##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139920_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12464832 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.81918713384986 31.0 31.0 34.0 30.0 34.0 2 32.003764832129306 31.0 31.0 34.0 30.0 34.0 3 32.03244905346498 31.0 31.0 34.0 30.0 34.0 4 35.75841391203668 37.0 35.0 37.0 35.0 37.0 5 35.5845997763949 37.0 35.0 37.0 33.0 37.0 6 35.58824065980191 37.0 35.0 37.0 33.0 37.0 7 35.4756862346801 37.0 35.0 37.0 33.0 37.0 8 35.44594255261523 37.0 35.0 37.0 33.0 37.0 9 37.02350781783501 39.0 37.0 39.0 33.0 39.0 10-11 36.865913555834524 39.0 37.0 39.0 33.0 39.0 12-13 36.82400998264558 39.0 37.0 39.0 32.5 39.0 14-15 37.96001313936682 40.0 37.0 41.0 33.0 41.0 16-17 37.96941944343895 40.0 37.0 41.0 33.0 41.0 18-19 37.950222273352736 40.0 37.0 41.0 33.0 41.0 20-21 37.913703665603514 40.0 37.0 41.0 33.0 41.0 22-23 37.832439872047935 40.0 37.0 41.0 32.0 41.0 24-25 37.73131082306482 39.0 37.0 41.0 32.0 41.0 26-27 37.5686325635172 39.0 36.5 41.0 32.0 41.0 28-29 37.42475539722746 39.0 36.0 41.0 32.0 41.0 30-31 37.28373922091539 39.0 36.0 40.0 31.0 41.0 32-33 37.45906810813222 39.0 36.0 40.5 32.0 41.0 34-35 37.44215642629531 39.0 36.0 41.0 32.0 41.0 36-37 37.33306422792148 39.0 36.0 40.5 31.5 41.0 38-39 37.16203506487625 39.0 36.0 40.0 31.0 41.0 40-41 37.15170004500401 39.0 36.0 40.0 31.0 41.0 42-43 37.030481074072426 39.0 35.5 40.0 31.0 41.0 44-45 37.079303091063665 39.0 35.5 40.0 31.0 41.0 46-47 37.22627800433824 39.0 36.0 41.0 31.0 41.0 48-49 37.15835449060717 39.0 36.0 41.0 31.0 41.0 50-51 37.028139312055565 39.0 35.5 40.0 31.0 41.0 52-53 36.89258751511835 39.0 35.0 40.0 31.0 41.0 54-55 36.75741828861973 39.0 35.0 40.0 30.5 41.0 56-57 36.583354535855236 38.0 35.0 40.0 30.0 41.0 58-59 36.43405014040462 38.0 35.0 40.0 30.0 41.0 60-61 36.22891513265601 38.0 34.0 40.0 30.0 41.0 62-63 35.97230231451771 38.0 34.0 40.0 29.0 41.0 64-65 35.741948039721024 37.0 34.0 40.0 29.0 41.0 66-67 35.466218333765696 37.0 34.0 39.5 29.0 41.0 68-69 35.13736339717521 36.0 34.0 39.0 28.5 40.5 70-71 34.792975127538426 36.0 33.0 39.0 28.0 40.0 72-73 34.50518808412379 35.0 33.0 38.5 28.0 40.0 74-75 34.147551797078 35.0 33.0 37.5 28.0 39.5 76-77 33.07651793557992 34.0 31.0 36.0 26.0 39.0 78-79 33.4305819095313 35.0 32.0 36.0 27.0 39.0 80-81 33.312240793764516 35.0 32.0 36.0 27.0 38.5 82-83 32.8773687005967 34.0 31.5 36.0 26.5 37.0 84-85 32.62928486061944 34.0 31.0 35.0 26.0 37.0 86-87 32.53068276908793 34.0 31.0 35.0 26.0 36.5 88-89 32.36145460219423 34.0 31.0 35.0 26.0 36.0 90-91 32.221225123603645 34.0 31.0 35.0 26.0 36.0 92-93 32.12507386206531 34.0 31.0 35.0 26.0 35.5 94-95 32.06373434501705 34.0 31.0 35.0 26.0 35.0 96-97 31.96667829613756 34.0 31.0 35.0 26.0 35.0 98-99 32.16747107328592 34.0 31.0 35.0 26.5 35.0 100-101 31.277553397993824 33.0 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 1.0 18 2.0 19 13.0 20 129.0 21 685.0 22 2966.0 23 9326.0 24 24347.0 25 50933.0 26 91068.0 27 144238.0 28 207626.0 29 278801.0 30 360040.0 31 454560.0 32 568426.0 33 720488.0 34 937540.0 35 1238689.0 36 1724382.0 37 2335098.0 38 2195838.0 39 1083765.0 40 35870.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.453466520848416 22.284295528411455 14.387349945831602 24.87488800490853 2 14.676354422247396 22.31551435501416 40.11509651800622 22.893034704732234 3 17.339836751872006 27.046283587203646 31.58240678632655 24.0314728745978 4 12.188438365259563 18.58223646710276 38.67367133556345 30.55565383207423 5 12.256771691748433 38.64684257276792 36.52175977983498 12.57462595564866 6 29.958703013406033 38.9206930346113 18.101800329117953 13.018803622864713 7 25.670927614587985 32.932694159054854 23.682316777313968 17.714061449043196 8 24.471970420459737 37.19402716378368 21.15231075717667 17.181691658579915 9 25.276257233150034 15.811877769391517 