.235807 9 CAGAGTA 45065 0.0 15.011167 10-11 TGGTATC 7755 0.0 14.733105 2 TATACTG 7575 0.0 13.91459 5 >>END_MODULE