21.279099469611783 37.632765527846665 10-11 24.167409556743323 26.97003056278657 29.212230858787347 19.650329021682765 12-13 24.571943689253093 24.35938567001946 29.262889383507133 21.805781257220314 14-15 21.77539576947367 25.885824213274596 26.58102812777581 25.757751889475927 16-17 21.595235325500514 28.85352978222413 27.46779091270112 22.083443979574234 18-19 21.534975375386217 28.17680382441161 28.955320691595137 21.33290010860703 20-21 22.40532574915862 27.51274560391945 28.59855139513773 21.4833772517842 22-23 21.95214044095707 27.52810320878677 28.567407278960065 21.952349071296087 24-25 21.81368271417748 27.577692932766173 28.865803511960657 21.742820841095682 26-27 21.88107789875874 27.75043612725104 28.609558232764044 21.758927741226188 28-29 21.686793168761522 27.862619557481327 28.680504545890294 21.770082727866853 30-31 21.964740449277308 27.786194079497307 28.628455216952904 21.620610254272478 32-33 21.631674653964406 27.7832471899238 28.75856789143859 21.826510264673203 34-35 21.69248240002337 27.830074619356893 28.696453551965778 21.780989428653964 36-37 21.822496227120887 27.723730658823246 28.81784619319715 21.635926920858715 38-39 21.683600904185983 27.775294107941328 28.816588842872935 21.724516144999754 40-41 21.89955578377198 27.716229271923847 28.73813499205179 21.646079952252382 42-43 21.98422932942225 27.80651943885097 28.501139897438517 21.708111334288265 44-45 21.794379285571644 28.187881022985884 28.274012314457188 21.74372737698528 46-47 22.131597573726737 27.77803906039422 27.827594700946022 22.26276866493302 48-49 22.07271722324034 27.777915667799892 28.00810219317033 22.141264915789442 50-51 21.81467243355302 27.96881998783575 27.978958345021166 22.237549233590066 52-53 21.91580075525686 28.032226072387456 28.013048395654096 22.03892477670159 54-55 21.98153847840947 27.895663434087925 27.857089984610827 22.265708102891775 56-57 22.14413050934759 28.06646247524622 27.61731710841015 22.172089906996042 58-59 21.924707987873504 28.20278734522731 27.9796222275359 21.892882439363284 60-61 22.127088775826387 28.409572029675513 27.546531550689217 21.916807643808887 62-63 22.04216691595569 28.37919351902023 27.52598573692436 22.05265382809972 64-65 21.906187730741568 28.297966646214757 27.623557497024215 22.172288126019456 66-67 22.13213168684979 28.291727664215877 27.391357343644167 22.184783305290168 68-69 22.106872722121498 28.063340350788877 27.624162331851824 22.2056245952378 70-71 22.032810921892406 27.71742986334517 27.799137821498327 22.450621393264093 72-73 22.17799707099191 27.843107459440226 27.75395590815664 22.22493956141122 74-75 21.956531337021858 28.02570085910024 27.727293285062338 22.290474518815564 76-77 22.00093541792683 28.055991632293324 27.587734872014387 22.355338077765463 78-79 22.054820432434354 28.039253125842134 27.58165104575357 22.324275395969938 80-81 21.98294573846268 27.87014922834396 27.737571467832357 22.409333565361006 82-83 22.044606585993595 27.81648363532571 27.821963517106546 22.31694626157415 84-85 22.300285895788054 27.79056845839473 27.64370718445636 22.26543846136085 86-87 21.848888939379346 27.92475603340475 27.782993334494343 22.443361692721556 88-89 22.138950253852173 27.750772110383114 27.784127748818378 22.326149886946332 90-91 22.09812868562808 27.74757646615262 27.940859933749117 22.21343491447018 92-93 22.116214222625743 27.72960794593946 27.839089802799162 22.31508802863564 94-95 21.78452866401267 27.824622261885885 27.990743702572736 22.40010537152872 96-97 21.673395856915633 27.831922459993486 28.130685331794915 22.363996351295967 98-99 21.674291459793977 28.510707638899667 28.24403884331953 21.57096205798683 100-101 24.547888457277452 36.32898911565223 29.38352016474729 9.739602262323034 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2614.0 1 2411.5 2 3572.0 3 5241.0 4 7349.5 5 11814.5 6 15282.5 7 17542.0 8 18442.5 9 17385.0 10 15761.5 11 14458.0 12 16357.0 13 22875.0 14 36981.5 15 55296.5 16 68551.0 17 73814.5 18 74117.5 19 72215.5 20 68954.5 21 66530.5 22 67601.0 23 75778.0 24 90749.5 25 111920.0 26 141757.5 27 172248.0 28 197116.0 29 221048.0 30 241293.0 31 261037.0 32 287305.0 33 315543.0 34 345762.0 35 378605.5 36 414028.5 37 442813.5 38 457219.5 39 467629.5 40 483521.5 41 494985.0 42 501659.0 43 516110.5 44 531151.0 45 543504.5 46 552087.0 47 559696.0 48 574628.0 49 573363.5 50 551791.5 51 534182.0 52 514644.5 53 484088.0 54 446594.0 55 409298.0 56 376628.0 57 341111.5 58 301450.5 59 262656.0 60 222171.0 61 178877.5 62 139335.0 63 107150.0 64 79503.5 65 57867.0 66 42045.0 67 31379.0 68 23807.0 69 17577.5 70 12844.0 71 9168.0 72 6414.5 73 4337.0 74 2912.0 75 1966.0 76 1397.5 77 944.5 78 648.5 79 467.5 80 329.5 81 241.0 82 171.5 83 108.5 84 70.0 85 47.0 86 37.0 87 29.0 88 22.5 89 18.5 90 13.5 91 11.0 92 8.5 93 5.0 94 2.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0013076790766213295 3 2.4067713066650236E-5 4 2.4067713066650236E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0014601079260434476 18-19 0.0013598257882657383 20-21 1.6045953685841808E-5 22-23 0.0025115252328246074 24-25 1.7657248330537267E-4 26-27 0.001260629940796161 28-29 4.8615473501654034E-4 30-31 1.3683570491074368E-4 32-33 0.0010416964859015063 34-35 0.016161128397244432 36-37 0.032885296526853576 38-39 0.007543938907046175 40-41 0.004484473884524631 42-43 0.007099757192517521 44-45 0.005035915251350426 46-47 0.0029014520511663707 48-49 0.001256369761745289 50-51 1.4693249694013076E-4 52-53 9.920255574642528E-5 54-55 0.004326874684708135 56-57 0.011571105720021908 58-59 0.009279235172465183 60-61 0.007480250917192186 62-63 0.0016870176745973353 64-65 0.001249722640607628 66-67 0.0013269539686202529 68-69 0.0 70-71 5.205322921577021E-6 72-73 7.094799332072294E-4 74-75 8.076209264273489E-4 76-77 1.0408129603782774E-4 78-79 8.423011444139259E-4 80-81 0.002713489627301915 82-83 0.004881732626168989 84-85 0.013384217432620587 86-87 0.008694747943244987 88-89 0.06912417483325214 90-91 0.0 92-93 1.3024249655069027E-5 94-95 1.54562590221712E-4 96-97 0.008128750437270713 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 404.0 20-21 1343.0 22-23 2674.0 24-25 4717.0 26-27 7951.0 28-29 15721.0 30-31 36581.0 32-33 52699.0 34-35 75696.0 36-37 112741.0 38-39 126795.0 40-41 127102.0 42-43 143420.0 44-45 167738.0 46-47 167598.0 48-49 155847.0 50-51 142548.0 52-53 141385.0 54-55 158487.0 56-57 167052.0 58-59 166323.0 60-61 166136.0 62-63 160650.0 64-65 168582.0 66-67 179596.0 68-69 167739.0 70-71 164595.0 72-73 157242.0 74-75 158530.0 76-77 160665.0 78-79 172661.0 80-81 177604.0 82-83 167871.0 84-85 168785.0 86-87 179166.0 88-89 195006.0 90-91 213011.0 92-93 226871.0 94-95 290528.0 96-97 354711.0 98-99 997700.0 100-101 5862361.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.59755332480555 #Duplication Level Percentage of deduplicated Percentage of total 1 89.42107396230038 74.75382998924786 2 6.936695088619188 11.597814751375186 3 1.9085222904271477 4.786433818366904 4 0.7773458835444972 2.5993685580571673 5 0.36853756234559154 1.540441926018972 6 0.20442482962668257 1.025364935737853 7 0.11336571660675396 0.6633967577466535 8 0.07093134324073627 0.4743749399174028 9 0.050528832087973034 0.3801678061423024 >10 0.14542391256769635 1.785677424464631 >50 0.0022441537818599093 0.12387737524949445 >100 7.935746851623336E-4 0.12923890609372674 >500 4.8375222673441884E-5 0.023819021028706568 >1k 6.447494357265025E-5 0.1161937905531604 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 8.022571022216745E-6 0.0 5 0.0 0.0 0.0 8.022571022216745E-6 0.0 6 0.0 0.0 0.0 8.022571022216745E-6 0.0 7 0.0 0.0 0.0 2.4067713066650236E-5 0.0 8 0.0 0.0 0.0 2.4067713066650236E-5 0.0 9 0.0 2.4067713066650236E-5 0.0 3.209028408886698E-5 0.0 10-11 0.0 2.4067713066650236E-5 0.0 3.209028408886698E-5 0.0 12-13 0.0 2.4067713066650236E-5 0.0 4.41241406221921E-5 0.0 14-15 8.022571022216745E-6 2.8078998577758606E-5 0.0 6.418056817773396E-5 0.0 16-17 8.022571022216745E-6 3.209028408886698E-5 0.0 7.22031391999507E-5 0.0 18-19 8.022571022216745E-6 4.41241406221921E-5 0.0 1.0028213777770931E-4 0.0 20-21 8.022571022216745E-6 5.615799715551722E-5 0.0 1.2033856533325119E-4 0.0 22-23 1.2033856533325117E-5 5.615799715551722E-5 0.0 1.2033856533325119E-4 0.0 24-25 1.604514204443349E-5 5.615799715551722E-5 0.0 1.9655299004431027E-4 0.0 26-27 1.604514204443349E-5 5.615799715551722E-5 0.0 3.409592684442117E-4 0.0 28-29 1.604514204443349E-5 5.615799715551722E-5 0.0 9.546859516437927E-4 0.0 30-31 1.604514204443349E-5 5.615799715551722E-5 0.0 0.0025030421589316244 0.0 32-33 1.604514204443349E-5 6.418056817773396E-5 0.0 0.005980826697062584 0.0 34-35 2.4067713066650236E-5 9.225956675549258E-5 0.0 0.010990922300436943 0.0 36-37 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.01841982306700965 0.0 38-39 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.028367811134558413 0.0 40-41 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.03921432715659545 0.0 42-43 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.04890158166592217 0.0 44-45 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.06076295292226963 0.0 46-47 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.07330624271550551 0.0 48-49 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.0853240541067862 0.0 50-51 2.4067713066650236E-5 1.0429342328881769E-4 0.0 0.0964433375435786 0.0 52-53 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.10728985356561564 0.0 54-55 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.11836902414729697 0.0 56-57 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.12970491700168923 0.0 58-59 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.14060759102088177 0.0 60-61 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.15049942109127504 0.0 62-63 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.15956893763189106 0.0 64-65 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.16914387614690674 0.0 66-67 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.17853028424290035 0.0 68-69 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.18821753875222708 0.0 70-71 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.19735925843204305 0.0 72-73 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.2053016037440376 0.0 74-75 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.21289496721656576 0.0 76-77 3.209028408886698E-5 1.0429342328881769E-4 0.0 0.220380025980294 0.0 78-79 3.209028408886698E-5 1.0830470879992607E-4 0.0 0.226930455219934 0.0 80-81 4.0112855111083726E-5 1.1231599431103444E-4 0.0 0.23097784230064233 0.0 82-83 4.0112855111083726E-5 1.1231599431103444E-4 0.0 0.2341788481385068 0.0 84-85 4.0112855111083726E-5 1.1231599431103444E-4 0.0 0.23717527841530475 0.0 86-87 4.0112855111083726E-5 1.1231599431103444E-4 0.0 0.2375362941113045 0.0 88-89 4.0112855111083726E-5 1.1231599431103444E-4 0.0 0.23763657624908222 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16815 0.0 39.89718 1 CTTATAC 12615 0.0 29.255577 1 GTATCAA 25875 0.0 28.495369 1 TATACAC 15585 0.0 26.633821 3 ATCAACG 31805 0.0 22.477478 3 CAACGCA 32175 0.0 22.194115 5 TCAACGC 32550 0.0 21.999908 4 TATCAAC 33855 0.0 21.506756 2 AACGCAG 33235 0.0 21.462166 6 TTATACA 20100 0.0 19.974222 2 TACATGG 34730 0.0 19.651 2 ACACATC 19505 0.0 19.228931 6 ACATGGG 35425 0.0 18.858538 3 ACGCAGA 37730 0.0 18.841597 7 GTACATG 37670 0.0 18.744246 1 ACATCTC 20360 0.0 18.73599 8 TACACAT 22235 0.0 18.650229 5 CGCAGAG 38360 0.0 18.521719 8 TATGCCG 11380 0.0 17.432777 42-43 CATGGGG 25625 0.0 17.057693 4 >>END_MODULE